Wall clock time and date at job start Mon Mar 30 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38348 * 120.30335 * 2 1 4 4 N 1.31918 * 121.12774 * 180.02562 * 3 2 1 5 5 C 1.31947 * 121.84019 * 359.97438 * 4 3 2 6 6 F 1.35104 * 119.75601 * 179.97438 * 5 4 3 7 7 C 1.39892 * 120.48943 * 0.02562 * 5 4 3 8 8 C 1.47673 * 120.58291 * 180.02562 * 7 5 4 9 9 O 1.21580 * 119.99804 * 326.03769 * 8 7 5 10 10 N 1.34777 * 120.00504 * 146.03152 * 8 7 5 11 11 C 1.46507 * 119.99318 * 5.40949 * 10 8 7 12 12 C 1.46492 * 120.00289 * 185.40688 * 10 8 7 13 13 H 1.09001 * 109.47384 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.46835 * 120.00362 * 12 10 8 15 15 C 1.50697 * 109.47046 * 239.99853 * 12 10 8 16 16 H 1.07992 * 120.00249 * 0.02562 * 15 12 10 17 17 C 1.37884 * 119.99661 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00226 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99776 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46945 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47376 * 240.00161 * 19 17 15 23 23 C 1.38343 * 120.31335 * 179.72249 * 2 1 3 24 24 H 1.08997 * 109.46874 * 90.00500 * 1 2 3 25 25 H 1.09007 * 109.46766 * 209.99965 * 1 2 3 26 26 H 1.08997 * 109.47896 * 329.99967 * 1 2 3 27 27 H 1.08000 * 119.43640 * 0.02713 * 3 2 1 28 28 H 1.08992 * 109.46912 * 95.85217 * 11 10 8 29 29 H 1.09004 * 109.46798 * 215.84630 * 11 10 8 30 30 H 1.08996 * 109.47264 * 335.84649 * 11 10 8 31 31 H 1.08992 * 109.47545 * 59.99791 * 14 12 10 32 32 H 1.09003 * 109.46756 * 180.02562 * 14 12 10 33 33 H 1.09000 * 109.46931 * 299.99398 * 14 12 10 34 34 H 0.96997 * 119.99555 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.83744 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1944 0.0000 4 7 3.5241 1.2134 -0.0005 5 6 4.2363 0.1026 -0.0005 6 9 5.5856 0.1712 -0.0016 7 6 3.6045 -1.1455 -0.0006 8 6 4.3995 -2.3900 0.0000 9 8 5.4630 -2.4322 -0.5878 10 7 3.9464 -3.4789 0.6521 11 6 2.6133 -3.4668 1.2597 12 6 4.7867 -4.6746 0.7534 13 1 5.7347 -4.4966 0.2457 14 6 5.0494 -4.9900 2.2274 15 6 4.0819 -5.8400 0.1083 16 1 3.1059 -5.7035 -0.3334 17 6 4.6837 -7.0802 0.0810 18 7 5.8725 -7.2463 0.6183 19 14 3.8104 -8.5247 -0.7193 20 1 2.4957 -8.0781 -1.2462 21 1 4.6389 -9.0473 -1.8356 22 1 3.6026 -9.5968 0.2869 23 6 2.2053 -1.1943 0.0058 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3635 0.8899 0.5138 27 1 1.6609 2.1273 0.0004 28 1 1.8969 -3.9171 0.5728 29 1 2.6325 -4.0359 2.1892 30 1 2.3189 -2.4385 1.4693 31 1 4.1017 -5.1679 2.7354 32 1 5.6750 -5.8794 2.3027 33 1 5.5592 -4.1471 2.6940 34 1 6.2957 -8.1189 0.5994 35 1 1.6842 -2.1402 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865165082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:15 Heat of formation + Delta-G solvation = -47.380118 kcal Electronic energy + Delta-G solvation = -20351.811940 eV Core-core repulsion = 17071.478967 eV Total energy + Delta-G solvation = -3280.332973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.16227 -41.79599 -40.23864 -37.31145 -35.31272 -34.47572 -33.35128 -31.02314 -28.25229 -27.82490 -27.34131 -25.71699 -24.25879 -22.58025 -20.49779 -19.11680 -18.68208 -18.61562 -17.87106 -17.39914 -17.14271 -16.34731 -15.98642 -15.79685 -15.01600 -14.89156 -14.77537 -14.65745 -14.38221 -14.02195 -13.59587 -13.51589 -13.30175 -13.02190 -12.88320 -12.81888 -12.74895 -12.54070 -12.21802 -12.11942 -11.31995 -11.21159 -10.96988 -10.61952 -10.49939 -9.90041 -9.44278 -8.16217 -6.33358 -0.54342 -0.10594 1.41572 1.43616 1.54707 1.66535 2.06293 2.40481 2.44100 2.50167 3.12353 3.25183 3.48267 3.68778 3.76028 4.13081 4.25341 4.48222 4.59622 4.67008 4.70104 4.70802 4.83633 4.93896 4.97776 4.98922 5.18843 5.24630 5.41236 5.50890 5.56759 5.61837 5.96775 6.10748 6.43526 6.62635 6.73384 7.14888 7.39160 8.88951 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.005576 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.712742 B = 5020.243224 C = 5634.473063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C 0.154 3.846 4 N -0.529 5.529 5 C 0.315 3.685 6 F -0.121 7.121 7 C -0.207 4.207 8 C 0.538 3.462 9 O -0.592 6.592 10 N -0.585 5.585 11 C 0.063 3.937 12 C 0.260 3.740 13 H 0.007 0.993 14 C -0.133 4.133 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.969 3.031 20 H -0.261 1.261 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.031 4.031 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.217 0.783 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.017 0.983 34 H 0.265 0.735 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 13.518 2.131 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.003 4.003 4 N -0.243 5.243 5 C 0.163 3.837 6 F -0.101 7.101 7 C -0.214 4.214 8 C 0.326 3.674 9 O -0.474 6.474 10 N -0.314 5.314 11 C -0.079 4.079 12 C 0.158 3.842 13 H 0.025 0.975 14 C -0.192 4.192 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.056 4.056 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.233 0.767 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.951 14.098 1.897 21.373 hybrid contribution 0.706 -1.761 -0.451 1.950 sum -15.245 12.337 1.446 19.665 Atomic orbital electron populations 1.20881 0.85363 1.05586 1.04451 1.21390 1.00501 0.91806 0.99814 1.23524 0.86172 1.00531 0.90074 1.67172 1.11251 1.28871 1.17026 1.18302 0.78459 0.89512 0.97476 1.91615 1.28602 1.96907 1.92931 1.20719 0.96835 0.92149 1.11717 1.18510 0.85285 0.84070 0.79577 1.90752 1.25771 1.84784 1.46129 1.48121 1.18407 1.13137 1.51751 1.22519 0.82533 1.03414 0.99403 1.18657 0.89988 0.81293 0.94239 0.97504 1.21895 1.00813 1.00358 0.96115 1.21561 1.04419 0.93773 1.37722 0.91531 1.25790 0.95529 1.01599 0.95710 1.70038 1.15876 1.24509 1.45369 0.85341 0.78672 0.78620 0.77960 1.18466 1.21464 1.19892 1.22459 0.89778 1.02113 0.91254 0.89120 0.89547 0.88209 0.76710 0.90576 0.90542 0.88226 0.92706 0.91095 0.96414 0.92606 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 71.24 0.71 0.11 16 2 C -0.13 -2.02 5.89 -19.81 -0.12 -2.14 16 3 C 0.15 2.66 10.84 84.71 0.92 3.58 16 4 N -0.53 -14.99 10.36 -195.72 -2.03 -17.02 16 5 C 0.32 11.26 8.37 85.08 0.71 11.97 16 6 F -0.12 -5.15 16.12 44.97 0.72 -4.42 16 7 C -0.21 -7.14 5.46 -19.95 -0.11 -7.25 16 8 C 0.54 24.48 7.33 86.74 0.64 25.12 16 9 O -0.59 -33.34 15.40 -3.97 -0.06 -33.40 16 10 N -0.59 -25.37 2.75 -830.40 -2.29 -27.65 16 11 C 0.06 1.86 8.15 127.77 1.04 2.90 16 12 C 0.26 13.75 2.63 44.25 0.12 13.87 16 13 H 0.01 0.45 6.91 -2.39 -0.02 0.43 16 14 C -0.13 -6.48 8.93 71.98 0.64 -5.84 16 15 C -0.54 -28.89 8.37 25.60 0.21 -28.68 16 16 H 0.07 3.41 7.48 -2.91 -0.02 3.39 16 17 C 0.01 0.72 5.30 84.66 0.45 1.17 16 18 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 19 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.03 -0.70 7.21 22.73 0.16 -0.54 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.09 0.38 8.09 -2.38 -0.02 0.36 16 26 H 0.10 0.14 8.09 -2.39 -0.02 0.12 16 27 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.08 2.01 7.38 -2.39 -0.02 1.99 16 29 H 0.08 2.25 6.46 -2.38 -0.02 2.23 16 30 H 0.10 2.26 4.60 -2.39 -0.01 2.25 16 31 H 0.05 2.35 6.70 -2.39 -0.02 2.33 16 32 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.18 3.39 5.09 -2.91 -0.01 3.38 16 Total: -1.00 -78.08 294.87 5.13 -72.95 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.12 Total: 3.67 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.38 Total: 14.28 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.07 Total: -97.59 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.72 Total: -4.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -78.08 5.13 -72.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865165082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.575 kcal (2) G-P(sol) polarization free energy of solvation -78.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds