Wall clock time and date at job start Mon Mar 30 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48502 * 109.46873 * 269.99850 * 3 2 1 5 5 H 1.48504 * 109.47057 * 29.99579 * 3 2 1 6 6 H 1.48496 * 109.47551 * 149.99856 * 3 2 1 7 7 C 1.37872 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00057 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99721 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00155 * 10 9 7 19 19 O 1.21282 * 120.00051 * 359.97438 * 18 10 9 20 20 C 1.50702 * 119.99842 * 180.02562 * 18 10 9 21 21 C 1.52999 * 109.47077 * 179.97438 * 20 18 10 22 22 F 1.39903 * 109.47141 * 180.02562 * 21 20 18 23 23 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47083 * 59.99449 * 9 7 2 25 25 H 1.08997 * 109.46896 * 299.99329 * 9 7 2 26 26 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 27 27 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 28 28 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 29 29 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 30 30 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 31 31 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 32 32 H 1.08995 * 109.47002 * 299.99465 * 20 18 10 33 33 H 1.09002 * 109.47601 * 60.00005 * 20 18 10 34 34 H 1.09005 * 109.46870 * 299.99581 * 21 20 18 35 35 H 1.08996 * 109.47397 * 59.99568 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 3.9223 -3.4369 1.7042 13 6 3.8177 -2.3774 2.5858 14 6 4.9679 -1.7139 2.9838 15 6 6.1848 -2.1362 2.4701 16 6 6.2113 -3.2036 1.5929 17 7 5.0971 -3.8145 1.2398 18 6 2.6409 -4.1248 -1.1667 19 8 2.2465 -3.6642 -2.2170 20 6 3.6198 -5.2706 -1.1667 21 6 3.9508 -5.6586 -2.6091 22 9 4.8591 -6.7227 -2.6091 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.9075 -5.2272 1.1390 27 1 1.9057 -4.0556 2.0289 28 1 2.8525 -2.0727 2.9625 29 1 4.9171 -0.8850 3.6744 30 1 7.1007 -1.6401 2.7555 31 1 7.1554 -3.5413 1.1916 32 1 4.5323 -4.9689 -0.6527 33 1 3.1791 -6.1251 -0.6531 34 1 3.0380 -5.9606 -3.1228 35 1 4.3914 -4.8044 -3.1232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:23 Heat of formation + Delta-G solvation = -74.559089 kcal Electronic energy + Delta-G solvation = -20427.497780 eV Core-core repulsion = 17145.986238 eV Total energy + Delta-G solvation = -3281.511542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.59512 -41.31538 -40.34008 -36.87608 -34.90694 -33.35071 -32.90886 -32.44372 -29.57169 -27.47120 -25.80067 -24.27698 -23.74613 -23.08147 -20.06668 -18.73482 -18.32244 -17.74100 -17.41681 -17.23028 -16.80392 -16.46893 -16.35622 -16.01466 -15.58267 -15.35901 -14.72349 -14.44759 -14.26940 -13.92744 -13.89012 -13.45805 -13.38154 -13.02898 -12.83984 -12.69640 -12.49864 -12.21141 -12.10569 -11.74049 -11.70079 -10.74406 -10.67915 -10.63264 -10.37176 -9.86352 -9.49317 -8.20948 -6.31738 0.24748 0.47275 1.32511 1.36027 1.44216 1.74647 2.24557 2.40138 2.99827 3.10395 3.42626 3.60557 3.68758 3.87210 3.93434 4.09713 4.14601 4.25380 4.33664 4.45706 4.53823 4.68584 4.74297 4.85663 4.93815 5.02722 5.09282 5.25305 5.30595 5.39513 5.57143 5.81927 5.89958 6.08773 6.63162 6.76019 7.11419 7.27382 7.42792 8.86440 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.008333 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.676023 B = 3359.378563 C = 4573.406550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.594 5.594 11 C 0.158 3.842 12 C 0.099 3.901 13 C -0.149 4.149 14 C -0.089 4.089 15 C -0.171 4.171 16 C 0.080 3.920 17 N -0.495 5.495 18 C 0.509 3.491 19 O -0.593 6.593 20 C -0.166 4.166 21 C 0.083 3.917 22 F -0.220 7.220 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.032 0.968 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.180 0.820 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.279 -8.349 7.410 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.324 5.324 11 C 0.035 3.965 12 C -0.039 4.039 13 C -0.169 4.169 14 C -0.115 4.115 15 C -0.190 4.190 16 C -0.077 4.077 17 N -0.205 5.205 18 C 0.299 3.701 19 O -0.474 6.474 20 C -0.206 4.206 21 C 0.028 3.972 22 F -0.201 7.201 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.197 0.803 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.942 -8.727 6.316 15.355 hybrid contribution -0.045 2.007 0.413 2.050 sum 10.897 -6.720 6.730 14.463 Atomic orbital electron populations 1.70024 1.07218 1.27847 1.51512 1.25655 0.95587 1.02284 0.95004 0.85654 0.79057 0.79664 0.77932 1.21309 1.19953 1.18787 1.21464 0.92554 0.91530 1.50100 0.93755 1.18859 0.87637 0.83422 0.96225 1.48146 1.44230 1.34445 1.05532 1.20606 0.92183 0.97703 0.86012 1.21624 0.93665 0.95113 0.93502 1.22078 1.00221 0.96010 0.98600 1.21903 0.92454 0.98669 0.98475 1.22436 0.99542 0.98388 0.98682 1.23196 0.96909 0.92935 0.94639 1.67332 0.98757 1.30986 1.23414 1.20924 0.81582 0.84409 0.83204 1.90650 1.60166 1.64084 1.32537 1.22302 1.01134 0.97688 0.99456 1.21566 0.91959 0.86956 0.96722 1.92737 1.70224 1.59498 1.97677 0.92560 0.98052 0.95028 0.86761 0.87644 0.85239 0.83249 0.81986 0.80334 0.85640 0.85758 0.89809 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 2 C 0.01 0.76 5.46 84.65 0.46 1.23 16 3 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.52 -28.57 9.24 25.60 0.24 -28.33 16 8 H 0.04 2.51 7.81 -2.91 -0.02 2.48 16 9 C 0.26 13.35 5.20 85.63 0.45 13.80 16 10 N -0.59 -24.49 2.44 -830.48 -2.03 -26.51 16 11 C 0.16 4.90 5.57 85.63 0.48 5.38 16 12 C 0.10 3.16 6.36 42.55 0.27 3.43 16 13 C -0.15 -4.66 9.57 22.36 0.21 -4.44 16 14 C -0.09 -2.34 10.18 22.47 0.23 -2.12 16 15 C -0.17 -3.89 10.11 22.36 0.23 -3.67 16 16 C 0.08 1.99 11.18 84.67 0.95 2.94 16 17 N -0.49 -14.83 8.37 -183.88 -1.54 -16.37 16 18 C 0.51 21.11 7.67 87.66 0.67 21.78 16 19 O -0.59 -30.15 15.56 -3.04 -0.05 -30.20 16 20 C -0.17 -5.01 4.71 29.85 0.14 -4.87 16 21 C 0.08 2.44 6.84 71.98 0.49 2.93 16 22 F -0.22 -6.28 17.36 44.97 0.78 -5.50 16 23 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 25 H 0.03 1.62 7.89 -2.39 -0.02 1.60 16 26 H 0.11 2.80 6.44 -2.39 -0.02 2.79 16 27 H 0.11 2.95 7.79 -2.39 -0.02 2.93 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.13 3.79 6.10 -2.39 -0.01 3.78 16 33 H 0.12 2.99 7.40 -2.39 -0.02 2.97 16 34 H 0.08 2.38 8.10 -2.38 -0.02 2.36 16 35 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -70.96 307.57 5.38 -65.57 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.09 Total: 12.83 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.81 Total: 8.06 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -3.28 Total: -96.95 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.78 Total: -5.50 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.96 5.38 -65.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.988 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds