Wall clock time and date at job start Mon Mar 30 2020 05:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38340 * 120.30891 * 2 1 4 4 N 1.31918 * 121.13271 * 180.02562 * 3 2 1 5 5 C 1.31952 * 121.83972 * 359.97438 * 4 3 2 6 6 F 1.35092 * 119.75558 * 180.02562 * 5 4 3 7 7 C 1.39893 * 120.48112 * 0.02562 * 5 4 3 8 8 C 1.47679 * 120.57107 * 179.97438 * 7 5 4 9 9 O 1.21565 * 120.00457 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99884 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00383 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47268 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46792 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.46856 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46948 * 120.00256 * 18 16 14 21 21 H 1.48501 * 109.47194 * 240.00123 * 18 16 14 22 22 C 1.38342 * 120.31176 * 179.71717 * 2 1 3 23 23 H 1.09001 * 109.46953 * 90.00283 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99881 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00512 * 1 2 3 26 26 H 1.07998 * 119.43404 * 0.02562 * 3 2 1 27 27 H 0.97004 * 119.99997 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.46681 * 300.00072 * 11 10 8 29 29 H 1.09003 * 109.46954 * 59.99902 * 11 10 8 30 30 H 1.09004 * 109.46702 * 299.99861 * 12 11 10 31 31 H 1.08998 * 109.46717 * 60.00023 * 12 11 10 32 32 H 1.09003 * 109.46732 * 299.99589 * 13 12 11 33 33 H 1.08997 * 109.47191 * 60.00115 * 13 12 11 34 34 H 0.97006 * 120.00048 * 180.02562 * 17 16 14 35 35 H 1.08003 * 120.83832 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1943 0.0000 4 7 3.5243 1.2133 -0.0005 5 6 4.2364 0.1024 -0.0005 6 9 5.5856 0.1710 -0.0005 7 6 3.6045 -1.1456 -0.0006 8 6 4.3995 -2.3901 -0.0011 9 8 5.6140 -2.3356 -0.0012 10 7 3.7787 -3.5864 -0.0017 11 6 4.5673 -4.8210 -0.0017 12 6 3.6262 -6.0274 -0.0030 13 6 4.4499 -7.3167 -0.0024 14 6 3.5230 -8.5049 -0.0030 15 1 2.4534 -8.3554 -0.0042 16 6 4.0405 -9.7829 -0.0032 17 7 5.3429 -9.9650 -0.0022 18 14 2.8915 -11.2557 -0.0047 19 1 1.4831 -10.7848 -0.0062 20 1 3.1400 -12.0761 -1.2174 21 1 3.1380 -12.0771 1.2077 22 6 2.2053 -1.1943 0.0059 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6610 2.1272 0.0004 27 1 2.8096 -3.6299 -0.0021 28 1 5.1963 -4.8503 -0.8915 29 1 5.1956 -4.8508 0.8885 30 1 2.9970 -5.9982 0.8866 31 1 2.9983 -5.9973 -0.8935 32 1 5.0795 -7.3460 -0.8918 33 1 5.0776 -7.3465 0.8883 34 1 5.7070 -10.8641 -0.0027 35 1 1.6841 -2.1403 0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865166807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:10 Heat of formation + Delta-G solvation = -61.487628 kcal Electronic energy + Delta-G solvation = -18970.720799 eV Core-core repulsion = 15689.776078 eV Total energy + Delta-G solvation = -3280.944721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.10458 -40.79817 -39.17302 -35.54759 -34.14677 -33.43866 -32.59572 -31.02304 -27.49713 -26.95975 -25.08153 -23.60468 -22.40183 -20.91066 -20.19626 -18.41388 -17.79024 -17.38408 -16.40175 -16.38660 -15.45688 -15.28071 -14.98588 -14.51760 -14.34835 -14.28445 -13.95259 -13.85822 -13.36589 -13.01521 -12.75756 -12.55319 -12.33179 -11.89126 -11.81358 -10.95882 -10.81177 -10.61631 -10.45352 -10.37727 -9.93377 -9.92927 -9.45089 -9.22429 -9.15027 -8.89029 -8.41088 -6.05295 -4.08693 0.15417 0.59635 2.63341 2.99054 3.27443 3.28745 3.35185 3.36759 3.38233 4.00515 4.19923 4.24036 4.36908 4.41536 4.80668 5.06671 5.11780 5.12262 5.30291 5.30668 5.56161 5.60771 5.64214 5.70039 6.07706 6.12402 6.33089 6.52151 6.72597 6.92910 7.14455 7.50056 7.59491 7.71265 7.93021 8.16714 8.33875 8.98115 9.55793 11.05996 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.003313 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.228166 B = 8449.160314 C = 9338.334851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.157 4.157 3 C 0.156 3.844 4 N -0.515 5.515 5 C 0.357 3.643 6 F -0.086 7.086 7 C -0.201 4.201 8 C 0.554 3.446 9 O -0.522 6.522 10 N -0.717 5.717 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.019 4.019 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.172 0.828 27 H 0.397 0.603 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 21.193 -0.004 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.160 4.160 3 C -0.001 4.001 4 N -0.229 5.229 5 C 0.203 3.797 6 F -0.065 7.065 7 C -0.208 4.208 8 C 0.338 3.662 9 O -0.399 6.399 10 N -0.368 5.368 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.045 4.045 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.189 0.811 27 H 0.231 0.769 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.913 21.843 -0.002 23.987 hybrid contribution -1.135 -1.657 -0.007 2.009 sum -11.048 20.186 -0.009 23.012 Atomic orbital electron populations 1.20736 0.88883 1.03802 1.03198 1.20920 0.98492 0.93414 1.03126 1.22676 0.87503 0.98317 0.91627 1.67158 1.09336 1.30037 1.16326 1.18144 0.79327 0.88383 0.93865 1.91734 1.26030 1.96674 1.92016 1.20931 0.95070 0.94302 1.10499 1.17786 0.87432 0.83067 0.77887 1.90863 1.13023 1.87021 1.48956 1.46086 1.10504 1.05925 1.74260 1.21746 0.94764 0.81676 1.02447 1.21905 0.98327 0.94735 1.00925 1.19037 0.95138 0.89500 0.97766 1.21224 0.93008 0.90895 1.51005 0.92585 1.25035 0.95044 0.99160 0.95243 1.69972 1.10872 1.21840 1.50490 0.86524 0.81001 0.82750 0.77634 1.19759 1.20985 1.20979 1.21674 0.91533 0.99432 0.91815 0.90363 0.90683 0.90711 0.81137 0.76874 0.91347 0.91340 0.92643 0.92639 0.96193 0.96190 0.92932 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.03 36.01 0.36 -0.03 16 2 C -0.16 -1.07 5.89 -104.54 -0.62 -1.68 16 3 C 0.16 1.22 10.84 -17.48 -0.19 1.03 16 4 N -0.52 -6.06 10.36 -13.22 -0.14 -6.20 16 5 C 0.36 4.88 8.41 -16.88 -0.14 4.74 16 6 F -0.09 -1.38 15.59 2.25 0.04 -1.35 16 7 C -0.20 -2.49 5.90 -104.76 -0.62 -3.11 16 8 C 0.55 8.53 7.78 -12.40 -0.10 8.43 16 9 O -0.52 -10.22 15.37 5.31 0.08 -10.14 16 10 N -0.72 -9.94 5.51 -61.30 -0.34 -10.28 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.95 16 12 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.02 -0.16 9.32 -38.88 -0.36 -0.52 16 23 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 25 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 26 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.40 4.14 6.58 -40.82 -0.27 3.87 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 0.86 6.52 -52.48 -0.34 0.52 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -33.88 310.01 -6.72 -40.61 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.37 Total: -3.36 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.38 Total: -4.30 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.26 Total: -42.28 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.88 -6.72 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865166807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.882 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds