Wall clock time and date at job start Mon Mar 30 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.50699 * 109.47014 * 90.00069 * 11 10 9 13 13 C 1.38671 * 120.41999 * 269.72104 * 12 11 10 14 14 C 1.38629 * 118.42416 * 179.78139 * 13 12 11 15 15 C 1.38230 * 119.15562 * 0.51736 * 14 13 12 16 16 N 1.31851 * 120.76708 * 359.72674 * 15 14 13 17 17 C 1.31892 * 121.72574 * 359.97438 * 16 15 14 18 18 C 1.34779 * 119.99786 * 90.00213 * 10 9 7 19 19 O 1.21287 * 119.99824 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00366 * 359.97438 * 18 10 9 21 21 C 1.52998 * 109.47065 * 180.02562 * 20 18 10 22 22 F 1.39901 * 109.46874 * 179.97438 * 21 20 18 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 27 27 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 28 28 H 1.08005 * 120.78945 * 0.02562 * 13 12 11 29 29 H 1.07994 * 120.42378 * 180.22394 * 14 13 12 30 30 H 1.07998 * 119.61423 * 179.74009 * 15 14 13 31 31 H 1.08000 * 119.61937 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.46928 * 300.00314 * 20 18 10 33 33 H 1.08997 * 109.46761 * 60.00026 * 20 18 10 34 34 H 1.08994 * 109.47197 * 299.99886 * 21 20 18 35 35 H 1.08997 * 109.47675 * 60.00138 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9234 -3.4363 -1.7038 13 6 3.8306 -2.3110 -2.5088 14 6 5.0006 -1.6665 -2.8794 15 6 6.2130 -2.1698 -2.4463 16 7 6.2636 -3.2456 -1.6856 17 6 5.1708 -3.8807 -1.3089 18 6 2.6400 -4.1254 1.1659 19 8 3.4285 -5.0469 1.1661 20 6 2.1497 -3.5529 2.4709 21 6 2.7953 -4.3088 3.6339 22 9 2.3406 -3.7770 4.8454 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 2.9082 -5.2268 -1.1400 27 1 1.9071 -4.0547 -2.0302 28 1 2.8693 -1.9430 -2.8359 29 1 4.9657 -0.7852 -3.5026 30 1 7.1293 -1.6760 -2.7342 31 1 5.2519 -4.7586 -0.6850 32 1 2.4193 -2.4983 2.5291 33 1 1.0660 -3.6546 2.5279 34 1 2.5261 -5.3634 3.5759 35 1 3.8790 -4.2068 3.5768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900403221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:44 Heat of formation + Delta-G solvation = -76.866304 kcal Electronic energy + Delta-G solvation = -20392.115120 eV Core-core repulsion = 17110.503529 eV Total energy + Delta-G solvation = -3281.611590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.60869 -41.34306 -40.38939 -36.95781 -34.80508 -33.72403 -32.97580 -32.20391 -29.36108 -27.57266 -25.18157 -24.48546 -24.30499 -22.82958 -20.02879 -18.70887 -18.21465 -17.95746 -17.34074 -17.23656 -17.04688 -16.51569 -16.39126 -15.78224 -15.57883 -15.42804 -14.66053 -14.39979 -14.28599 -13.96247 -13.88409 -13.54892 -13.32302 -13.23678 -12.77449 -12.63559 -12.50239 -12.24653 -11.97655 -11.76444 -11.69331 -10.92431 -10.65257 -10.52167 -10.40154 -9.90585 -9.50095 -8.19374 -6.30362 0.19332 0.43191 1.39053 1.42954 1.47771 1.68414 2.25688 2.42331 2.99607 3.12980 3.57029 3.60344 3.73111 3.90636 3.95946 3.98608 4.14135 4.16812 4.20741 4.47479 4.58495 4.66575 4.73608 4.81303 4.88348 4.92224 5.08033 5.23218 5.28631 5.44569 5.65950 5.79421 5.84991 6.07732 6.51134 6.81635 7.05759 7.23668 7.41688 8.86097 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.009789 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.100402 B = 2859.808713 C = 4446.795797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.249 3.751 10 N -0.591 5.591 11 C 0.162 3.838 12 C -0.150 4.150 13 C -0.048 4.048 14 C -0.179 4.179 15 C 0.086 3.914 16 N -0.515 5.515 17 C 0.100 3.900 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.165 4.165 21 C 0.085 3.915 22 F -0.227 7.227 23 H 0.266 0.734 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -4.682 -3.125 7.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.066 0.934 9 C 0.129 3.871 10 N -0.320 5.320 11 C 0.039 3.961 12 C -0.153 4.153 13 C -0.075 4.075 14 C -0.199 4.199 15 C -0.071 4.071 16 N -0.224 5.224 17 C -0.056 4.056 18 C 0.310 3.690 19 O -0.465 6.465 20 C -0.205 4.205 21 C 0.030 3.970 22 F -0.209 7.209 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.197 0.803 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.722 -5.336 -2.843 8.324 hybrid contribution -0.730 1.659 -0.172 1.821 sum 4.991 -3.678 -3.015 6.894 Atomic orbital electron populations 1.69975 1.06909 1.27961 1.50767 1.25437 0.95295 1.01515 0.94828 0.85908 0.78647 0.80167 0.78832 1.19178 1.21050 1.20706 1.21463 0.92812 0.91212 1.51064 0.93419 1.19201 0.87288 0.82658 0.97987 1.48214 1.44411 1.34568 1.04834 1.20273 0.93011 0.97047 0.85775 1.21234 0.96751 0.98269 0.99069 1.21682 0.99626 0.92529 0.93630 1.22400 0.93110 1.01873 1.02477 1.23200 0.98862 0.92006 0.93064 1.67680 1.32679 1.09494 1.12547 1.22718 0.87726 0.98816 0.96356 1.20417 0.80452 0.82010 0.86073 1.90591 1.36549 1.31103 1.88208 1.22108 1.03683 1.02513 0.92223 1.21667 0.99637 0.98086 0.77599 1.92732 1.91384 1.88963 1.47773 0.92482 0.94976 0.95256 0.89004 0.88458 0.84658 0.82711 0.80279 0.83353 0.88547 0.87422 0.88777 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.77 13.29 21.45 0.28 -47.49 16 2 C 0.03 1.48 5.46 84.65 0.46 1.94 16 3 Si 0.94 40.26 29.54 68.60 2.03 42.29 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -25.06 8.75 25.60 0.22 -24.84 16 8 H 0.05 2.38 7.60 -2.91 -0.02 2.36 16 9 C 0.25 10.70 5.01 85.64 0.43 11.13 16 10 N -0.59 -22.19 2.44 -830.50 -2.03 -24.22 16 11 C 0.16 5.30 5.60 85.63 0.48 5.78 16 12 C -0.15 -5.09 5.48 -19.77 -0.11 -5.19 16 13 C -0.05 -1.56 9.11 22.47 0.20 -1.36 16 14 C -0.18 -5.14 10.11 22.36 0.23 -4.91 16 15 C 0.09 2.48 11.18 84.69 0.95 3.43 16 16 N -0.51 -17.63 10.36 -195.84 -2.03 -19.66 16 17 C 0.10 3.51 10.86 84.67 0.92 4.43 16 18 C 0.52 19.38 7.67 87.66 0.67 20.06 16 19 O -0.58 -22.59 15.12 -3.05 -0.05 -22.63 16 20 C -0.17 -5.61 4.71 29.85 0.14 -5.47 16 21 C 0.09 2.53 6.84 71.98 0.49 3.02 16 22 F -0.23 -7.26 17.36 44.97 0.78 -6.48 16 23 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 24 H 0.03 1.45 6.44 -2.39 -0.02 1.43 16 25 H 0.03 1.31 7.89 -2.39 -0.02 1.29 16 26 H 0.09 2.84 7.37 -2.39 -0.02 2.83 16 27 H 0.10 2.86 7.85 -2.39 -0.02 2.84 16 28 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.15 5.23 7.61 -2.91 -0.02 5.21 16 32 H 0.10 3.64 8.00 -2.39 -0.02 3.63 16 33 H 0.11 3.48 7.40 -2.39 -0.02 3.46 16 34 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 35 H 0.08 2.36 8.10 -2.39 -0.02 2.35 16 Total: -1.00 -56.46 309.06 5.17 -51.29 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.09 Total: 18.89 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.09 Total: 8.00 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.77 Total: -91.37 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.78 Total: -6.48 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -56.46 5.17 -51.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900403221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -56.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds