Wall clock time and date at job start Mon Mar 30 2020 04:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48502 * 109.47247 * 269.99777 * 3 2 1 5 5 H 1.48507 * 109.47381 * 29.99645 * 3 2 1 6 6 H 1.48504 * 109.47095 * 149.99891 * 3 2 1 7 7 C 1.37874 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.53510 * 114.16738 * 179.97438 * 9 7 2 11 11 N 1.47473 * 87.93064 * 220.13759 * 10 9 7 12 12 C 1.46900 * 110.99932 * 138.70888 * 11 10 9 13 13 C 1.53003 * 109.47407 * 169.99733 * 12 11 10 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 11 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 11 16 16 C 1.50696 * 109.47222 * 184.99595 * 13 12 11 17 17 C 1.38235 * 119.58766 * 125.00457 * 16 13 12 18 18 C 1.38590 * 119.19097 * 179.97438 * 17 16 13 19 19 C 1.38884 * 118.39676 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.44086 * 179.97438 * 19 18 17 21 21 C 1.38414 * 119.11581 * 359.97438 * 19 18 17 22 22 N 1.31847 * 119.59142 * 304.73135 * 16 13 12 23 23 C 1.47476 * 87.83857 * 27.01345 * 11 10 9 24 24 H 0.96999 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08996 * 113.25252 * 312.94544 * 9 7 2 26 26 H 1.09003 * 113.47478 * 105.37270 * 10 9 7 27 27 H 1.09000 * 113.53420 * 334.91895 * 10 9 7 28 28 H 1.09005 * 109.47208 * 50.00045 * 12 11 10 29 29 H 1.08999 * 109.46786 * 289.99823 * 12 11 10 30 30 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 31 31 H 1.07999 * 120.40267 * 0.02562 * 17 16 13 32 32 H 1.07995 * 120.80014 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.64043 * 180.02562 * 21 19 18 34 34 H 1.09005 * 113.47492 * 87.75450 * 23 11 10 35 35 H 1.08996 * 113.48106 * 218.22364 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.1401 -2.5945 0.0023 11 7 5.1459 -2.0840 0.9524 12 6 5.4199 -3.0680 2.0081 13 6 6.6337 -2.6170 2.8232 14 1 7.4784 -2.4500 2.1549 15 8 6.3219 -1.4030 3.5095 16 6 6.9899 -3.6838 3.8261 17 6 8.2726 -4.1987 3.8484 18 6 8.5913 -5.1792 4.7746 19 6 7.6015 -5.6085 5.6492 20 9 7.8669 -6.5625 6.5682 21 6 6.3396 -5.0458 5.5667 22 7 6.0758 -4.1107 4.6750 23 6 4.1438 -1.0974 1.3967 24 1 -0.4850 0.8400 -0.0004 25 1 3.9422 -0.5119 -0.7319 26 1 4.5601 -2.8828 -0.9614 27 1 3.4924 -3.3619 0.4262 28 1 5.6262 -4.0382 1.5559 29 1 4.5524 -3.1494 2.6630 30 1 5.5782 -1.4777 4.1229 31 1 9.0174 -3.8407 3.1532 32 1 9.5854 -5.5993 4.8152 33 1 5.5637 -5.3730 6.2428 34 1 3.4964 -1.4645 2.1931 35 1 4.5669 -0.1168 1.6147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849326190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:29 Heat of formation + Delta-G solvation = -20.289887 kcal Electronic energy + Delta-G solvation = -19582.826193 eV Core-core repulsion = 16303.667941 eV Total energy + Delta-G solvation = -3279.158253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.31745 -40.65061 -39.15469 -36.70466 -32.85465 -32.68473 -31.98989 -30.16879 -27.15707 -24.97639 -24.79587 -24.10149 -22.42272 -21.10605 -18.64056 -18.04906 -17.65480 -17.44056 -16.92531 -16.15220 -15.66957 -15.31192 -14.90066 -14.65608 -14.26174 -14.07853 -13.89089 -13.64745 -13.23197 -13.09243 -12.67667 -12.51015 -11.80366 -11.61297 -11.24134 -11.00566 -10.56558 -10.31323 -10.24940 -10.02626 -9.92233 -9.59336 -9.47350 -9.17106 -9.09442 -8.53152 -8.12040 -6.08393 -4.08831 0.51998 0.73247 3.22456 3.32892 3.41319 3.47859 3.63008 3.92499 4.16931 4.37440 4.45165 4.46467 4.56812 4.89937 5.04725 5.16148 5.24397 5.29070 5.40618 5.47623 5.54139 5.78427 5.86468 6.09836 6.17549 6.26162 6.35862 6.46256 6.53020 6.86339 7.00980 7.38321 7.49267 7.68686 7.71005 7.87113 8.50835 8.94315 9.54794 11.04113 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003870 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.230466 B = 7233.437059 C = 7353.772783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.511 4.511 8 H 0.073 0.927 9 C -0.002 4.002 10 C 0.008 3.992 11 N -0.479 5.479 12 C -0.004 4.004 13 C 0.172 3.828 14 H 0.118 0.882 15 O -0.543 6.543 16 C 0.090 3.910 17 C -0.128 4.128 18 C -0.109 4.109 19 C 0.043 3.957 20 F -0.131 7.131 21 C 0.079 3.921 22 N -0.446 5.446 23 C -0.002 4.002 24 H 0.264 0.736 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.378 0.622 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.043 -9.767 10.063 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.021 4.021 10 C -0.121 4.121 11 N -0.201 5.201 12 C -0.134 4.134 13 C 0.112 3.888 14 H 0.136 0.864 15 O -0.347 6.347 16 C -0.049 4.049 17 C -0.148 4.148 18 C -0.135 4.135 19 C 0.021 3.979 20 F -0.110 7.110 21 C -0.080 4.080 22 N -0.155 5.155 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.226 0.774 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.231 -8.894 9.496 21.591 hybrid contribution 0.084 -0.470 1.045 1.149 sum 17.315 -9.363 10.541 22.329 Atomic orbital electron populations 1.69914 1.06447 1.27109 1.50286 1.25010 0.94637 0.99277 0.93947 0.86871 0.80901 0.83297 0.78664 1.20359 1.21547 1.17902 1.20923 0.88313 0.94478 1.51209 0.90905 1.20528 0.96182 0.92647 0.92783 1.23811 0.92564 0.99571 0.96152 1.68770 1.31785 1.09470 1.10066 1.23237 0.97613 0.96922 0.95601 1.20790 0.98639 0.80850 0.88546 0.86387 1.86603 1.55420 1.32151 1.60550 1.22395 0.89889 0.96959 0.95624 1.21963 0.97631 0.96255 0.98905 1.21682 0.99894 0.97356 0.94613 1.18846 0.96097 0.91564 0.91352 1.91526 1.94451 1.61184 1.63851 1.22954 0.94393 0.93396 0.97256 1.67546 1.34754 1.10112 1.03063 1.24356 0.91863 0.96067 1.00769 0.92623 0.92637 0.91616 0.92210 0.91221 0.92421 0.77417 0.83390 0.83399 0.81414 0.91966 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.34 27.14 -169.99 -4.61 16.73 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.25 -5.95 5.68 56.52 0.32 -5.63 16 7 C -0.51 -14.15 9.38 -34.44 -0.32 -14.48 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.00 -0.05 2.95 -91.24 -0.27 -0.31 16 10 C 0.01 0.15 7.24 -7.56 -0.05 0.10 16 11 N -0.48 -8.92 6.31 -244.66 -1.54 -10.47 16 12 C 0.00 -0.06 4.34 -3.82 -0.02 -0.08 16 13 C 0.17 2.29 3.53 -27.88 -0.10 2.19 16 14 H 0.12 1.47 7.87 -51.93 -0.41 1.06 16 15 O -0.54 -8.07 12.67 -35.23 -0.45 -8.51 16 16 C 0.09 1.05 5.77 -82.59 -0.48 0.57 16 17 C -0.13 -1.17 9.71 -39.45 -0.38 -1.55 16 18 C -0.11 -0.91 10.16 -39.21 -0.40 -1.31 16 19 C 0.04 0.41 7.34 -39.28 -0.29 0.12 16 20 F -0.13 -1.28 17.28 2.25 0.04 -1.24 16 21 C 0.08 0.81 11.17 -17.47 -0.20 0.62 16 22 N -0.45 -5.45 9.95 -9.42 -0.09 -5.54 16 23 C 0.00 -0.03 6.07 -7.55 -0.05 -0.08 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.06 1.32 7.04 -51.93 -0.37 0.95 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 28 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.06 0.96 7.24 -51.93 -0.38 0.58 16 30 H 0.38 5.05 9.01 45.56 0.41 5.46 16 31 H 0.15 1.00 7.95 -52.49 -0.42 0.58 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.06 1.34 7.38 -51.93 -0.38 0.96 16 35 H 0.07 1.45 7.11 -51.93 -0.37 1.09 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -31.01 300.52 -7.65 -38.65 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.64 Total: 4.56 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.65 Total: -12.22 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.86 Total: -42.50 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.45 Total: -8.51 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.61 Total: 16.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.01 -7.65 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849326190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.362 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds