Wall clock time and date at job start Mon Mar 30 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47170 * 2 1 4 4 C 1.46496 * 119.99751 * 280.86401 * 3 2 1 5 5 C 1.50696 * 109.47151 * 269.99883 * 4 3 2 6 6 H 1.07998 * 120.00067 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00055 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46966 * 90.00234 * 9 7 5 11 11 H 1.48505 * 109.47116 * 210.00223 * 9 7 5 12 12 H 1.48502 * 109.46873 * 330.00342 * 9 7 5 13 13 C 1.34779 * 119.99876 * 100.86625 * 3 2 1 14 14 O 1.21574 * 119.99731 * 187.06455 * 13 3 2 15 15 C 1.47673 * 120.00312 * 7.06396 * 13 3 2 16 16 C 1.40016 * 120.57544 * 328.19062 * 15 13 3 17 17 C 1.38348 * 118.31346 * 180.26353 * 16 15 13 18 18 C 1.50704 * 120.30649 * 179.71903 * 17 16 15 19 19 C 1.38336 * 119.38170 * 359.44043 * 17 16 15 20 20 N 1.31918 * 121.13122 * 0.27812 * 19 17 16 21 21 C 1.31943 * 121.84413 * 359.97438 * 20 19 17 22 22 F 1.35096 * 119.76058 * 179.97438 * 21 20 19 23 23 H 1.09007 * 109.47049 * 299.99933 * 1 2 3 24 24 H 1.09000 * 109.47255 * 60.00192 * 1 2 3 25 25 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47532 * 240.00249 * 2 1 3 27 27 H 1.09000 * 109.47255 * 119.99808 * 2 1 3 28 28 H 1.09000 * 109.47181 * 30.00351 * 4 3 2 29 29 H 1.09004 * 109.46888 * 150.00289 * 4 3 2 30 30 H 0.96997 * 119.99506 * 179.97438 * 8 7 5 31 31 H 1.07993 * 120.84677 * 359.97438 * 16 15 13 32 32 H 1.08993 * 109.46996 * 269.71590 * 18 17 16 33 33 H 1.09002 * 109.47465 * 29.72257 * 18 17 16 34 34 H 1.09004 * 109.46702 * 149.72095 * 18 17 16 35 35 H 1.07997 * 119.43640 * 180.30341 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0370 2.1515 -1.2460 5 6 3.3589 1.9505 -1.9410 6 1 4.1099 1.3125 -1.4990 7 6 3.6093 2.5804 -3.1417 8 7 2.6946 3.3570 -3.6802 9 14 5.2482 2.3319 -4.0029 10 1 5.1546 1.1662 -4.9182 11 1 5.5864 3.5487 -4.7841 12 1 6.3063 2.0831 -2.9911 13 6 2.4504 1.9433 1.1463 14 8 2.7341 3.1251 1.1746 15 6 2.5791 1.1235 2.3679 16 6 1.7141 0.0468 2.5975 17 6 1.8731 -0.6863 3.7600 18 6 0.9628 -1.8505 4.0554 19 6 2.8790 -0.3443 4.6458 20 7 3.6850 0.6716 4.4034 21 6 3.5720 1.4049 3.3124 22 9 4.4201 2.4362 3.1068 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.2298 1.8121 -1.8951 29 1 1.9019 3.2095 -1.0211 30 1 2.8709 3.8003 -4.5247 31 1 0.9394 -0.2023 1.8875 32 1 0.0969 -1.5010 4.6175 33 1 0.6312 -2.2992 3.1190 34 1 1.5021 -2.5932 4.6433 35 1 3.0070 -0.9190 5.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864975520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:56 Heat of formation + Delta-G solvation = -19.664148 kcal Electronic energy + Delta-G solvation = -20402.403943 eV Core-core repulsion = 17123.272825 eV Total energy + Delta-G solvation = -3279.131119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.75077 -40.65554 -38.69757 -35.72426 -33.78663 -33.00944 -31.92216 -30.34886 -27.36497 -27.16795 -24.70403 -23.58956 -22.90533 -21.88013 -19.04176 -17.97829 -17.47422 -16.80465 -16.42107 -15.93595 -15.37358 -14.99952 -14.50749 -14.36091 -14.10604 -13.94134 -13.57338 -13.24679 -12.82030 -12.55104 -12.37858 -12.33456 -12.26201 -12.09813 -11.69627 -11.25212 -10.99004 -10.91551 -10.62247 -10.18172 -9.98416 -9.78796 -9.64823 -9.04565 -8.83414 -8.46606 -7.78123 -6.08066 -4.13213 0.60209 0.92587 3.10267 3.28696 3.35877 3.39056 3.44522 3.69021 3.84409 4.36844 4.41832 4.52660 4.61326 4.66233 5.02451 5.15166 5.26806 5.31945 5.39187 5.42813 5.45190 5.57853 5.67200 5.81795 5.82953 5.91951 6.12683 6.38649 6.46860 6.96462 7.37068 7.43488 7.49825 7.87845 8.17538 8.24395 8.78698 8.95114 9.52070 11.00035 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.006009 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.006328 B = 4658.339453 C = 5284.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.550 3.450 14 O -0.521 6.521 15 C -0.189 4.189 16 C -0.047 4.047 17 C -0.164 4.164 18 C -0.106 4.106 19 C 0.146 3.854 20 N -0.516 5.516 21 C 0.350 3.650 22 F -0.091 7.091 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.175 0.825 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 -12.953 13.517 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.049 4.049 3 N -0.315 5.315 4 C 0.127 3.873 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.335 3.665 14 O -0.398 6.398 15 C -0.196 4.196 16 C -0.072 4.072 17 C -0.166 4.166 18 C -0.163 4.163 19 C -0.012 4.012 20 N -0.230 5.230 21 C 0.196 3.804 22 F -0.069 7.069 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.119 -11.909 13.891 19.000 hybrid contribution 0.531 -0.118 -1.210 1.326 sum -4.588 -12.027 12.681 18.070 Atomic orbital electron populations 1.22278 0.96244 1.01924 1.03047 1.22207 0.93973 0.84830 1.03840 1.48126 1.60710 1.13221 1.09451 1.19359 0.97343 0.92438 0.78141 1.21421 1.00746 1.29322 1.05465 0.92426 1.24923 0.97152 0.94777 0.97092 1.69930 1.33939 1.30311 1.19001 0.86487 0.83832 0.77634 0.79451 1.20591 1.20986 1.19837 1.17703 0.79301 0.86970 0.82498 1.90810 1.49524 1.15040 1.84433 1.21137 0.99432 1.00370 0.98651 1.22562 0.97868 0.90880 0.95918 1.20911 0.99709 1.00406 0.95568 1.20691 0.98152 0.94568 1.02886 1.22557 0.89034 0.91290 0.98270 1.67088 1.28701 1.07589 1.19619 1.18106 0.87162 0.85386 0.89737 1.91713 1.68052 1.53490 1.93662 0.92599 0.90957 0.91582 0.89871 0.89584 0.94559 0.93412 0.92633 0.80870 0.90649 0.90915 0.90916 0.81550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.16 37.15 0.34 -1.83 16 2 C 0.08 1.16 5.60 -4.04 -0.02 1.13 16 3 N -0.58 -12.38 2.47 -176.24 -0.44 -12.82 16 4 C 0.25 6.37 5.20 -5.20 -0.03 6.34 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.55 12.15 7.36 -12.41 -0.09 12.06 16 14 O -0.52 -13.81 15.54 5.30 0.08 -13.73 16 15 C -0.19 -3.32 5.57 -104.76 -0.58 -3.91 16 16 C -0.05 -0.60 7.26 -38.88 -0.28 -0.88 16 17 C -0.16 -1.64 5.89 -104.54 -0.62 -2.26 16 18 C -0.11 -0.62 10.03 36.01 0.36 -0.26 16 19 C 0.15 1.61 10.84 -17.48 -0.19 1.42 16 20 N -0.52 -7.95 10.36 -13.22 -0.14 -8.09 16 21 C 0.35 6.36 8.37 -16.88 -0.14 6.22 16 22 F -0.09 -1.88 16.07 2.25 0.04 -1.84 16 23 H 0.06 0.65 7.16 -51.92 -0.37 0.28 16 24 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.09 1.13 3.88 -52.10 -0.20 0.93 16 28 H 0.04 0.93 7.64 -51.93 -0.40 0.54 16 29 H 0.05 1.40 7.34 -51.93 -0.38 1.02 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.17 1.91 3.07 -52.49 -0.16 1.74 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -34.46 300.31 -5.87 -40.34 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -3.99 Total: -3.98 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.67 Total: 4.35 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.16 Total: -46.57 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.46 -5.87 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864975520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.672 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds