Wall clock time and date at job start Mon Mar 30 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35460 * 116.99730 * 2 1 4 4 N 1.32334 * 119.19474 * 359.97438 * 3 2 1 5 5 C 1.32289 * 120.75832 * 180.02562 * 4 3 2 6 6 C 1.38618 * 119.17292 * 0.02562 * 5 4 3 7 7 C 1.38571 * 118.52143 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.40899 * 179.97438 * 7 6 5 9 9 O 1.45196 * 109.47357 * 359.97438 * 8 7 6 10 10 C 1.34229 * 116.99841 * 179.97438 * 9 8 7 11 11 O 1.20820 * 120.00569 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99602 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46993 * 299.99501 * 12 10 9 14 14 C 1.52997 * 109.47141 * 60.00329 * 12 10 9 15 15 C 1.50706 * 109.46685 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 N 1.32308 * 119.19502 * 180.27351 * 3 2 1 24 24 H 1.08995 * 109.47718 * 300.00453 * 1 2 3 25 25 H 1.09002 * 109.47239 * 60.00591 * 1 2 3 26 26 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.41103 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.73614 * 179.97438 * 6 5 4 29 29 H 1.09008 * 109.46886 * 239.99472 * 8 7 6 30 30 H 1.09005 * 109.47344 * 120.00175 * 8 7 6 31 31 H 1.09002 * 109.47153 * 299.99670 * 14 12 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.47261 * 59.99842 * 14 12 10 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3075 2.3066 -0.0005 5 6 1.8757 3.5012 -0.0010 6 6 3.2589 3.5916 -0.0016 7 6 3.9986 2.4198 -0.0021 8 6 5.5047 2.4685 -0.0033 9 8 5.9443 3.8524 -0.0043 10 6 7.2687 4.0710 -0.0049 11 8 8.0352 3.1372 -0.0051 12 6 7.7994 5.4816 -0.0054 13 1 7.4461 6.0024 -0.8954 14 6 7.3045 6.2131 1.2439 15 6 9.3061 5.4513 -0.0067 16 1 9.8272 4.5053 -0.0066 17 6 10.0193 6.6313 -0.0078 18 7 11.3342 6.6048 -0.0084 19 14 9.1180 8.2674 -0.0071 20 1 8.8808 8.7013 1.3931 21 1 9.9404 9.2858 -0.7084 22 1 7.8163 8.1158 -0.7056 23 7 3.3660 1.2577 -0.0055 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.2693 4.3950 -0.0010 28 1 3.7492 4.5539 -0.0024 29 1 5.8838 1.9665 -0.8936 30 1 5.8852 1.9667 0.8864 31 1 6.2147 6.2350 1.2444 32 1 7.6888 7.2332 1.2437 33 1 7.6579 5.6922 2.1339 34 1 11.8360 7.4350 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:02 Heat of formation + Delta-G solvation = -85.198515 kcal Electronic energy + Delta-G solvation = -19457.519661 eV Core-core repulsion = 16163.173969 eV Total energy + Delta-G solvation = -3294.345692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.40868 -41.44880 -39.46280 -37.71069 -35.95337 -35.22251 -33.46013 -32.79830 -29.30780 -28.39272 -27.14575 -25.37951 -25.09461 -23.50345 -21.61538 -19.64632 -19.05049 -18.87966 -17.92576 -17.81553 -17.61907 -17.27184 -16.67583 -16.19438 -15.73511 -15.49832 -15.27148 -14.86946 -14.70737 -14.31195 -14.01247 -13.74991 -13.30036 -12.92396 -12.87700 -12.57155 -12.35917 -12.31274 -12.21831 -12.14896 -11.50644 -11.46805 -11.25666 -11.12070 -10.74955 -10.38900 -10.07470 -8.29059 -6.40122 -0.20816 -0.02363 1.14420 1.33190 1.40370 1.44720 1.55826 1.84999 2.35335 2.58576 2.93707 3.04728 3.22314 3.60525 3.88048 4.01800 4.07963 4.31007 4.33947 4.39566 4.39637 4.40954 4.59252 4.64697 4.71309 4.81412 5.01514 5.09897 5.31889 5.42443 5.48322 5.62866 6.08015 6.22855 6.72868 6.90090 6.92710 7.24937 8.87828 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046805 B = 0.003762 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.089410 B = 7440.864318 C = 7937.472616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.488 3.512 4 N -0.570 5.570 5 C 0.198 3.802 6 C -0.239 4.239 7 C 0.201 3.799 8 C 0.114 3.886 9 O -0.343 6.343 10 C 0.485 3.515 11 O -0.536 6.536 12 C 0.023 3.977 13 H 0.087 0.913 14 C -0.142 4.142 15 C -0.535 4.535 16 H 0.036 0.964 17 C 0.013 3.987 18 N -0.948 5.948 19 Si 0.956 3.044 20 H -0.257 1.257 21 H -0.300 1.300 22 H -0.225 1.225 23 N -0.555 5.555 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.130 0.870 27 H 0.223 0.777 28 H 0.180 0.820 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.820 -3.137 0.546 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.185 3.815 4 N -0.300 5.300 5 C 0.033 3.967 6 C -0.261 4.261 7 C 0.057 3.943 8 C 0.039 3.961 9 O -0.260 6.260 10 C 0.329 3.671 11 O -0.424 6.424 12 C 0.004 3.996 13 H 0.105 0.895 14 C -0.199 4.199 15 C -0.573 4.573 16 H 0.054 0.946 17 C -0.184 4.184 18 N -0.587 5.587 19 Si 0.780 3.220 20 H -0.183 1.183 21 H -0.228 1.228 22 H -0.148 1.148 23 N -0.283 5.283 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.239 0.761 28 H 0.198 0.802 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.873 -4.594 0.542 26.284 hybrid contribution 0.987 0.850 -0.015 1.302 sum -24.886 -3.744 0.527 25.172 Atomic orbital electron populations 1.23280 0.73460 1.05457 1.03165 1.86071 1.25547 1.22571 1.87020 1.20674 0.85430 0.85789 0.89616 1.68189 1.41084 0.99548 1.21198 1.23799 0.92450 0.94983 0.85479 1.22885 0.96284 1.01386 1.05522 1.20793 0.94973 0.88243 0.90307 1.21274 0.88548 0.81454 1.04777 1.86403 1.25740 1.29106 1.84714 1.24345 0.78900 0.93591 0.70249 1.90583 1.58924 1.46561 1.46345 1.19102 0.94725 0.86183 0.99592 0.89532 1.22046 1.01817 0.99332 0.96744 1.21059 0.89730 0.94144 1.52364 0.94604 1.25965 0.95470 1.03604 0.93383 1.70054 1.08024 1.29266 1.51324 0.85764 0.79673 0.77151 0.79437 1.18304 1.22756 1.14774 1.66870 1.09249 1.30752 1.21454 0.91489 0.91506 0.85233 0.76103 0.80219 0.88686 0.88624 0.88924 0.92993 0.93142 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.36 113.37 1.17 1.73 16 2 O -0.31 -7.39 10.55 -87.58 -0.92 -8.32 16 3 C 0.49 12.73 8.49 180.57 1.53 14.26 16 4 N -0.57 -12.01 9.23 -313.45 -2.89 -14.90 16 5 C 0.20 3.16 11.30 84.71 0.96 4.12 16 6 C -0.24 -4.71 9.48 22.44 0.21 -4.50 16 7 C 0.20 5.29 6.82 42.56 0.29 5.58 16 8 C 0.11 3.35 6.03 71.23 0.43 3.78 16 9 O -0.34 -10.85 8.67 -51.41 -0.45 -11.30 16 10 C 0.48 20.15 7.25 71.24 0.52 20.67 16 11 O -0.54 -26.71 15.21 21.98 0.33 -26.37 16 12 C 0.02 1.01 2.33 -12.28 -0.03 0.98 16 13 H 0.09 3.42 7.20 -2.39 -0.02 3.41 16 14 C -0.14 -5.09 8.61 71.98 0.62 -4.47 16 15 C -0.54 -30.41 8.96 25.60 0.23 -30.18 16 16 H 0.04 2.40 7.00 -2.91 -0.02 2.38 16 17 C 0.01 0.75 5.45 84.66 0.46 1.21 16 18 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 19 Si 0.96 40.51 24.37 68.60 1.67 42.19 16 20 H -0.26 -10.16 6.87 99.48 0.68 -9.48 16 21 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.22 -8.09 6.53 99.48 0.65 -7.44 16 23 N -0.55 -16.25 10.40 -301.51 -3.14 -19.39 16 24 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 25 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 26 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.18 2.96 7.09 -2.91 -0.02 2.93 16 29 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 30 H 0.10 2.87 8.13 -2.38 -0.02 2.85 16 31 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16 32 H 0.05 1.88 3.27 -2.39 -0.01 1.87 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -75.62 295.74 2.35 -73.27 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.04 Total: 10.05 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.39 Total: 13.17 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -5.73 Total: -92.69 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.04 Total: -45.99 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.67 Total: 42.19 kcal Total: -75.62 2.35 -73.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.924 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds