Wall clock time and date at job start Mon Mar 30 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.52998 * 109.47042 * 269.35042 * 12 11 10 14 14 H 1.09000 * 109.47270 * 60.00021 * 13 12 11 15 15 O 1.42902 * 109.47193 * 300.00203 * 13 12 11 16 16 C 1.50700 * 109.47015 * 180.02562 * 13 12 11 17 17 C 1.38242 * 119.59255 * 124.72912 * 16 13 12 18 18 C 1.38587 * 119.19076 * 179.77305 * 17 16 13 19 19 C 1.38879 * 118.40072 * 0.48688 * 18 17 16 20 20 F 1.35093 * 120.44669 * 179.72717 * 19 18 17 21 21 C 1.38431 * 119.11042 * 359.75426 * 19 18 17 22 22 N 1.31849 * 119.59255 * 304.99916 * 16 13 12 23 23 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 24 24 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 25 25 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 26 26 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 27 27 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 28 28 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 29 29 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 30 30 H 0.96700 * 113.99651 * 299.99719 * 15 13 12 31 31 H 1.08006 * 120.39976 * 359.97438 * 17 16 13 32 32 H 1.07998 * 120.80028 * 180.21663 * 18 17 16 33 33 H 1.08001 * 119.63203 * 179.97438 * 21 19 18 34 34 H 1.09007 * 113.75652 * 270.36911 * 23 11 10 35 35 H 1.08993 * 113.76177 * 139.00817 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8549 -5.7312 -2.9675 14 1 0.1099 -5.0391 -3.3601 15 8 0.2108 -6.7123 -2.1523 16 6 1.5596 -6.4136 -4.1116 17 6 1.4219 -7.7786 -4.2815 18 6 2.0698 -8.3968 -5.3392 19 6 2.8454 -7.6158 -6.1861 20 9 3.4994 -8.1765 -7.2267 21 6 2.9398 -6.2552 -5.9493 22 7 2.3043 -5.7022 -4.9349 23 6 2.1611 -3.7399 -0.0455 24 1 -0.4850 0.8400 -0.0004 25 1 0.4835 -2.5465 0.7729 26 1 -0.3212 -2.8279 -1.5258 27 1 1.3294 -2.4995 -2.2139 28 1 2.3663 -4.2117 -2.7493 29 1 2.6199 -5.6522 -1.7349 30 1 0.8147 -7.3628 -1.7687 31 1 0.8141 -8.3556 -3.6003 32 1 1.9773 -9.4610 -5.4984 33 1 3.5410 -5.6400 -6.6023 34 1 3.1447 -3.5475 -0.4741 35 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849326191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:32 Heat of formation + Delta-G solvation = -46.242017 kcal Electronic energy + Delta-G solvation = -19493.297035 eV Core-core repulsion = 16213.013413 eV Total energy + Delta-G solvation = -3280.283621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04189 -41.51015 -40.34635 -37.93559 -34.72517 -33.69820 -32.68792 -31.26370 -28.40684 -26.74712 -26.11671 -24.97102 -23.67638 -22.39088 -20.43461 -18.97469 -18.68734 -18.36781 -18.09621 -16.92988 -16.74626 -16.64292 -16.48730 -15.99945 -15.46957 -15.41979 -14.87808 -14.73751 -14.32367 -14.05474 -13.78564 -13.48070 -13.36607 -13.16732 -12.83755 -12.49984 -12.40890 -12.02307 -11.83143 -11.31951 -11.11352 -11.01026 -10.91998 -10.55967 -10.47934 -9.92809 -9.52995 -8.13827 -6.25667 -0.22949 0.04877 1.43030 1.44283 1.52193 2.42663 2.46774 2.82913 3.04760 3.10963 3.15685 3.63362 3.66100 3.74329 3.88426 3.93252 4.10403 4.34553 4.35992 4.52892 4.62145 4.66367 4.75958 4.80995 4.84128 4.86610 4.96171 5.03979 5.25597 5.52096 5.54591 5.63818 5.86664 6.30859 6.36002 6.67319 6.82915 6.87276 7.42772 8.95381 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030538 B = 0.003872 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.664823 B = 7228.850329 C = 7805.745983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.022 3.978 11 N -0.474 5.474 12 C 0.006 3.994 13 C 0.182 3.818 14 H 0.095 0.905 15 O -0.543 6.543 16 C 0.075 3.925 17 C -0.126 4.126 18 C -0.097 4.097 19 C 0.038 3.962 20 F -0.132 7.132 21 C 0.070 3.930 22 N -0.478 5.478 23 C 0.012 3.988 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.388 0.612 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.059 0.941 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -17.986 -10.844 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.107 4.107 11 N -0.196 5.196 12 C -0.124 4.124 13 C 0.121 3.879 14 H 0.113 0.887 15 O -0.349 6.349 16 C -0.063 4.063 17 C -0.146 4.146 18 C -0.124 4.124 19 C 0.017 3.983 20 F -0.111 7.111 21 C -0.089 4.089 22 N -0.187 5.187 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.238 0.762 31 H 0.194 0.806 32 H 0.198 0.802 33 H 0.199 0.801 34 H 0.077 0.923 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.287 -17.168 -10.683 20.670 hybrid contribution 1.396 0.506 -0.684 1.634 sum 5.682 -16.662 -11.367 20.955 Atomic orbital electron populations 1.70082 1.07486 1.27628 1.50729 1.25812 0.95604 1.02630 0.94353 0.85644 0.78403 0.78837 0.78979 1.19589 1.20991 1.19304 1.21421 0.93012 0.91699 1.51284 0.92393 1.20276 0.94142 0.92282 0.93125 1.23902 0.98809 0.88321 0.99658 1.68488 1.25968 1.15155 1.09995 1.23161 0.96216 0.99082 0.93934 1.20153 0.93280 0.88542 0.85962 0.88716 1.86645 1.38062 1.43448 1.66759 1.22157 0.95273 0.92573 0.96301 1.22090 0.99491 0.94278 0.98704 1.22010 0.94494 1.02733 0.93114 1.18937 0.97648 0.93282 0.88476 1.91522 1.79007 1.85303 1.55228 1.23192 0.98361 0.91790 0.95592 1.67438 1.07091 1.40524 1.03691 1.23928 0.94841 0.96056 0.96781 0.92850 0.95579 0.93192 0.93530 0.93665 0.90012 0.76227 0.80563 0.80212 0.80101 0.92265 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.02 0.87 5.46 84.66 0.46 1.33 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -29.70 8.77 25.60 0.22 -29.48 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.02 1.07 3.60 -10.89 -0.04 1.03 16 10 C 0.02 1.06 7.53 86.34 0.65 1.71 16 11 N -0.47 -18.82 6.03 -907.02 -5.47 -24.29 16 12 C 0.01 0.18 4.32 86.30 0.37 0.55 16 13 C 0.18 5.08 3.71 29.85 0.11 5.19 16 14 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 15 O -0.54 -13.54 12.09 -148.98 -1.80 -15.34 16 16 C 0.08 1.78 6.17 42.56 0.26 2.04 16 17 C -0.13 -2.10 9.24 22.35 0.21 -1.89 16 18 C -0.10 -1.41 10.16 22.51 0.23 -1.18 16 19 C 0.04 0.69 7.35 22.47 0.17 0.85 16 20 F -0.13 -2.38 17.28 44.97 0.78 -1.61 16 21 C 0.07 1.46 11.17 84.73 0.95 2.40 16 22 N -0.48 -12.50 9.88 -183.70 -1.81 -14.31 16 23 C 0.01 0.52 7.50 86.41 0.65 1.17 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 2.27 7.43 -2.39 -0.02 2.25 16 28 H 0.05 1.62 7.19 -2.39 -0.02 1.60 16 29 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 30 H 0.39 6.33 8.28 -74.06 -0.61 5.71 16 31 H 0.18 2.02 6.72 -2.91 -0.02 2.00 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.06 2.38 7.88 -2.38 -0.02 2.36 16 35 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -65.73 304.78 -1.26 -67.00 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.50 Total: 13.43 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.24 Total: -16.27 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.00 Total: -92.84 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.80 Total: -15.34 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.73 -1.26 -67.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849326191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.754 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds