Wall clock time and date at job start Mon Mar 30 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47170 * 2 1 4 4 C 1.46496 * 119.99751 * 280.86401 * 3 2 1 5 5 C 1.50696 * 109.47151 * 269.99883 * 4 3 2 6 6 H 1.07998 * 120.00067 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00055 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46966 * 90.00234 * 9 7 5 11 11 H 1.48505 * 109.47116 * 210.00223 * 9 7 5 12 12 H 1.48502 * 109.46873 * 330.00342 * 9 7 5 13 13 C 1.34779 * 119.99876 * 100.86625 * 3 2 1 14 14 O 1.21574 * 119.99731 * 187.06455 * 13 3 2 15 15 C 1.47673 * 120.00312 * 7.06396 * 13 3 2 16 16 C 1.40016 * 120.57544 * 328.19062 * 15 13 3 17 17 C 1.38348 * 118.31346 * 180.26353 * 16 15 13 18 18 C 1.50704 * 120.30649 * 179.71903 * 17 16 15 19 19 C 1.38336 * 119.38170 * 359.44043 * 17 16 15 20 20 N 1.31918 * 121.13122 * 0.27812 * 19 17 16 21 21 C 1.31943 * 121.84413 * 359.97438 * 20 19 17 22 22 F 1.35096 * 119.76058 * 179.97438 * 21 20 19 23 23 H 1.09007 * 109.47049 * 299.99933 * 1 2 3 24 24 H 1.09000 * 109.47255 * 60.00192 * 1 2 3 25 25 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47532 * 240.00249 * 2 1 3 27 27 H 1.09000 * 109.47255 * 119.99808 * 2 1 3 28 28 H 1.09000 * 109.47181 * 30.00351 * 4 3 2 29 29 H 1.09004 * 109.46888 * 150.00289 * 4 3 2 30 30 H 0.96997 * 119.99506 * 179.97438 * 8 7 5 31 31 H 1.07993 * 120.84677 * 359.97438 * 16 15 13 32 32 H 1.08993 * 109.46996 * 269.71590 * 18 17 16 33 33 H 1.09002 * 109.47465 * 29.72257 * 18 17 16 34 34 H 1.09004 * 109.46702 * 149.72095 * 18 17 16 35 35 H 1.07997 * 119.43640 * 180.30341 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0370 2.1515 -1.2460 5 6 3.3589 1.9505 -1.9410 6 1 4.1099 1.3125 -1.4990 7 6 3.6093 2.5804 -3.1417 8 7 2.6946 3.3570 -3.6802 9 14 5.2482 2.3319 -4.0029 10 1 5.1546 1.1662 -4.9182 11 1 5.5864 3.5487 -4.7841 12 1 6.3063 2.0831 -2.9911 13 6 2.4504 1.9433 1.1463 14 8 2.7341 3.1251 1.1746 15 6 2.5791 1.1235 2.3679 16 6 1.7141 0.0468 2.5975 17 6 1.8731 -0.6863 3.7600 18 6 0.9628 -1.8505 4.0554 19 6 2.8790 -0.3443 4.6458 20 7 3.6850 0.6716 4.4034 21 6 3.5720 1.4049 3.3124 22 9 4.4201 2.4362 3.1068 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.2298 1.8121 -1.8951 29 1 1.9019 3.2095 -1.0211 30 1 2.8709 3.8003 -4.5247 31 1 0.9394 -0.2023 1.8875 32 1 0.0969 -1.5010 4.6175 33 1 0.6312 -2.2992 3.1190 34 1 1.5021 -2.5932 4.6433 35 1 3.0070 -0.9190 5.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864975520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:56 Heat of formation + Delta-G solvation = -43.923823 kcal Electronic energy + Delta-G solvation = -20403.455922 eV Core-core repulsion = 17123.272825 eV Total energy + Delta-G solvation = -3280.183097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.16592 -41.90343 -40.19837 -37.35625 -35.27652 -34.51077 -33.28468 -31.76817 -29.28558 -27.96153 -26.07000 -25.21121 -24.17529 -23.24750 -20.54709 -19.20864 -18.70924 -18.66636 -18.20418 -17.33680 -17.05691 -16.35254 -16.08630 -16.07807 -15.22392 -14.92877 -14.79175 -14.69460 -14.34725 -13.88862 -13.58437 -13.39161 -13.29382 -13.26221 -13.12832 -12.85475 -12.69596 -12.52391 -12.27887 -12.09028 -11.78332 -11.29250 -10.94607 -10.67608 -10.52787 -9.91106 -9.55634 -8.27523 -6.42526 -0.55517 -0.13135 1.32984 1.36798 1.46562 1.65073 2.06264 2.34790 2.44794 2.47905 3.02206 3.20534 3.46253 3.67094 3.73522 3.98387 4.12054 4.27114 4.46903 4.50451 4.64688 4.66905 4.84375 4.90232 4.98968 4.99869 5.14399 5.18913 5.25753 5.37253 5.48505 5.55378 5.74984 5.99578 6.42115 6.54849 6.65757 7.13054 7.30711 8.79873 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.006009 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.006328 B = 4658.339453 C = 5284.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.066 3.934 3 N -0.587 5.587 4 C 0.261 3.739 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.541 3.459 14 O -0.586 6.586 15 C -0.209 4.209 16 C -0.045 4.045 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.152 3.848 20 N -0.529 5.529 21 C 0.313 3.687 22 F -0.123 7.123 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.035 0.965 29 H -0.001 1.001 30 H 0.269 0.731 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -17.071 15.051 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.055 4.055 3 N -0.317 5.317 4 C 0.141 3.859 5 C -0.589 4.589 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.563 5.563 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.329 3.671 14 O -0.467 6.467 15 C -0.216 4.216 16 C -0.070 4.070 17 C -0.134 4.134 18 C -0.163 4.163 19 C -0.005 4.005 20 N -0.243 5.243 21 C 0.160 3.840 22 F -0.102 7.102 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.078 0.922 31 H 0.211 0.789 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.098 -16.087 15.427 23.108 hybrid contribution 0.731 1.030 -1.549 1.999 sum -5.367 -15.058 13.878 21.169 Atomic orbital electron populations 1.22250 0.93340 1.04808 1.02365 1.22648 0.96310 0.81519 1.05042 1.48128 1.60637 1.15174 1.07757 1.18811 0.96486 0.90623 0.80025 1.21673 1.01504 1.29600 1.06076 0.93238 1.25823 1.00925 0.94236 0.97786 1.70040 1.35898 1.30897 1.19502 0.85428 0.78805 0.78380 0.78283 1.18303 1.20386 1.20286 1.18449 0.77925 0.86772 0.83976 1.90751 1.52214 1.18001 1.85774 1.20773 1.01772 1.02180 0.96871 1.22788 0.97063 0.89474 0.97641 1.21447 0.98790 1.00057 0.93126 1.20909 0.97909 0.92962 1.04560 1.23566 0.87636 0.89597 0.99679 1.67169 1.30161 1.08612 1.18358 1.18348 0.88032 0.86212 0.91405 1.91617 1.69210 1.55247 1.94088 0.91712 0.93317 0.86754 0.90494 0.86592 0.94697 0.98245 0.92220 0.78933 0.88734 0.89292 0.88281 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 9.16 71.98 0.66 -3.12 16 2 C 0.07 1.97 5.60 86.38 0.48 2.45 16 3 N -0.59 -26.01 2.47 -829.77 -2.05 -28.07 16 4 C 0.26 14.42 5.20 85.63 0.45 14.87 16 5 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.70 5.46 84.65 0.46 1.16 16 8 N -0.92 -56.36 13.29 21.45 0.28 -56.07 16 9 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.54 25.36 7.36 86.74 0.64 26.00 16 14 O -0.59 -33.90 15.54 -3.95 -0.06 -33.96 16 15 C -0.21 -7.47 5.57 -19.95 -0.11 -7.58 16 16 C -0.04 -1.02 7.26 22.73 0.16 -0.86 16 17 C -0.13 -2.01 5.89 -19.81 -0.12 -2.12 16 18 C -0.11 -0.51 10.03 71.24 0.71 0.20 16 19 C 0.15 2.72 10.84 84.70 0.92 3.64 16 20 N -0.53 -15.64 10.36 -195.74 -2.03 -17.67 16 21 C 0.31 11.74 8.37 85.08 0.71 12.45 16 22 F -0.12 -5.53 16.07 44.97 0.72 -4.80 16 23 H 0.06 1.34 7.16 -2.38 -0.02 1.32 16 24 H 0.05 1.33 7.72 -2.39 -0.02 1.31 16 25 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.12 2.76 3.88 -2.55 -0.01 2.75 16 28 H 0.04 1.90 7.64 -2.39 -0.02 1.88 16 29 H 0.00 -0.04 7.34 -2.39 -0.02 -0.05 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.19 3.52 3.07 -2.91 -0.01 3.51 16 32 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 0.26 8.09 -2.39 -0.02 0.24 16 34 H 0.10 0.09 8.09 -2.38 -0.02 0.07 16 35 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -84.33 300.31 5.22 -79.11 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.12 Total: -1.12 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.21 Total: 14.74 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.79 Total: -101.81 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.06 Total: -33.96 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.72 Total: -4.80 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -84.33 5.22 -79.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864975520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -84.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds