Wall clock time and date at job start Mon Mar 30 2020 05:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38340 * 120.30891 * 2 1 4 4 N 1.31918 * 121.13271 * 180.02562 * 3 2 1 5 5 C 1.31952 * 121.83972 * 359.97438 * 4 3 2 6 6 F 1.35092 * 119.75558 * 180.02562 * 5 4 3 7 7 C 1.39893 * 120.48112 * 0.02562 * 5 4 3 8 8 C 1.47679 * 120.57107 * 179.97438 * 7 5 4 9 9 O 1.21565 * 120.00457 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99884 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00383 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47268 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46792 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.46856 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46948 * 120.00256 * 18 16 14 21 21 H 1.48501 * 109.47194 * 240.00123 * 18 16 14 22 22 C 1.38342 * 120.31176 * 179.71717 * 2 1 3 23 23 H 1.09001 * 109.46953 * 90.00283 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99881 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00512 * 1 2 3 26 26 H 1.07998 * 119.43404 * 0.02562 * 3 2 1 27 27 H 0.97004 * 119.99997 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.46681 * 300.00072 * 11 10 8 29 29 H 1.09003 * 109.46954 * 59.99902 * 11 10 8 30 30 H 1.09004 * 109.46702 * 299.99861 * 12 11 10 31 31 H 1.08998 * 109.46717 * 60.00023 * 12 11 10 32 32 H 1.09003 * 109.46732 * 299.99589 * 13 12 11 33 33 H 1.08997 * 109.47191 * 60.00115 * 13 12 11 34 34 H 0.97006 * 120.00048 * 180.02562 * 17 16 14 35 35 H 1.08003 * 120.83832 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1943 0.0000 4 7 3.5243 1.2133 -0.0005 5 6 4.2364 0.1024 -0.0005 6 9 5.5856 0.1710 -0.0005 7 6 3.6045 -1.1456 -0.0006 8 6 4.3995 -2.3901 -0.0011 9 8 5.6140 -2.3356 -0.0012 10 7 3.7787 -3.5864 -0.0017 11 6 4.5673 -4.8210 -0.0017 12 6 3.6262 -6.0274 -0.0030 13 6 4.4499 -7.3167 -0.0024 14 6 3.5230 -8.5049 -0.0030 15 1 2.4534 -8.3554 -0.0042 16 6 4.0405 -9.7829 -0.0032 17 7 5.3429 -9.9650 -0.0022 18 14 2.8915 -11.2557 -0.0047 19 1 1.4831 -10.7848 -0.0062 20 1 3.1400 -12.0761 -1.2174 21 1 3.1380 -12.0771 1.2077 22 6 2.2053 -1.1943 0.0059 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6610 2.1272 0.0004 27 1 2.8096 -3.6299 -0.0021 28 1 5.1963 -4.8503 -0.8915 29 1 5.1956 -4.8508 0.8885 30 1 2.9970 -5.9982 0.8866 31 1 2.9983 -5.9973 -0.8935 32 1 5.0795 -7.3460 -0.8918 33 1 5.0776 -7.3465 0.8883 34 1 5.7070 -10.8641 -0.0027 35 1 1.6841 -2.1403 0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865166807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:10 Heat of formation + Delta-G solvation = -85.265004 kcal Electronic energy + Delta-G solvation = -18971.751863 eV Core-core repulsion = 15689.776078 eV Total energy + Delta-G solvation = -3281.975785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.14927 -41.67419 -40.30053 -37.05770 -35.35856 -34.68484 -33.71035 -32.58151 -28.72767 -27.96827 -26.11379 -25.01595 -23.49022 -22.39144 -21.52181 -19.33714 -18.74466 -18.49947 -18.28294 -17.42177 -16.79713 -16.64966 -16.39959 -15.70760 -15.42099 -15.41590 -14.84361 -14.76843 -14.38650 -14.11509 -13.76084 -13.63912 -13.57895 -13.31159 -12.90180 -12.78393 -12.55466 -12.35287 -11.69026 -11.68933 -11.36698 -11.18945 -11.18360 -10.75337 -10.55799 -10.26501 -9.87968 -8.18980 -6.30474 -0.66563 -0.12084 1.42960 1.43061 1.56150 1.62040 1.88533 2.40426 2.43448 2.48610 3.15312 3.24414 3.45384 3.60993 3.74843 4.07842 4.19039 4.19315 4.43139 4.52848 4.61837 4.67119 4.92569 4.92658 4.94963 5.15523 5.16636 5.22587 5.31193 5.51120 5.52684 5.70702 5.84767 6.21870 6.34236 6.43808 6.87711 7.02599 7.39444 8.93411 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.003313 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.228166 B = 8449.160314 C = 9338.334851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C 0.158 3.842 4 N -0.535 5.535 5 C 0.322 3.678 6 F -0.115 7.115 7 C -0.215 4.215 8 C 0.553 3.447 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.128 3.872 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.538 4.538 15 H 0.070 0.930 16 C -0.005 4.005 17 N -0.937 5.937 18 Si 0.968 3.032 19 H -0.255 1.255 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.013 4.013 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.212 0.788 27 H 0.417 0.583 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.073 0.927 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 21.894 0.005 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.002 3.998 4 N -0.250 5.250 5 C 0.169 3.831 6 F -0.094 7.094 7 C -0.222 4.222 8 C 0.340 3.660 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.005 3.995 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.179 1.179 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.039 4.039 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.228 0.772 27 H 0.255 0.745 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.071 0.929 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.405 22.560 0.006 26.766 hybrid contribution 0.139 -1.773 -0.011 1.779 sum -14.266 20.786 -0.004 25.211 Atomic orbital electron populations 1.20879 0.85719 1.05408 1.04483 1.21346 1.00372 0.92150 0.99948 1.23500 0.86255 1.00608 0.89486 1.67197 1.11209 1.29415 1.17131 1.18423 0.78660 0.89646 0.96344 1.91649 1.28228 1.96875 1.92630 1.20676 0.96483 0.92015 1.13022 1.18262 0.87073 0.84147 0.76563 1.90833 1.15494 1.87797 1.51357 1.45756 1.11296 1.04469 1.73686 1.21343 0.94475 0.82677 1.01049 1.21607 0.97686 0.91999 1.02561 1.18960 0.95074 0.92506 0.95079 1.21716 0.93957 0.91752 1.50199 0.91212 1.26044 0.96638 1.02740 0.94853 1.70124 1.13111 1.22629 1.51833 0.85356 0.79410 0.78509 0.77497 1.17892 1.20756 1.20745 1.22052 0.89616 1.01650 0.90535 0.88970 0.89583 0.88741 0.77181 0.74460 0.92952 0.92939 0.90874 0.90875 0.99019 0.99012 0.92874 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.18 10.03 71.24 0.71 0.53 16 2 C -0.14 -1.29 5.89 -19.81 -0.12 -1.41 16 3 C 0.16 1.97 10.84 84.70 0.92 2.89 16 4 N -0.54 -12.19 10.36 -195.73 -2.03 -14.22 16 5 C 0.32 9.06 8.41 85.08 0.72 9.78 16 6 F -0.11 -4.01 15.59 44.97 0.70 -3.31 16 7 C -0.22 -5.24 5.90 -19.95 -0.12 -5.35 16 8 C 0.55 17.34 7.78 86.74 0.67 18.02 16 9 O -0.57 -23.87 15.37 -3.92 -0.06 -23.93 16 10 N -0.70 -18.81 5.51 -466.12 -2.57 -21.38 16 11 C 0.13 4.44 5.67 86.38 0.49 4.93 16 12 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 13 C 0.02 1.10 4.97 29.85 0.15 1.24 16 14 C -0.54 -29.33 9.11 25.60 0.23 -29.09 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 18 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.01 -0.18 9.32 22.72 0.21 0.03 16 23 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 24 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 25 H 0.09 -0.12 8.09 -2.39 -0.02 -0.14 16 26 H 0.21 0.78 8.06 -2.91 -0.02 0.76 16 27 H 0.42 7.55 6.58 -92.70 -0.61 6.94 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.18 1.27 6.52 -2.91 -0.02 1.25 16 Total: -1.00 -78.28 310.01 3.35 -74.92 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 0.50 Total: 1.24 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.50 Total: -1.78 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -4.31 Total: -92.21 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.70 Total: -3.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.28 3.35 -74.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865166807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.341 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds