Wall clock time and date at job start Mon Mar 30 2020 04:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35679 * 117.00529 * 2 1 4 4 C 1.39105 * 120.07322 * 179.97438 * 3 2 1 5 5 N 1.31978 * 119.91522 * 179.97438 * 4 3 2 6 6 C 1.32237 * 120.06368 * 0.02562 * 5 4 3 7 7 C 1.38192 * 120.14629 * 359.97436 * 6 5 4 8 8 C 1.50706 * 119.95671 * 180.02562 * 7 6 5 9 9 O 1.45201 * 109.47064 * 359.97438 * 8 7 6 10 10 C 1.34222 * 117.00137 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00432 * 179.71953 * 10 9 8 13 13 H 1.09000 * 109.47190 * 300.28287 * 12 10 9 14 14 C 1.53010 * 109.46632 * 60.27590 * 12 10 9 15 15 C 1.50703 * 109.47478 * 180.27536 * 12 10 9 16 16 H 1.07993 * 119.99431 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99823 * 180.02562 * 15 12 10 18 18 N 1.31510 * 120.00072 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99811 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46855 * 89.99841 * 19 17 15 21 21 H 1.48496 * 109.47272 * 210.00363 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00391 * 19 17 15 23 23 N 1.32238 * 120.08750 * 0.27891 * 7 6 5 24 24 H 1.08999 * 109.47254 * 300.00693 * 1 2 3 25 25 H 1.09003 * 109.46769 * 60.00231 * 1 2 3 26 26 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.04537 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.92539 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46698 * 239.99950 * 8 7 6 30 30 H 1.08997 * 109.46779 * 120.00069 * 8 7 6 31 31 H 1.09005 * 109.46732 * 180.02562 * 14 12 10 32 32 H 1.08990 * 109.47121 * 300.00016 * 14 12 10 33 33 H 1.09000 * 109.46764 * 60.00436 * 14 12 10 34 34 H 0.97001 * 120.00133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4341 1.2833 0.0005 5 7 4.0301 2.4608 0.0000 6 6 3.3082 3.5687 -0.0005 7 6 1.9281 3.4978 -0.0010 8 6 1.1095 4.7632 -0.0022 9 8 1.9960 5.9131 -0.0020 10 6 1.4210 7.1259 -0.0024 11 8 0.2166 7.2234 -0.0024 12 6 2.2773 8.3659 0.0042 13 1 2.9058 8.3687 0.8947 14 6 3.1617 8.3815 -1.2443 15 6 1.3936 9.5867 0.0092 16 1 0.3194 9.4756 0.0081 17 6 1.9567 10.8453 0.0150 18 7 3.2648 10.9804 0.0159 19 14 0.8613 12.3584 0.0219 20 1 0.5709 12.7528 1.4237 21 1 1.5533 13.4735 -0.6730 22 1 -0.4110 12.0516 -0.6797 23 7 1.3248 2.3211 0.0045 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0241 0.3787 0.0005 28 1 3.7982 4.5311 -0.0013 29 1 0.4804 4.7896 0.8875 30 1 0.4811 4.7885 -0.8924 31 1 3.7814 9.2783 -1.2393 32 1 3.8008 7.4987 -1.2478 33 1 2.5331 8.3787 -2.1348 34 1 3.6609 11.8658 0.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859737287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:07 Heat of formation + Delta-G solvation = -96.784579 kcal Electronic energy + Delta-G solvation = -19472.837201 eV Core-core repulsion = 16177.989100 eV Total energy + Delta-G solvation = -3294.848101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50475 -41.36601 -39.50877 -37.66734 -35.91649 -35.46311 -32.99378 -32.39751 -29.36751 -27.99497 -27.25160 -25.25738 -24.91324 -23.77341 -21.66550 -19.49281 -18.97792 -18.54591 -17.92771 -17.74406 -17.71758 -17.41813 -17.13312 -16.27568 -15.54832 -15.50459 -15.09616 -14.74444 -14.38084 -13.97812 -13.77274 -13.40809 -13.10750 -12.96575 -12.76413 -12.69895 -12.59590 -12.57715 -12.33979 -12.21383 -12.04777 -11.58025 -11.10771 -11.08133 -10.51800 -10.42301 -9.78082 -8.18722 -6.31628 -0.37293 -0.05626 1.39204 1.40526 1.44449 1.46758 1.57814 1.91577 2.43637 2.47403 2.86682 3.11971 3.19502 3.40479 3.72151 3.99716 4.09653 4.11637 4.35814 4.37032 4.42574 4.51040 4.72371 4.73325 4.92490 5.01696 5.03589 5.32597 5.46637 5.70767 5.88242 5.91293 6.02984 6.12790 6.57792 6.74821 6.98743 7.37360 8.87471 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044184 B = 0.003698 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.554963 B = 7569.944776 C = 8104.896152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.273 3.727 4 C 0.049 3.951 5 N -0.414 5.414 6 C 0.023 3.977 7 C 0.116 3.884 8 C 0.120 3.880 9 O -0.353 6.353 10 C 0.480 3.520 11 O -0.537 6.537 12 C 0.052 3.948 13 H 0.057 0.943 14 C -0.123 4.123 15 C -0.540 4.540 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.275 1.275 23 N -0.504 5.504 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.132 0.868 27 H 0.211 0.789 28 H 0.185 0.815 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -19.805 -0.464 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.089 3.911 4 C -0.115 4.115 5 N -0.128 5.128 6 C -0.133 4.133 7 C -0.022 4.022 8 C 0.045 3.955 9 O -0.270 6.270 10 C 0.326 3.674 11 O -0.425 6.425 12 C 0.033 3.967 13 H 0.075 0.925 14 C -0.181 4.181 15 C -0.578 4.578 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.236 5.236 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.150 0.850 27 H 0.227 0.773 28 H 0.202 0.798 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.010 -19.926 -0.461 19.957 hybrid contribution -1.088 1.011 0.069 1.486 sum -2.098 -18.915 -0.392 19.035 Atomic orbital electron populations 1.23186 0.75468 1.05365 1.02365 1.86289 1.24561 1.22307 1.87209 1.21102 0.91504 0.85263 0.93203 1.23529 0.89668 0.98253 1.00100 1.68612 1.38689 0.98192 1.07280 1.23550 0.91451 0.98980 0.99334 1.21259 0.93116 0.91694 0.96122 1.21247 0.90185 0.79524 1.04582 1.86457 1.41128 1.14770 1.84663 1.24879 0.88602 0.84187 0.69782 1.90511 1.17807 1.87257 1.46973 1.18709 0.93938 0.85452 0.98575 0.92548 1.21592 0.98836 1.02353 0.95310 1.21273 0.93355 0.90513 1.52618 0.92451 1.25596 0.96474 1.01405 0.94137 1.69950 1.10352 1.24340 1.49973 0.85503 0.78757 0.78685 0.78419 1.19931 1.20035 1.20032 1.67488 1.40884 0.98179 1.17076 0.92478 0.92482 0.84979 0.77273 0.79806 0.88680 0.88658 0.90462 0.92763 0.95205 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.40 113.37 1.18 1.61 16 2 O -0.30 -5.57 10.49 -89.97 -0.94 -6.51 16 3 C 0.27 6.13 7.49 84.80 0.64 6.76 16 4 C 0.05 1.00 11.18 84.88 0.95 1.95 16 5 N -0.41 -10.44 10.49 -194.82 -2.04 -12.48 16 6 C 0.02 0.63 10.55 84.62 0.89 1.53 16 7 C 0.12 3.20 6.78 42.49 0.29 3.49 16 8 C 0.12 3.63 6.02 71.24 0.43 4.06 16 9 O -0.35 -12.66 8.59 -51.34 -0.44 -13.10 16 10 C 0.48 21.31 7.25 71.23 0.52 21.83 16 11 O -0.54 -26.28 15.21 21.94 0.33 -25.95 16 12 C 0.05 2.56 2.74 -12.28 -0.03 2.53 16 13 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 14 C -0.12 -5.54 8.90 71.99 0.64 -4.89 16 15 C -0.54 -29.82 8.37 25.60 0.21 -29.60 16 16 H 0.06 3.33 6.76 -2.91 -0.02 3.31 16 17 C 0.02 1.29 5.30 84.66 0.45 1.74 16 18 N -0.91 -49.35 11.32 21.45 0.24 -49.11 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 N -0.50 -13.06 9.32 -296.25 -2.76 -15.82 16 24 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 25 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 26 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.19 4.95 6.98 -2.91 -0.02 4.93 16 29 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 30 H 0.10 2.85 8.13 -2.39 -0.02 2.83 16 31 H 0.08 3.81 6.07 -2.38 -0.01 3.79 16 32 H 0.05 2.07 8.12 -2.39 -0.02 2.05 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -62.46 302.47 3.69 -58.77 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.12 Total: 8.08 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.16 Total: 11.00 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -4.56 Total: -77.41 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.05 Total: -45.56 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -62.46 3.69 -58.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859737287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.012 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds