Wall clock time and date at job start Mon Mar 30 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35678 * 116.99873 * 2 1 4 4 C 1.39109 * 120.07319 * 179.97438 * 3 2 1 5 5 N 1.31974 * 119.91915 * 180.02562 * 4 3 2 6 6 C 1.32237 * 120.06104 * 359.97438 * 5 4 3 7 7 C 1.38187 * 120.14872 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.95909 * 179.97438 * 7 6 5 9 9 O 1.45204 * 109.47000 * 0.02562 * 8 7 6 10 10 C 1.34226 * 117.00034 * 180.02562 * 9 8 7 11 11 O 1.20829 * 119.99821 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00092 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46959 * 59.99932 * 12 10 9 14 14 C 1.52997 * 109.47078 * 300.00020 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46882 * 119.99668 * 19 17 15 22 22 H 1.48493 * 109.47394 * 239.99732 * 19 17 15 23 23 N 1.32237 * 120.08387 * 0.27731 * 7 6 5 24 24 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47517 * 299.99955 * 1 2 3 26 26 H 1.09006 * 109.47198 * 60.00126 * 1 2 3 27 27 H 1.07999 * 120.04249 * 0.02880 * 4 3 2 28 28 H 1.08004 * 119.92629 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.46853 * 240.00440 * 8 7 6 30 30 H 1.08994 * 109.46814 * 120.00282 * 8 7 6 31 31 H 1.09002 * 109.47153 * 299.99793 * 14 12 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 33 33 H 1.09004 * 109.47261 * 59.99965 * 14 12 10 34 34 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4340 1.2835 0.0005 5 7 4.0300 2.4610 0.0010 6 6 3.3079 3.5689 0.0005 7 6 1.9279 3.4979 -0.0011 8 6 1.1092 4.7632 -0.0011 9 8 1.9956 5.9132 0.0002 10 6 1.4204 7.1260 0.0009 11 8 0.2161 7.2234 0.0000 12 6 2.2767 8.3661 0.0016 13 1 2.9060 8.3736 -0.8884 14 6 3.1600 8.3752 1.2508 15 6 1.3929 9.5867 0.0016 16 1 0.3187 9.4756 0.0016 17 6 1.9559 10.8453 0.0017 18 7 3.2640 10.9807 0.0022 19 14 0.8604 12.3585 0.0025 20 1 -0.5639 11.9384 0.0036 21 1 1.1377 13.1696 1.2152 22 1 1.1367 13.1703 -1.2098 23 7 1.3247 2.3211 0.0034 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0241 0.3790 0.0005 28 1 3.7979 4.5314 0.0014 29 1 0.4795 4.7884 0.8883 30 1 0.4814 4.7897 -0.8917 31 1 2.5307 8.3677 2.1408 32 1 3.7796 9.2720 1.2510 33 1 3.7992 7.4923 1.2503 34 1 3.6601 11.8661 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859737286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:05 Heat of formation + Delta-G solvation = -96.836517 kcal Electronic energy + Delta-G solvation = -19473.558523 eV Core-core repulsion = 16178.708169 eV Total energy + Delta-G solvation = -3294.850353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.50524 -41.36607 -39.50890 -37.66712 -35.91738 -35.46319 -32.99419 -32.39795 -29.36702 -27.99471 -27.25342 -25.25726 -24.91303 -23.77384 -21.66568 -19.49259 -18.97796 -18.54714 -17.92932 -17.74478 -17.71416 -17.42201 -17.13317 -16.27262 -15.54796 -15.50444 -15.09427 -14.74830 -14.38313 -13.97748 -13.77367 -13.41327 -13.10732 -12.97158 -12.75033 -12.69884 -12.59100 -12.57511 -12.34356 -12.21830 -12.05642 -11.58005 -11.10552 -11.07215 -10.52080 -10.42253 -9.78076 -8.18898 -6.31698 -0.37271 -0.05580 1.38990 1.40690 1.43263 1.46742 1.59095 1.91616 2.43628 2.47439 2.86683 3.11789 3.19525 3.40520 3.72148 3.99745 4.09656 4.11668 4.35803 4.37030 4.42563 4.51038 4.72352 4.73258 4.92492 5.01665 5.03531 5.32667 5.46597 5.70850 5.88239 5.91294 6.03031 6.12709 6.57825 6.75074 6.98785 7.37386 8.87493 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044205 B = 0.003698 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.258740 B = 7569.279332 C = 8104.357842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.273 3.727 4 C 0.049 3.951 5 N -0.414 5.414 6 C 0.023 3.977 7 C 0.116 3.884 8 C 0.120 3.880 9 O -0.353 6.353 10 C 0.480 3.520 11 O -0.537 6.537 12 C 0.052 3.948 13 H 0.057 0.943 14 C -0.123 4.123 15 C -0.539 4.539 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.275 1.275 23 N -0.504 5.504 24 H 0.132 0.868 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.211 0.789 28 H 0.185 0.815 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -19.809 0.421 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.089 3.911 4 C -0.116 4.116 5 N -0.128 5.128 6 C -0.133 4.133 7 C -0.022 4.022 8 C 0.045 3.955 9 O -0.270 6.270 10 C 0.325 3.675 11 O -0.425 6.425 12 C 0.033 3.967 13 H 0.075 0.925 14 C -0.181 4.181 15 C -0.577 4.577 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.236 5.236 24 H 0.150 0.850 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.227 0.773 28 H 0.202 0.798 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.003 -19.932 0.429 19.962 hybrid contribution -1.080 1.015 -0.064 1.484 sum -2.083 -18.917 0.364 19.035 Atomic orbital electron populations 1.23187 0.75467 1.05364 1.02366 1.86290 1.24562 1.22301 1.87209 1.21100 0.91503 0.85263 0.93201 1.23529 0.89671 0.98253 1.00098 1.68611 1.38687 0.98192 1.07281 1.23550 0.91451 0.98982 0.99334 1.21258 0.93115 0.91691 0.96124 1.21248 0.90186 0.79525 1.04579 1.86459 1.41126 1.14769 1.84665 1.24880 0.88599 0.84190 0.69782 1.90511 1.17812 1.87256 1.46970 1.18712 0.93947 0.85456 0.98582 0.92540 1.21591 0.98838 1.02343 0.95310 1.21301 0.93350 0.90501 1.52503 0.92463 1.25597 0.96472 1.01409 0.94150 1.69956 1.10344 1.24273 1.50057 0.85453 0.78834 0.78991 0.78078 1.20089 1.19953 1.20002 1.67482 1.40895 0.98181 1.17077 0.84982 0.92473 0.92483 0.77275 0.79804 0.88675 0.88668 0.95201 0.90473 0.92758 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.40 113.37 1.18 1.61 16 2 O -0.30 -5.57 10.49 -89.95 -0.94 -6.51 16 3 C 0.27 6.13 7.49 84.80 0.64 6.76 16 4 C 0.05 1.00 11.18 84.88 0.95 1.95 16 5 N -0.41 -10.43 10.49 -194.82 -2.04 -12.48 16 6 C 0.02 0.63 10.55 84.62 0.89 1.53 16 7 C 0.12 3.20 6.78 42.49 0.29 3.49 16 8 C 0.12 3.63 6.02 71.24 0.43 4.06 16 9 O -0.35 -12.66 8.58 -51.38 -0.44 -13.10 16 10 C 0.48 21.31 7.25 71.24 0.52 21.83 16 11 O -0.54 -26.30 15.21 21.95 0.33 -25.97 16 12 C 0.05 2.55 2.74 -12.29 -0.03 2.52 16 13 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 14 C -0.12 -5.53 8.90 71.98 0.64 -4.89 16 15 C -0.54 -29.76 8.37 25.60 0.21 -29.55 16 16 H 0.06 3.33 6.76 -2.91 -0.02 3.31 16 17 C 0.02 1.28 5.30 84.66 0.45 1.73 16 18 N -0.91 -49.32 11.32 21.45 0.24 -49.08 16 19 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 N -0.50 -13.06 9.32 -296.26 -2.76 -15.82 16 24 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 26 H 0.06 0.86 8.11 -2.38 -0.02 0.84 16 27 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.19 4.95 6.98 -2.91 -0.02 4.93 16 29 H 0.10 2.85 8.13 -2.39 -0.02 2.83 16 30 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 3.80 6.07 -2.39 -0.01 3.79 16 33 H 0.05 2.07 8.11 -2.38 -0.02 2.05 16 34 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -62.53 302.46 3.69 -58.84 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.12 Total: 7.96 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.16 Total: 11.04 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.56 Total: -77.38 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.05 Total: -45.58 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -62.53 3.69 -58.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859737286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.000 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds