Wall clock time and date at job start Mon Mar 30 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35678 * 116.99873 * 2 1 4 4 C 1.39109 * 120.07319 * 179.97438 * 3 2 1 5 5 N 1.31974 * 119.91915 * 180.02562 * 4 3 2 6 6 C 1.32237 * 120.06104 * 359.97438 * 5 4 3 7 7 C 1.38187 * 120.14872 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.95909 * 179.97438 * 7 6 5 9 9 O 1.45204 * 109.47000 * 0.02562 * 8 7 6 10 10 C 1.34226 * 117.00034 * 180.02562 * 9 8 7 11 11 O 1.20829 * 119.99821 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00092 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46959 * 59.99932 * 12 10 9 14 14 C 1.52997 * 109.47078 * 300.00020 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46882 * 119.99668 * 19 17 15 22 22 H 1.48493 * 109.47394 * 239.99732 * 19 17 15 23 23 N 1.32237 * 120.08387 * 0.27731 * 7 6 5 24 24 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47517 * 299.99955 * 1 2 3 26 26 H 1.09006 * 109.47198 * 60.00126 * 1 2 3 27 27 H 1.07999 * 120.04249 * 0.02880 * 4 3 2 28 28 H 1.08004 * 119.92629 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.46853 * 240.00440 * 8 7 6 30 30 H 1.08994 * 109.46814 * 120.00282 * 8 7 6 31 31 H 1.09002 * 109.47153 * 299.99793 * 14 12 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.47261 * 59.99965 * 14 12 10 34 34 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4340 1.2835 0.0005 5 7 4.0300 2.4610 0.0010 6 6 3.3079 3.5689 0.0005 7 6 1.9279 3.4979 -0.0011 8 6 1.1092 4.7632 -0.0011 9 8 1.9956 5.9132 0.0002 10 6 1.4204 7.1260 0.0009 11 8 0.2161 7.2234 0.0000 12 6 2.2767 8.3661 0.0016 13 1 2.9060 8.3736 -0.8884 14 6 3.1600 8.3752 1.2508 15 6 1.3929 9.5867 0.0016 16 1 0.3187 9.4756 0.0016 17 6 1.9559 10.8453 0.0017 18 7 3.2640 10.9807 0.0022 19 14 0.8604 12.3585 0.0025 20 1 -0.5639 11.9384 0.0036 21 1 1.1377 13.1696 1.2152 22 1 1.1367 13.1703 -1.2098 23 7 1.3247 2.3211 0.0034 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0241 0.3790 0.0005 28 1 3.7979 4.5314 0.0014 29 1 0.4795 4.7884 0.8883 30 1 0.4814 4.7897 -0.8917 31 1 2.5307 8.3677 2.1408 32 1 3.7796 9.2720 1.2510 33 1 3.7992 7.4923 1.2503 34 1 3.6601 11.8661 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859737286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:05 Heat of formation + Delta-G solvation = -76.777101 kcal Electronic energy + Delta-G solvation = -19472.688681 eV Core-core repulsion = 16178.708169 eV Total energy + Delta-G solvation = -3293.980512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49618 -39.72534 -38.61512 -36.06229 -34.40248 -33.94957 -31.75874 -30.62246 -28.36942 -27.04768 -25.25451 -24.04908 -23.60282 -22.43559 -19.97799 -18.48963 -17.91140 -16.85128 -16.74806 -16.57748 -16.06484 -15.97193 -15.66596 -14.75801 -14.52815 -14.35698 -13.60927 -13.14696 -13.03981 -12.71686 -12.29438 -12.16527 -11.84071 -11.69316 -11.61984 -11.12400 -11.09236 -10.82098 -10.75073 -10.40277 -10.23946 -10.10288 -9.40809 -9.26118 -9.08936 -8.80940 -8.50002 -6.15133 -4.20924 0.63248 0.95650 2.59927 2.98727 3.17580 3.26708 3.34536 3.42332 3.48493 4.01324 4.20187 4.34747 4.39807 4.79806 4.93891 5.01505 5.10433 5.18494 5.25319 5.34302 5.38144 5.46806 5.96031 6.03385 6.60759 6.74848 6.79633 6.81725 6.99633 7.08352 7.37374 7.58124 7.69524 7.89164 8.08066 8.70872 8.88097 9.45203 10.92212 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044205 B = 0.003698 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.258740 B = 7569.279332 C = 8104.357842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.275 3.725 4 C 0.036 3.964 5 N -0.401 5.401 6 C 0.033 3.967 7 C 0.126 3.874 8 C 0.116 3.884 9 O -0.365 6.365 10 C 0.470 3.530 11 O -0.511 6.511 12 C 0.059 3.941 13 H 0.067 0.933 14 C -0.135 4.135 15 C -0.514 4.514 16 H 0.077 0.923 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.495 5.495 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.176 0.824 28 H 0.188 0.812 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.025 0.975 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -18.347 0.283 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.206 6.206 3 C 0.092 3.908 4 C -0.127 4.127 5 N -0.115 5.115 6 C -0.125 4.125 7 C -0.012 4.012 8 C 0.041 3.959 9 O -0.283 6.283 10 C 0.314 3.686 11 O -0.397 6.397 12 C 0.040 3.960 13 H 0.085 0.915 14 C -0.193 4.193 15 C -0.552 4.552 16 H 0.095 0.905 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.227 5.227 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.193 0.807 28 H 0.205 0.795 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.044 0.956 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.111 -18.466 0.290 18.502 hybrid contribution -1.055 0.771 -0.007 1.307 sum -2.166 -17.696 0.283 17.830 Atomic orbital electron populations 1.22943 0.76879 1.03281 1.02805 1.86271 1.23227 1.23453 1.87655 1.20865 0.91003 0.85165 0.93790 1.22956 0.89520 0.97793 1.02428 1.68578 1.38466 0.97765 1.06691 1.23601 0.91556 0.98611 0.98722 1.21558 0.93265 0.91995 0.94424 1.21156 0.90368 0.80178 1.04237 1.86534 1.41148 1.15164 1.85484 1.25475 0.89474 0.83413 0.70203 1.90526 1.16949 1.86597 1.45668 1.18809 0.93935 0.84918 0.98292 0.91535 1.21754 0.99177 1.02003 0.96324 1.21167 0.93842 0.88740 1.51487 0.90529 1.24931 0.95228 0.99124 0.94648 1.69878 1.09401 1.23476 1.50174 0.86326 0.80849 0.82058 0.77616 1.19497 1.20866 1.20865 1.67547 1.40383 0.98026 1.16733 0.88260 0.92041 0.92055 0.80680 0.79502 0.88902 0.88898 0.94910 0.88467 0.95638 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.40 101.05 1.05 1.34 16 2 O -0.30 -3.18 10.49 -18.73 -0.20 -3.38 16 3 C 0.27 3.37 7.49 -16.94 -0.13 3.24 16 4 C 0.04 0.42 11.18 -17.17 -0.19 0.23 16 5 N -0.40 -5.39 10.49 -12.93 -0.14 -5.53 16 6 C 0.03 0.46 10.55 -17.40 -0.18 0.28 16 7 C 0.13 1.80 6.78 -82.43 -0.56 1.24 16 8 C 0.12 1.78 6.02 36.01 0.22 2.00 16 9 O -0.37 -6.59 8.58 -39.25 -0.34 -6.93 16 10 C 0.47 10.36 7.25 36.01 0.26 10.62 16 11 O -0.51 -12.37 15.21 -18.75 -0.29 -12.66 16 12 C 0.06 1.44 2.74 -92.93 -0.25 1.18 16 13 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 14 C -0.13 -3.04 8.90 37.16 0.33 -2.71 16 15 C -0.51 -13.99 8.37 -34.44 -0.29 -14.28 16 16 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.19 11.32 55.43 0.63 -23.56 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.50 -6.73 9.32 -9.36 -0.09 -6.82 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.19 2.56 6.98 -52.48 -0.37 2.19 16 29 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 30 H 0.09 1.40 8.13 -51.93 -0.42 0.97 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 33 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -29.61 302.46 -4.69 -34.30 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.97 Total: -0.69 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 0.16 Total: 4.71 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.40 Total: -35.91 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.82 Total: -22.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.61 -4.69 -34.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859737286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.482 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds