Wall clock time and date at job start Mon Mar 30 2020 04:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35679 * 117.00529 * 2 1 4 4 C 1.39105 * 120.07322 * 179.97438 * 3 2 1 5 5 N 1.31978 * 119.91522 * 179.97438 * 4 3 2 6 6 C 1.32237 * 120.06368 * 0.02562 * 5 4 3 7 7 C 1.38192 * 120.14629 * 359.97436 * 6 5 4 8 8 C 1.50706 * 119.95671 * 180.02562 * 7 6 5 9 9 O 1.45201 * 109.47064 * 359.97438 * 8 7 6 10 10 C 1.34222 * 117.00137 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00432 * 179.71953 * 10 9 8 13 13 H 1.09000 * 109.47190 * 300.28287 * 12 10 9 14 14 C 1.53010 * 109.46632 * 60.27590 * 12 10 9 15 15 C 1.50703 * 109.47478 * 180.27536 * 12 10 9 16 16 H 1.07993 * 119.99431 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99823 * 180.02562 * 15 12 10 18 18 N 1.31510 * 120.00072 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99811 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46855 * 89.99841 * 19 17 15 21 21 H 1.48496 * 109.47272 * 210.00363 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00391 * 19 17 15 23 23 N 1.32238 * 120.08750 * 0.27891 * 7 6 5 24 24 H 1.08999 * 109.47254 * 300.00693 * 1 2 3 25 25 H 1.09003 * 109.46769 * 60.00231 * 1 2 3 26 26 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.04537 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.92539 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46698 * 239.99950 * 8 7 6 30 30 H 1.08997 * 109.46779 * 120.00069 * 8 7 6 31 31 H 1.09005 * 109.46732 * 180.02562 * 14 12 10 32 32 H 1.08990 * 109.47121 * 300.00016 * 14 12 10 33 33 H 1.09000 * 109.46764 * 60.00436 * 14 12 10 34 34 H 0.97001 * 120.00133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4341 1.2833 0.0005 5 7 4.0301 2.4608 0.0000 6 6 3.3082 3.5687 -0.0005 7 6 1.9281 3.4978 -0.0010 8 6 1.1095 4.7632 -0.0022 9 8 1.9960 5.9131 -0.0020 10 6 1.4210 7.1259 -0.0024 11 8 0.2166 7.2234 -0.0024 12 6 2.2773 8.3659 0.0042 13 1 2.9058 8.3687 0.8947 14 6 3.1617 8.3815 -1.2443 15 6 1.3936 9.5867 0.0092 16 1 0.3194 9.4756 0.0081 17 6 1.9567 10.8453 0.0150 18 7 3.2648 10.9804 0.0159 19 14 0.8613 12.3584 0.0219 20 1 0.5709 12.7528 1.4237 21 1 1.5533 13.4735 -0.6730 22 1 -0.4110 12.0516 -0.6797 23 7 1.3248 2.3211 0.0045 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0241 0.3787 0.0005 28 1 3.7982 4.5311 -0.0013 29 1 0.4804 4.7896 0.8875 30 1 0.4811 4.7885 -0.8924 31 1 3.7814 9.2783 -1.2393 32 1 3.8008 7.4987 -1.2478 33 1 2.5331 8.3787 -2.1348 34 1 3.6609 11.8658 0.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859737287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:08 Heat of formation + Delta-G solvation = -76.750278 kcal Electronic energy + Delta-G solvation = -19471.968448 eV Core-core repulsion = 16177.989100 eV Total energy + Delta-G solvation = -3293.979348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49555 -39.72544 -38.61487 -36.06244 -34.40225 -33.94862 -31.75872 -30.62139 -28.36973 -27.04797 -25.25251 -24.04918 -23.60280 -22.43504 -19.97756 -18.48961 -17.91125 -16.85144 -16.74709 -16.57885 -16.06398 -15.97211 -15.66286 -14.75790 -14.53083 -14.35712 -13.61154 -13.14712 -13.03957 -12.71273 -12.29417 -12.16518 -11.84046 -11.69197 -11.61619 -11.11935 -11.07992 -10.83744 -10.76424 -10.39378 -10.23889 -10.10293 -9.40847 -9.26014 -9.10254 -8.80935 -8.49425 -6.14928 -4.20817 0.63240 0.95617 2.59916 2.98718 3.17564 3.28203 3.34234 3.40869 3.48468 4.01306 4.20163 4.34720 4.39819 4.79821 4.93895 5.01513 5.10420 5.18624 5.25335 5.34283 5.38153 5.46795 5.96059 6.03407 6.60934 6.74889 6.79693 6.81832 6.99612 7.08324 7.37466 7.58103 7.69629 7.89141 8.08208 8.70822 8.87808 9.45219 10.92372 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044184 B = 0.003698 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.554963 B = 7569.944776 C = 8104.896152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.275 3.725 4 C 0.036 3.964 5 N -0.401 5.401 6 C 0.033 3.967 7 C 0.126 3.874 8 C 0.116 3.884 9 O -0.365 6.365 10 C 0.470 3.530 11 O -0.512 6.512 12 C 0.060 3.940 13 H 0.067 0.933 14 C -0.135 4.135 15 C -0.515 4.515 16 H 0.076 0.924 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 N -0.495 5.495 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.176 0.824 28 H 0.188 0.812 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -18.332 -0.341 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.206 6.206 3 C 0.092 3.908 4 C -0.127 4.127 5 N -0.115 5.115 6 C -0.125 4.125 7 C -0.012 4.012 8 C 0.041 3.959 9 O -0.283 6.283 10 C 0.314 3.686 11 O -0.398 6.398 12 C 0.041 3.959 13 H 0.085 0.915 14 C -0.193 4.193 15 C -0.553 4.553 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 N -0.227 5.227 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.193 0.807 28 H 0.205 0.795 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.094 -18.449 -0.340 18.485 hybrid contribution -1.070 0.765 0.017 1.315 sum -2.164 -17.685 -0.322 17.820 Atomic orbital electron populations 1.22942 0.76879 1.03281 1.02804 1.86269 1.23226 1.23459 1.87655 1.20867 0.91003 0.85165 0.93791 1.22955 0.89517 0.97793 1.02430 1.68579 1.38468 0.97765 1.06690 1.23601 0.91555 0.98609 0.98721 1.21559 0.93266 0.91998 0.94422 1.21155 0.90368 0.80179 1.04238 1.86532 1.41148 1.15165 1.85481 1.25475 0.89476 0.83411 0.70198 1.90526 1.16952 1.86600 1.45677 1.18806 0.93920 0.84906 0.98288 0.91541 1.21756 0.99175 1.02011 0.96325 1.21125 0.93805 0.88759 1.51625 0.90590 1.24928 0.95231 0.99113 0.94636 1.69869 1.09400 1.23584 1.50080 0.86370 0.80492 0.81629 0.78272 1.20503 1.21108 1.19664 1.67553 1.40372 0.98025 1.16734 0.92041 0.92059 0.88258 0.80678 0.79503 0.88898 0.88900 0.88458 0.95644 0.94906 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.40 101.05 1.05 1.34 16 2 O -0.30 -3.18 10.49 -18.74 -0.20 -3.38 16 3 C 0.27 3.37 7.49 -16.94 -0.13 3.24 16 4 C 0.04 0.42 11.18 -17.17 -0.19 0.23 16 5 N -0.40 -5.39 10.49 -12.93 -0.14 -5.53 16 6 C 0.03 0.46 10.55 -17.39 -0.18 0.28 16 7 C 0.13 1.80 6.78 -82.43 -0.56 1.24 16 8 C 0.12 1.78 6.02 36.01 0.22 2.00 16 9 O -0.37 -6.59 8.59 -39.24 -0.34 -6.93 16 10 C 0.47 10.36 7.25 36.00 0.26 10.62 16 11 O -0.51 -12.37 15.21 -18.76 -0.29 -12.66 16 12 C 0.06 1.45 2.74 -92.92 -0.25 1.19 16 13 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 14 C -0.13 -3.04 8.90 37.16 0.33 -2.71 16 15 C -0.52 -14.02 8.37 -34.44 -0.29 -14.31 16 16 H 0.08 2.16 6.76 -52.49 -0.35 1.80 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.50 -6.73 9.32 -9.36 -0.09 -6.82 16 24 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 25 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.19 2.56 6.98 -52.49 -0.37 2.19 16 29 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 30 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 31 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -29.58 302.47 -4.69 -34.27 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.97 Total: -0.66 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 0.16 Total: 4.71 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.40 Total: -35.92 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.82 Total: -22.97 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.58 -4.69 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859737287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.478 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds