Wall clock time and date at job start Mon Mar 30 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47431 * 239.99890 * 3 2 1 5 5 H 1.48497 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47157 * 120.00160 * 3 2 1 7 7 C 1.37875 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.62468 * 56.89744 * 9 7 2 11 11 C 1.55135 * 110.85716 * 293.68448 * 9 7 2 12 12 C 1.54908 * 101.65442 * 205.89071 * 11 9 7 13 13 N 1.47853 * 104.79351 * 37.07302 * 12 11 9 14 14 C 1.46901 * 110.99923 * 213.63361 * 13 12 11 15 15 C 1.50699 * 109.47217 * 290.84504 * 14 13 12 16 16 C 1.38753 * 120.77185 * 269.72052 * 15 14 13 17 17 C 1.38098 * 119.22099 * 180.27385 * 16 15 14 18 18 N 1.31933 * 120.80229 * 359.97438 * 17 16 15 19 19 C 1.32034 * 121.68776 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.64721 * 180.02562 * 19 18 17 21 21 C 1.38505 * 120.77564 * 89.99972 * 15 14 13 22 22 C 1.47443 * 108.56424 * 335.90543 * 13 12 11 23 23 H 0.96993 * 120.00050 * 359.97438 * 1 2 3 24 24 H 0.96695 * 114.00329 * 303.10336 * 10 9 7 25 25 H 1.08994 * 110.99624 * 323.99044 * 11 9 7 26 26 H 1.09005 * 110.98673 * 87.76886 * 11 9 7 27 27 H 1.08999 * 110.37726 * 278.24422 * 12 11 9 28 28 H 1.08993 * 110.37107 * 155.89923 * 12 11 9 29 29 H 1.08997 * 109.46690 * 170.84300 * 14 13 12 30 30 H 1.09001 * 109.46968 * 50.84771 * 14 13 12 31 31 H 1.07993 * 120.38662 * 0.24959 * 16 15 14 32 32 H 1.08001 * 119.59834 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.42761 * 359.70243 * 21 15 14 34 34 H 1.08995 * 109.88917 * 120.39882 * 22 13 12 35 35 H 1.09007 * 109.88105 * 241.58237 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3664 -2.5696 -1.1206 11 6 0.4711 -2.6866 1.3273 12 6 0.3705 -4.2299 1.4159 13 7 1.6604 -4.7232 0.8880 14 6 1.4854 -5.9958 0.1753 15 6 1.1397 -7.0809 1.1623 16 6 2.1357 -7.8353 1.7657 17 6 1.7824 -8.8254 2.6612 18 7 0.5153 -9.0580 2.9460 19 6 -0.4594 -8.3609 2.3917 20 9 -1.7428 -8.6336 2.7137 21 6 -0.1799 -7.3522 1.4838 22 6 2.2285 -3.6933 -0.0012 23 1 -0.4850 0.8400 0.0004 24 1 -0.2684 -1.8417 -1.1668 25 1 1.0321 -2.2828 2.1701 26 1 -0.5183 -2.2332 1.2663 27 1 -0.4542 -4.5923 0.8022 28 1 0.2399 -4.5427 2.4518 29 1 2.4108 -6.2542 -0.3394 30 1 0.6803 -5.8968 -0.5527 31 1 3.1749 -7.6505 1.5375 32 1 2.5527 -9.4160 3.1347 33 1 -0.9805 -6.7844 1.0333 34 1 3.2018 -3.3762 0.3731 35 1 2.3286 -4.0901 -1.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118826125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:01 Heat of formation + Delta-G solvation = -50.821468 kcal Electronic energy + Delta-G solvation = -20088.063553 eV Core-core repulsion = 16807.581352 eV Total energy + Delta-G solvation = -3280.482201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.00096 -40.21446 -38.40716 -35.20894 -33.03060 -32.12994 -30.92945 -29.72235 -28.19194 -26.11725 -24.27208 -23.60285 -22.04877 -20.25365 -19.54868 -17.56054 -17.24921 -17.16246 -16.09482 -16.07929 -15.31803 -14.99033 -14.84289 -14.27662 -14.07255 -13.85918 -13.38471 -13.11376 -12.92947 -12.44664 -12.12678 -11.95716 -11.65425 -11.33718 -11.20387 -10.98788 -10.67239 -10.54319 -10.43506 -10.03446 -9.80395 -9.71394 -9.33037 -9.04473 -8.66936 -8.17705 -7.83121 -6.26854 -4.34266 0.89454 1.05048 3.21199 3.26381 3.29037 3.50076 3.56127 4.25668 4.36342 4.58702 4.70184 4.90122 4.98943 4.99798 5.36657 5.44962 5.60570 5.64631 5.72194 5.84107 5.97938 6.03510 6.19252 6.25689 6.33238 6.43168 6.57692 6.84182 6.96995 7.31568 7.40722 7.51487 7.57011 7.58693 7.76542 8.06485 8.66888 9.33629 9.44995 10.80575 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.004353 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.123589 B = 6431.273174 C = 6721.994921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.132 4.132 12 C 0.040 3.960 13 N -0.523 5.523 14 C 0.082 3.918 15 C 0.007 3.993 16 C -0.165 4.165 17 C 0.130 3.870 18 N -0.522 5.522 19 C 0.303 3.697 20 F -0.116 7.116 21 C -0.186 4.186 22 C 0.058 3.942 23 H 0.268 0.732 24 H 0.385 0.615 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -12.483 2.174 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.197 3.803 10 O -0.404 6.404 11 C -0.170 4.170 12 C -0.087 4.087 13 N -0.248 5.248 14 C -0.046 4.046 15 C -0.001 4.001 16 C -0.186 4.186 17 C -0.026 4.026 18 N -0.237 5.237 19 C 0.149 3.851 20 F -0.096 7.096 21 C -0.208 4.208 22 C -0.069 4.069 23 H 0.078 0.922 24 H 0.237 0.763 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.183 -13.647 3.047 14.152 hybrid contribution -0.571 2.171 -0.922 2.426 sum 1.612 -11.476 2.125 11.782 Atomic orbital electron populations 1.69569 1.06017 1.27691 1.50699 1.25005 0.94985 0.99526 0.93617 0.86500 0.79562 0.82241 0.78806 1.20069 1.21154 1.20058 1.21559 0.93588 0.90609 1.51474 0.91921 1.19692 0.86193 0.91740 0.82690 1.86057 1.51592 1.53412 1.49316 1.23182 1.02001 0.91084 1.00775 1.23130 0.89449 0.97825 0.98317 1.63750 1.24692 1.02024 1.34296 1.21296 1.01635 0.88955 0.92682 1.20238 0.91645 0.93902 0.94318 1.22097 1.01107 0.96882 0.98495 1.22465 0.90885 0.95096 0.94143 1.66967 1.01235 1.28886 1.26609 1.18095 0.79719 0.93219 0.94029 1.91608 1.33265 1.93118 1.91563 1.21818 0.98777 0.99392 1.00798 1.22880 0.98805 0.91208 0.94036 0.92152 0.76346 0.91721 0.90776 0.94320 0.92166 0.89553 0.92895 0.83770 0.81740 0.83722 0.89876 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.53 10.69 55.43 0.59 -22.93 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.88 8.22 -34.44 -0.28 -14.16 16 8 H 0.06 1.61 7.53 -52.49 -0.40 1.21 16 9 C 0.24 5.65 0.85 -89.95 -0.08 5.58 16 10 O -0.59 -14.91 13.08 -35.23 -0.46 -15.37 16 11 C -0.13 -2.95 5.67 -24.60 -0.14 -3.09 16 12 C 0.04 0.76 5.62 -2.29 -0.01 0.74 16 13 N -0.52 -9.35 5.15 -232.69 -1.20 -10.55 16 14 C 0.08 1.20 4.76 -4.98 -0.02 1.18 16 15 C 0.01 0.10 5.12 -104.33 -0.53 -0.44 16 16 C -0.17 -1.86 9.81 -39.44 -0.39 -2.25 16 17 C 0.13 1.44 11.18 -17.56 -0.20 1.25 16 18 N -0.52 -7.26 10.37 -13.60 -0.14 -7.40 16 19 C 0.30 4.31 8.41 -17.35 -0.15 4.16 16 20 F -0.12 -1.68 17.29 2.25 0.04 -1.64 16 21 C -0.19 -2.52 9.05 -39.37 -0.36 -2.88 16 22 C 0.06 1.17 6.21 -2.84 -0.02 1.16 16 23 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.38 9.96 6.98 45.56 0.32 10.28 16 25 H 0.06 1.50 8.05 -51.93 -0.42 1.08 16 26 H 0.07 1.76 7.76 -51.93 -0.40 1.36 16 27 H 0.04 0.72 7.09 -51.93 -0.37 0.35 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.11 7.99 -51.93 -0.41 0.70 16 30 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.87 7.57 -52.49 -0.40 1.47 16 34 H 0.08 1.68 7.63 -51.93 -0.40 1.29 16 35 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -27.54 296.10 -7.67 -35.21 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.67 Total: 10.04 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.27 Total: -7.01 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.75 Total: -40.89 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.46 Total: -15.37 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.54 -7.67 -35.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118826125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.616 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds