Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.50699 * 109.47014 * 90.00069 * 11 10 9 13 13 C 1.38671 * 120.41999 * 269.72104 * 12 11 10 14 14 C 1.38629 * 118.42416 * 179.78139 * 13 12 11 15 15 C 1.38230 * 119.15562 * 0.51736 * 14 13 12 16 16 N 1.31851 * 120.76708 * 359.72674 * 15 14 13 17 17 C 1.31892 * 121.72574 * 359.97438 * 16 15 14 18 18 C 1.34779 * 119.99786 * 90.00213 * 10 9 7 19 19 O 1.21287 * 119.99824 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00366 * 359.97438 * 18 10 9 21 21 C 1.52998 * 109.47065 * 180.02562 * 20 18 10 22 22 F 1.39901 * 109.46874 * 179.97438 * 21 20 18 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 27 27 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 28 28 H 1.08005 * 120.78945 * 0.02562 * 13 12 11 29 29 H 1.07994 * 120.42378 * 180.22394 * 14 13 12 30 30 H 1.07998 * 119.61423 * 179.74009 * 15 14 13 31 31 H 1.08000 * 119.61937 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.46928 * 300.00314 * 20 18 10 33 33 H 1.08997 * 109.46761 * 60.00026 * 20 18 10 34 34 H 1.08994 * 109.47197 * 299.99886 * 21 20 18 35 35 H 1.08997 * 109.47675 * 60.00138 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9234 -3.4363 -1.7038 13 6 3.8306 -2.3110 -2.5088 14 6 5.0006 -1.6665 -2.8794 15 6 6.2130 -2.1698 -2.4463 16 7 6.2636 -3.2456 -1.6856 17 6 5.1708 -3.8807 -1.3089 18 6 2.6400 -4.1254 1.1659 19 8 3.4285 -5.0469 1.1661 20 6 2.1497 -3.5529 2.4709 21 6 2.7953 -4.3088 3.6339 22 9 2.3406 -3.7770 4.8454 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 2.9082 -5.2268 -1.1400 27 1 1.9071 -4.0547 -2.0302 28 1 2.8693 -1.9430 -2.8359 29 1 4.9657 -0.7852 -3.5026 30 1 7.1293 -1.6760 -2.7342 31 1 5.2519 -4.7586 -0.6850 32 1 2.4193 -2.4983 2.5291 33 1 1.0660 -3.6546 2.5279 34 1 2.5261 -5.3634 3.5759 35 1 3.8790 -4.2068 3.5768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900403221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -62.495212 kcal Electronic energy + Delta-G solvation = -20391.491942 eV Core-core repulsion = 17110.503529 eV Total energy + Delta-G solvation = -3280.988413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.30658 -39.96841 -38.94972 -35.39260 -33.08792 -32.19385 -31.65280 -30.85644 -27.63652 -26.15056 -23.61055 -23.12600 -22.77926 -21.52005 -18.52172 -16.94700 -16.72808 -16.61060 -15.97883 -15.78405 -15.69282 -15.03754 -14.83114 -14.33161 -14.13454 -14.05768 -13.33303 -13.01889 -12.64980 -12.57226 -12.31817 -12.03226 -11.84272 -11.58569 -11.19133 -11.07930 -10.95861 -10.68192 -10.44290 -10.31135 -9.91263 -9.41032 -9.23576 -9.07851 -8.69050 -8.55365 -7.91467 -6.27716 -4.34674 1.47690 1.74354 3.17348 3.18512 3.23557 3.28386 3.72851 4.24431 4.31874 4.81823 5.01731 5.06025 5.08475 5.18747 5.21263 5.29752 5.38098 5.45060 5.50330 5.71383 5.91659 5.96199 6.08280 6.12755 6.19125 6.39054 6.55978 6.58424 6.75518 7.03416 7.11887 7.34808 7.66849 7.94312 8.12640 8.34802 8.66675 8.82311 9.33616 10.79055 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.009789 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.100402 B = 2859.808713 C = 4446.795797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.235 3.765 10 N -0.590 5.590 11 C 0.164 3.836 12 C -0.142 4.142 13 C -0.035 4.035 14 C -0.181 4.181 15 C 0.088 3.912 16 N -0.496 5.496 17 C 0.112 3.888 18 C 0.524 3.476 19 O -0.574 6.574 20 C -0.169 4.169 21 C 0.078 3.922 22 F -0.222 7.222 23 H 0.266 0.734 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -5.032 -2.657 6.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.116 3.884 10 N -0.319 5.319 11 C 0.040 3.960 12 C -0.145 4.145 13 C -0.062 4.062 14 C -0.201 4.201 15 C -0.069 4.069 16 N -0.205 5.205 17 C -0.045 4.045 18 C 0.313 3.687 19 O -0.456 6.456 20 C -0.209 4.209 21 C 0.023 3.977 22 F -0.203 7.203 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.948 -5.671 -2.369 7.891 hybrid contribution -0.538 1.784 -0.287 1.885 sum 4.410 -3.888 -2.656 6.451 Atomic orbital electron populations 1.69903 1.05946 1.27494 1.49421 1.24897 0.94773 0.99143 0.94702 0.86648 0.79648 0.82844 0.78979 1.20051 1.21118 1.20101 1.21392 0.93479 0.90219 1.52250 0.92159 1.19530 0.87324 0.82677 0.98895 1.48263 1.44717 1.35157 1.03787 1.20122 0.92651 0.96800 0.86412 1.21219 0.96857 0.97847 0.98607 1.21544 0.98971 0.92337 0.93308 1.22071 0.93731 1.01418 1.02866 1.22631 0.97381 0.92767 0.94146 1.67672 1.32586 1.08508 1.11707 1.22746 0.87340 0.98542 0.95833 1.20186 0.80694 0.82150 0.85691 1.90597 1.36249 1.30693 1.88046 1.22144 1.03088 1.03499 0.92145 1.21680 0.99712 0.97618 0.78691 1.92742 1.91304 1.88777 1.47503 0.92396 0.94112 0.94505 0.89796 0.89874 0.84487 0.85389 0.83582 0.82788 0.86750 0.88112 0.90481 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 13.29 55.43 0.74 -22.60 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -12.86 8.75 -34.44 -0.30 -13.16 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.24 5.09 5.01 -5.19 -0.03 5.06 16 10 N -0.59 -11.24 2.44 -176.43 -0.43 -11.67 16 11 C 0.16 2.74 5.60 -5.19 -0.03 2.72 16 12 C -0.14 -2.47 5.48 -104.48 -0.57 -3.04 16 13 C -0.04 -0.59 9.11 -39.28 -0.36 -0.95 16 14 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 15 C 0.09 1.38 11.18 -17.55 -0.20 1.18 16 16 N -0.50 -8.82 10.36 -13.25 -0.14 -8.96 16 17 C 0.11 2.00 10.86 -17.55 -0.19 1.81 16 18 C 0.52 9.93 7.67 -10.99 -0.08 9.84 16 19 O -0.57 -11.40 15.12 5.55 0.08 -11.32 16 20 C -0.17 -2.92 4.71 -27.88 -0.13 -3.05 16 21 C 0.08 1.21 6.84 37.16 0.25 1.46 16 22 F -0.22 -3.68 17.36 2.25 0.04 -3.64 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 25 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 26 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 27 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 28 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.15 2.72 7.61 -52.49 -0.40 2.32 16 32 H 0.11 2.16 8.00 -51.93 -0.42 1.75 16 33 H 0.10 1.66 7.40 -51.93 -0.38 1.27 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -27.62 309.06 -6.58 -34.20 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.38 Total: 4.06 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.13 Total: 0.28 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.17 Total: -43.22 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.62 -6.58 -34.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900403221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.299 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds