Wall clock time and date at job start Mon Mar 30 2020 04:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48502 * 109.47247 * 269.99777 * 3 2 1 5 5 H 1.48507 * 109.47381 * 29.99645 * 3 2 1 6 6 H 1.48504 * 109.47095 * 149.99891 * 3 2 1 7 7 C 1.37874 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.53510 * 114.16738 * 179.97438 * 9 7 2 11 11 N 1.47473 * 87.93064 * 220.13759 * 10 9 7 12 12 C 1.46900 * 110.99932 * 138.70888 * 11 10 9 13 13 C 1.53003 * 109.47407 * 169.99733 * 12 11 10 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 11 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 11 16 16 C 1.50696 * 109.47222 * 184.99595 * 13 12 11 17 17 C 1.38235 * 119.58766 * 125.00457 * 16 13 12 18 18 C 1.38590 * 119.19097 * 179.97438 * 17 16 13 19 19 C 1.38884 * 118.39676 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.44086 * 179.97438 * 19 18 17 21 21 C 1.38414 * 119.11581 * 359.97438 * 19 18 17 22 22 N 1.31847 * 119.59142 * 304.73135 * 16 13 12 23 23 C 1.47476 * 87.83857 * 27.01345 * 11 10 9 24 24 H 0.96999 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08996 * 113.25252 * 312.94544 * 9 7 2 26 26 H 1.09003 * 113.47478 * 105.37270 * 10 9 7 27 27 H 1.09000 * 113.53420 * 334.91895 * 10 9 7 28 28 H 1.09005 * 109.47208 * 50.00045 * 12 11 10 29 29 H 1.08999 * 109.46786 * 289.99823 * 12 11 10 30 30 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 31 31 H 1.07999 * 120.40267 * 0.02562 * 17 16 13 32 32 H 1.07995 * 120.80014 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.64043 * 180.02562 * 21 19 18 34 34 H 1.09005 * 113.47492 * 87.75450 * 23 11 10 35 35 H 1.08996 * 113.48106 * 218.22364 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.1401 -2.5945 0.0023 11 7 5.1459 -2.0840 0.9524 12 6 5.4199 -3.0680 2.0081 13 6 6.6337 -2.6170 2.8232 14 1 7.4784 -2.4500 2.1549 15 8 6.3219 -1.4030 3.5095 16 6 6.9899 -3.6838 3.8261 17 6 8.2726 -4.1987 3.8484 18 6 8.5913 -5.1792 4.7746 19 6 7.6015 -5.6085 5.6492 20 9 7.8669 -6.5625 6.5682 21 6 6.3396 -5.0458 5.5667 22 7 6.0758 -4.1107 4.6750 23 6 4.1438 -1.0974 1.3967 24 1 -0.4850 0.8400 -0.0004 25 1 3.9422 -0.5119 -0.7319 26 1 4.5601 -2.8828 -0.9614 27 1 3.4924 -3.3619 0.4262 28 1 5.6262 -4.0382 1.5559 29 1 4.5524 -3.1494 2.6630 30 1 5.5782 -1.4777 4.1229 31 1 9.0174 -3.8407 3.1532 32 1 9.5854 -5.5993 4.8152 33 1 5.5637 -5.3730 6.2428 34 1 3.4964 -1.4645 2.1931 35 1 4.5669 -0.1168 1.6147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849326190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:26 Heat of formation + Delta-G solvation = -45.091440 kcal Electronic energy + Delta-G solvation = -19583.901669 eV Core-core repulsion = 16303.667941 eV Total energy + Delta-G solvation = -3280.233729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -50.05377 -41.52873 -40.64946 -37.82970 -34.72935 -33.57641 -33.08858 -31.54192 -28.68993 -26.63717 -26.10089 -24.97811 -23.62349 -22.32271 -20.41778 -19.15505 -18.78271 -18.43208 -18.25840 -16.96979 -16.81299 -16.75445 -16.25550 -15.95116 -15.40526 -15.26486 -14.90927 -14.80558 -14.64866 -14.19285 -14.13205 -13.59240 -13.42096 -13.30486 -12.85146 -12.36296 -12.20703 -11.87236 -11.77314 -11.39824 -11.18652 -11.06677 -11.00678 -10.63899 -10.54156 -9.99033 -9.71826 -8.28179 -6.33254 -0.24140 0.04312 1.40099 1.42733 1.56111 2.39781 2.44583 2.85583 3.04125 3.06200 3.29196 3.53051 3.64029 3.74470 3.79142 4.03329 4.08114 4.19629 4.33964 4.40639 4.51847 4.63882 4.72584 4.73981 4.81071 4.83981 4.92808 5.02447 5.12658 5.42438 5.49228 5.53420 5.65509 6.25981 6.30835 6.63697 6.72318 6.72543 7.33890 8.87967 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003870 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.230466 B = 7233.437059 C = 7353.772783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.515 4.515 8 H 0.032 0.968 9 C -0.018 4.018 10 C 0.015 3.985 11 N -0.467 5.467 12 C -0.001 4.001 13 C 0.179 3.821 14 H 0.132 0.868 15 O -0.558 6.558 16 C 0.072 3.928 17 C -0.121 4.121 18 C -0.101 4.101 19 C 0.040 3.960 20 F -0.133 7.133 21 C 0.067 3.933 22 N -0.473 5.473 23 C 0.011 3.989 24 H 0.266 0.734 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.381 0.619 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.051 0.949 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.204 -9.848 10.410 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.553 4.553 8 H 0.050 0.950 9 C -0.037 4.037 10 C -0.114 4.114 11 N -0.189 5.189 12 C -0.131 4.131 13 C 0.119 3.881 14 H 0.150 0.850 15 O -0.363 6.363 16 C -0.066 4.066 17 C -0.140 4.140 18 C -0.128 4.128 19 C 0.019 3.981 20 F -0.111 7.111 21 C -0.092 4.092 22 N -0.182 5.182 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.229 0.771 31 H 0.194 0.806 32 H 0.197 0.803 33 H 0.198 0.802 34 H 0.070 0.930 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.415 -8.997 9.847 24.386 hybrid contribution -0.919 -0.592 0.967 1.460 sum 19.496 -9.589 10.814 24.269 Atomic orbital electron populations 1.70059 1.08382 1.28193 1.52299 1.25896 0.95356 1.03247 0.93677 0.85806 0.80105 0.78325 0.79148 1.19502 1.21490 1.15945 1.21157 0.90798 0.92942 1.50400 0.94961 1.20544 0.93383 0.95313 0.94454 1.23687 0.92643 0.97439 0.97588 1.68725 1.30015 1.09589 1.10549 1.23258 0.98382 0.96697 0.94729 1.20748 0.97656 0.80909 0.88834 0.85036 1.86569 1.55663 1.33310 1.60769 1.22202 0.91111 0.97394 0.95883 1.22216 0.96993 0.95663 0.99157 1.22024 1.00865 0.96510 0.93353 1.18958 0.96253 0.91397 0.91496 1.91527 1.94421 1.61222 1.63966 1.23172 0.95390 0.93289 0.97304 1.67467 1.35758 1.11097 1.03927 1.24071 0.92108 0.96874 0.98775 0.92493 0.92323 0.89667 0.92994 0.89909 0.93870 0.77066 0.80613 0.80324 0.80201 0.93038 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.02 0.91 5.47 84.65 0.46 1.37 16 3 Si 0.94 44.02 27.14 68.60 1.86 45.88 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.24 -10.23 5.68 99.48 0.56 -9.67 16 7 C -0.51 -29.19 9.38 25.60 0.24 -28.95 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 9 C -0.02 -0.81 2.95 -11.19 -0.03 -0.85 16 10 C 0.02 0.59 7.24 83.57 0.61 1.20 16 11 N -0.47 -16.56 6.31 -927.98 -5.85 -22.41 16 12 C 0.00 -0.04 4.34 86.30 0.37 0.34 16 13 C 0.18 4.36 3.53 29.85 0.11 4.47 16 14 H 0.13 2.84 7.87 -2.39 -0.02 2.82 16 15 O -0.56 -15.73 12.67 -148.98 -1.89 -17.62 16 16 C 0.07 1.54 5.77 42.55 0.25 1.78 16 17 C -0.12 -1.80 9.71 22.35 0.22 -1.59 16 18 C -0.10 -1.35 10.16 22.51 0.23 -1.12 16 19 C 0.04 0.69 7.34 22.47 0.17 0.85 16 20 F -0.13 -2.30 17.28 44.97 0.78 -1.53 16 21 C 0.07 1.30 11.17 84.73 0.95 2.24 16 22 N -0.47 -11.04 9.95 -183.71 -1.83 -12.87 16 23 C 0.01 0.46 6.07 83.57 0.51 0.96 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.06 2.69 7.04 -2.39 -0.02 2.67 16 26 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.05 2.10 7.87 -2.39 -0.02 2.08 16 28 H 0.08 2.23 8.08 -2.38 -0.02 2.21 16 29 H 0.04 1.41 7.24 -2.39 -0.02 1.40 16 30 H 0.38 9.96 9.01 -74.06 -0.67 9.30 16 31 H 0.18 1.57 7.95 -2.91 -0.02 1.55 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.05 2.23 7.38 -2.38 -0.02 2.21 16 35 H 0.07 2.78 7.11 -2.39 -0.02 2.76 16 Total: -1.00 -67.62 300.52 -2.26 -69.88 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.30 Total: 16.87 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.07 Total: -19.29 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -7.38 Total: -94.19 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.89 Total: -17.62 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.86 Total: 45.88 kcal Total: -67.62 -2.26 -69.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849326190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.789 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds