Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38348 * 120.30335 * 2 1 4 4 N 1.31918 * 121.12774 * 180.02562 * 3 2 1 5 5 C 1.31947 * 121.84019 * 359.97438 * 4 3 2 6 6 F 1.35104 * 119.75601 * 179.97438 * 5 4 3 7 7 C 1.39892 * 120.48943 * 0.02562 * 5 4 3 8 8 C 1.47673 * 120.58291 * 180.02562 * 7 5 4 9 9 O 1.21580 * 119.99804 * 326.03769 * 8 7 5 10 10 N 1.34777 * 120.00504 * 146.03152 * 8 7 5 11 11 C 1.46507 * 119.99318 * 5.40949 * 10 8 7 12 12 C 1.46492 * 120.00289 * 185.40688 * 10 8 7 13 13 H 1.09001 * 109.47384 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.46835 * 120.00362 * 12 10 8 15 15 C 1.50697 * 109.47046 * 239.99853 * 12 10 8 16 16 H 1.07992 * 120.00249 * 0.02562 * 15 12 10 17 17 C 1.37884 * 119.99661 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00226 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99776 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46945 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47376 * 240.00161 * 19 17 15 23 23 C 1.38343 * 120.31335 * 179.72249 * 2 1 3 24 24 H 1.08997 * 109.46874 * 90.00500 * 1 2 3 25 25 H 1.09007 * 109.46766 * 209.99965 * 1 2 3 26 26 H 1.08997 * 109.47896 * 329.99967 * 1 2 3 27 27 H 1.08000 * 119.43640 * 0.02713 * 3 2 1 28 28 H 1.08992 * 109.46912 * 95.85217 * 11 10 8 29 29 H 1.09004 * 109.46798 * 215.84630 * 11 10 8 30 30 H 1.08996 * 109.47264 * 335.84649 * 11 10 8 31 31 H 1.08992 * 109.47545 * 59.99791 * 14 12 10 32 32 H 1.09003 * 109.46756 * 180.02562 * 14 12 10 33 33 H 1.09000 * 109.46931 * 299.99398 * 14 12 10 34 34 H 0.96997 * 119.99555 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.83744 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1944 0.0000 4 7 3.5241 1.2134 -0.0005 5 6 4.2363 0.1026 -0.0005 6 9 5.5856 0.1712 -0.0016 7 6 3.6045 -1.1455 -0.0006 8 6 4.3995 -2.3900 0.0000 9 8 5.4630 -2.4322 -0.5878 10 7 3.9464 -3.4789 0.6521 11 6 2.6133 -3.4668 1.2597 12 6 4.7867 -4.6746 0.7534 13 1 5.7347 -4.4966 0.2457 14 6 5.0494 -4.9900 2.2274 15 6 4.0819 -5.8400 0.1083 16 1 3.1059 -5.7035 -0.3334 17 6 4.6837 -7.0802 0.0810 18 7 5.8725 -7.2463 0.6183 19 14 3.8104 -8.5247 -0.7193 20 1 2.4957 -8.0781 -1.2462 21 1 4.6389 -9.0473 -1.8356 22 1 3.6026 -9.5968 0.2869 23 6 2.2053 -1.1943 0.0058 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3635 0.8899 0.5138 27 1 1.6609 2.1273 0.0004 28 1 1.8969 -3.9171 0.5728 29 1 2.6325 -4.0359 2.1892 30 1 2.3189 -2.4385 1.4693 31 1 4.1017 -5.1679 2.7354 32 1 5.6750 -5.8794 2.3027 33 1 5.5592 -4.1471 2.6940 34 1 6.2957 -8.1189 0.5994 35 1 1.6842 -2.1402 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865165082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = -25.101328 kcal Electronic energy + Delta-G solvation = -20350.845859 eV Core-core repulsion = 17071.478967 eV Total energy + Delta-G solvation = -3279.366892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.81011 -40.57569 -38.73248 -35.51845 -33.93873 -33.12766 -31.94342 -29.23281 -27.26307 -26.63335 -25.29738 -24.46330 -23.02379 -21.02435 -18.91411 -17.90467 -17.48242 -16.87360 -16.15389 -16.00308 -15.44003 -14.81590 -14.53350 -14.34887 -13.99803 -13.79197 -13.58039 -13.17445 -12.69275 -12.61784 -12.55166 -12.44992 -12.18003 -11.63373 -11.46018 -11.11580 -10.84573 -10.78444 -10.31966 -10.22580 -10.01144 -9.84321 -9.23198 -9.08545 -8.85889 -8.48099 -7.71862 -6.11788 -4.20224 0.58077 0.92635 3.07903 3.23140 3.31114 3.33254 3.42283 3.66851 3.79921 4.34587 4.38422 4.52668 4.62779 4.66874 5.07590 5.19906 5.33578 5.38768 5.42126 5.49311 5.69277 5.82592 5.87999 5.92503 6.12933 6.44384 6.69950 6.75559 6.97577 7.30391 7.41152 7.48530 7.64943 7.94383 8.11464 8.37391 8.73245 8.89557 9.46173 10.93705 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.005576 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.712742 B = 5020.243224 C = 5634.473063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.162 4.162 3 C 0.146 3.854 4 N -0.517 5.517 5 C 0.347 3.653 6 F -0.093 7.093 7 C -0.189 4.189 8 C 0.547 3.453 9 O -0.530 6.530 10 N -0.580 5.580 11 C 0.068 3.932 12 C 0.257 3.743 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.031 4.031 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 12.512 1.872 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.165 4.165 3 C -0.011 4.011 4 N -0.230 5.230 5 C 0.194 3.806 6 F -0.072 7.072 7 C -0.195 4.195 8 C 0.332 3.668 9 O -0.408 6.408 10 N -0.311 5.311 11 C -0.075 4.075 12 C 0.158 3.842 13 H 0.084 0.916 14 C -0.206 4.206 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.057 4.057 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.185 0.815 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.240 13.079 1.611 17.320 hybrid contribution -0.622 -1.580 -0.365 1.737 sum -11.862 11.498 1.246 16.567 Atomic orbital electron populations 1.20695 0.89199 1.03480 1.02949 1.20909 0.98248 0.93527 1.03767 1.22554 0.87548 0.98089 0.92944 1.67081 1.09298 1.30105 1.16545 1.18089 0.79094 0.88456 0.94985 1.91699 1.26396 1.96725 1.92351 1.21095 0.95354 0.94821 1.08276 1.17787 0.85597 0.82692 0.80760 1.90804 1.22870 1.83603 1.43520 1.48155 1.16856 1.14413 1.51667 1.22177 0.85181 1.00831 0.99323 1.19044 0.91463 0.79694 0.94005 0.91626 1.22107 1.00185 1.01432 0.96904 1.21303 1.04211 0.93337 1.37603 0.92172 1.24900 0.94895 0.98749 0.95230 1.69884 1.14399 1.23865 1.44299 0.86417 0.79594 0.82095 0.79126 1.19834 1.20864 1.20898 1.22227 0.91911 0.99934 0.91589 0.90622 0.90848 0.90948 0.81531 0.92365 0.90775 0.91681 0.94972 0.88569 0.96859 0.92642 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.03 36.01 0.36 -0.29 16 2 C -0.16 -1.62 5.89 -104.54 -0.62 -2.24 16 3 C 0.15 1.57 10.84 -17.47 -0.19 1.38 16 4 N -0.52 -7.70 10.36 -13.21 -0.14 -7.84 16 5 C 0.35 6.07 8.37 -16.88 -0.14 5.93 16 6 F -0.09 -1.83 16.12 2.25 0.04 -1.79 16 7 C -0.19 -3.24 5.46 -104.76 -0.57 -3.81 16 8 C 0.55 11.87 7.33 -12.41 -0.09 11.78 16 9 O -0.53 -13.76 15.40 5.30 0.08 -13.68 16 10 N -0.58 -12.34 2.75 -176.44 -0.49 -12.82 16 11 C 0.07 1.08 8.15 59.85 0.49 1.57 16 12 C 0.26 6.53 2.63 -69.08 -0.18 6.35 16 13 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 14 C -0.15 -3.49 8.93 37.16 0.33 -3.16 16 15 C -0.53 -13.97 8.37 -34.44 -0.29 -14.26 16 16 H 0.06 1.56 7.48 -52.49 -0.39 1.17 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.03 -0.40 7.21 -38.88 -0.28 -0.68 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 26 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.06 0.86 7.38 -51.93 -0.38 0.47 16 29 H 0.07 1.17 6.46 -51.93 -0.34 0.84 16 30 H 0.06 0.84 4.60 -51.93 -0.24 0.60 16 31 H 0.03 0.69 6.70 -51.93 -0.35 0.34 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.16 1.85 5.09 -52.49 -0.27 1.58 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -32.44 294.87 -5.61 -38.05 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.88 Total: -2.08 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.27 Total: 4.23 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.00 Total: -44.88 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.44 -5.61 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865165082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.949 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds