Wall clock time and date at job start Mon Mar 30 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35460 * 116.99730 * 2 1 4 4 N 1.32334 * 119.19474 * 359.97438 * 3 2 1 5 5 C 1.32289 * 120.75832 * 180.02562 * 4 3 2 6 6 C 1.38618 * 119.17292 * 0.02562 * 5 4 3 7 7 C 1.38571 * 118.52143 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.40899 * 179.97438 * 7 6 5 9 9 O 1.45196 * 109.47357 * 359.97438 * 8 7 6 10 10 C 1.34229 * 116.99841 * 179.97438 * 9 8 7 11 11 O 1.20820 * 120.00569 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99602 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46993 * 299.99501 * 12 10 9 14 14 C 1.52997 * 109.47141 * 60.00329 * 12 10 9 15 15 C 1.50706 * 109.46685 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 N 1.32308 * 119.19502 * 180.27351 * 3 2 1 24 24 H 1.08995 * 109.47718 * 300.00453 * 1 2 3 25 25 H 1.09002 * 109.47239 * 60.00591 * 1 2 3 26 26 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.41103 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.73614 * 179.97438 * 6 5 4 29 29 H 1.09008 * 109.46886 * 239.99472 * 8 7 6 30 30 H 1.09005 * 109.47344 * 120.00175 * 8 7 6 31 31 H 1.09002 * 109.47153 * 299.99670 * 14 12 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.47261 * 59.99842 * 14 12 10 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3075 2.3066 -0.0005 5 6 1.8757 3.5012 -0.0010 6 6 3.2589 3.5916 -0.0016 7 6 3.9986 2.4198 -0.0021 8 6 5.5047 2.4685 -0.0033 9 8 5.9443 3.8524 -0.0043 10 6 7.2687 4.0710 -0.0049 11 8 8.0352 3.1372 -0.0051 12 6 7.7994 5.4816 -0.0054 13 1 7.4461 6.0024 -0.8954 14 6 7.3045 6.2131 1.2439 15 6 9.3061 5.4513 -0.0067 16 1 9.8272 4.5053 -0.0066 17 6 10.0193 6.6313 -0.0078 18 7 11.3342 6.6048 -0.0084 19 14 9.1180 8.2674 -0.0071 20 1 8.8808 8.7013 1.3931 21 1 9.9404 9.2858 -0.7084 22 1 7.8163 8.1158 -0.7056 23 7 3.3660 1.2577 -0.0055 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.2693 4.3950 -0.0010 28 1 3.7492 4.5539 -0.0024 29 1 5.8838 1.9665 -0.8936 30 1 5.8852 1.9667 0.8864 31 1 6.2147 6.2350 1.2444 32 1 7.6888 7.2332 1.2437 33 1 7.6579 5.6922 2.1339 34 1 11.8360 7.4350 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:02 Heat of formation + Delta-G solvation = -59.435575 kcal Electronic energy + Delta-G solvation = -19456.402496 eV Core-core repulsion = 16163.173969 eV Total energy + Delta-G solvation = -3293.228527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46655 -39.88032 -38.57046 -36.18232 -34.24777 -34.05077 -31.96123 -31.34474 -28.23677 -27.64141 -25.25705 -24.20587 -23.78028 -22.36516 -19.97999 -18.69885 -17.98742 -17.10206 -16.71209 -16.31817 -16.24635 -15.95795 -15.42217 -14.90867 -14.63775 -14.33274 -14.28912 -13.50128 -13.31458 -12.73347 -12.42365 -12.34780 -12.20514 -11.67055 -11.60313 -11.25403 -11.22640 -10.98423 -10.74130 -10.45745 -10.24760 -9.74817 -9.44655 -9.39245 -9.23826 -9.18338 -8.69680 -6.17176 -4.20659 0.74652 0.85054 2.16230 3.02080 3.08990 3.18326 3.25957 3.31203 3.51452 3.82178 4.19384 4.27977 4.54976 4.82931 4.91098 4.95772 5.11883 5.12306 5.29340 5.29771 5.35052 5.46534 5.73704 5.91416 6.07111 6.22458 6.31991 6.52075 6.61278 6.91608 6.93685 7.02592 7.40529 7.83148 8.32890 8.57630 8.98146 9.38863 10.95078 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046805 B = 0.003762 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.089410 B = 7440.864318 C = 7937.472616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.291 6.291 3 C 0.500 3.500 4 N -0.572 5.572 5 C 0.185 3.815 6 C -0.242 4.242 7 C 0.218 3.782 8 C 0.112 3.888 9 O -0.366 6.366 10 C 0.477 3.523 11 O -0.495 6.495 12 C 0.028 3.972 13 H 0.066 0.934 14 C -0.147 4.147 15 C -0.521 4.521 16 H 0.095 0.905 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.264 1.264 23 N -0.523 5.523 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.924 -5.275 0.403 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.192 6.192 3 C 0.197 3.803 4 N -0.302 5.302 5 C 0.021 3.979 6 C -0.264 4.264 7 C 0.073 3.927 8 C 0.037 3.963 9 O -0.284 6.284 10 C 0.320 3.680 11 O -0.379 6.379 12 C 0.009 3.991 13 H 0.083 0.917 14 C -0.204 4.204 15 C -0.559 4.559 16 H 0.113 0.887 17 C -0.127 4.127 18 N -0.527 5.527 19 Si 0.713 3.287 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.189 1.189 23 N -0.250 5.250 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.193 0.807 28 H 0.183 0.817 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.923 -6.707 0.396 22.930 hybrid contribution -0.168 1.664 0.044 1.673 sum -22.091 -5.043 0.440 22.664 Atomic orbital electron populations 1.22982 0.75694 1.03492 1.02823 1.86088 1.23295 1.22629 1.87182 1.20480 0.85607 0.84876 0.89308 1.68054 1.41440 0.99336 1.21375 1.23022 0.92601 0.94283 0.88036 1.22684 0.95551 1.01913 1.06241 1.21009 0.95912 0.87312 0.88503 1.21247 0.87056 0.82997 1.04976 1.86486 1.28490 1.27830 1.85613 1.24617 0.77930 0.94380 0.71109 1.90582 1.57494 1.45467 1.44364 1.19160 0.98131 0.84681 0.97137 0.91651 1.22114 0.98870 1.00352 0.99094 1.20912 0.86422 0.96192 1.52338 0.88685 1.24917 0.94786 0.98733 0.94284 1.69866 1.05543 1.27837 1.49423 0.86917 0.79764 0.83857 0.78151 1.20214 1.22068 1.18900 1.67017 1.08069 1.29808 1.20078 0.91910 0.91908 0.87892 0.80726 0.81737 0.88217 0.88215 0.93632 0.92905 0.92272 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 10.36 101.05 1.05 1.40 16 2 O -0.29 -3.60 10.55 -18.07 -0.19 -3.79 16 3 C 0.50 6.85 8.49 -91.25 -0.77 6.07 16 4 N -0.57 -6.81 9.23 -14.73 -0.14 -6.94 16 5 C 0.19 1.85 11.30 -17.21 -0.19 1.66 16 6 C -0.24 -2.79 9.48 -39.32 -0.37 -3.16 16 7 C 0.22 3.02 6.82 -82.26 -0.56 2.46 16 8 C 0.11 1.67 6.03 36.00 0.22 1.88 16 9 O -0.37 -6.14 8.67 -39.26 -0.34 -6.48 16 10 C 0.48 10.02 7.25 36.01 0.26 10.28 16 11 O -0.49 -11.88 15.21 -18.75 -0.29 -12.17 16 12 C 0.03 0.64 2.33 -92.92 -0.22 0.42 16 13 H 0.07 1.41 7.20 -51.93 -0.37 1.03 16 14 C -0.15 -2.90 8.61 37.16 0.32 -2.58 16 15 C -0.52 -14.42 8.96 -34.44 -0.31 -14.73 16 16 H 0.10 2.98 7.00 -52.49 -0.37 2.61 16 17 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.88 20.35 24.37 -169.99 -4.14 16.21 16 20 H -0.28 -6.12 6.87 56.52 0.39 -5.74 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 23 N -0.52 -7.79 10.40 -10.95 -0.11 -7.91 16 24 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.17 1.73 7.09 -52.49 -0.37 1.36 16 29 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.10 1.47 8.13 -51.93 -0.42 1.05 16 31 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -32.69 295.74 -4.50 -37.19 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.84 Total: -0.48 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.68 Total: 5.71 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.52 Total: -40.65 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.82 Total: -22.43 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.14 Total: 16.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.69 -4.50 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.250 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds