Wall clock time and date at job start Mon Mar 30 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47431 * 239.99890 * 3 2 1 5 5 H 1.48497 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47157 * 120.00160 * 3 2 1 7 7 C 1.37875 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.62468 * 56.89744 * 9 7 2 11 11 C 1.55135 * 110.85716 * 293.68448 * 9 7 2 12 12 C 1.54908 * 101.65442 * 205.89071 * 11 9 7 13 13 N 1.47853 * 104.79351 * 37.07302 * 12 11 9 14 14 C 1.46901 * 110.99923 * 213.63361 * 13 12 11 15 15 C 1.50699 * 109.47217 * 290.84504 * 14 13 12 16 16 C 1.38753 * 120.77185 * 269.72052 * 15 14 13 17 17 C 1.38098 * 119.22099 * 180.27385 * 16 15 14 18 18 N 1.31933 * 120.80229 * 359.97438 * 17 16 15 19 19 C 1.32034 * 121.68776 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.64721 * 180.02562 * 19 18 17 21 21 C 1.38505 * 120.77564 * 89.99972 * 15 14 13 22 22 C 1.47443 * 108.56424 * 335.90543 * 13 12 11 23 23 H 0.96993 * 120.00050 * 359.97438 * 1 2 3 24 24 H 0.96695 * 114.00329 * 303.10336 * 10 9 7 25 25 H 1.08994 * 110.99624 * 323.99044 * 11 9 7 26 26 H 1.09005 * 110.98673 * 87.76886 * 11 9 7 27 27 H 1.08999 * 110.37726 * 278.24422 * 12 11 9 28 28 H 1.08993 * 110.37107 * 155.89923 * 12 11 9 29 29 H 1.08997 * 109.46690 * 170.84300 * 14 13 12 30 30 H 1.09001 * 109.46968 * 50.84771 * 14 13 12 31 31 H 1.07993 * 120.38662 * 0.24959 * 16 15 14 32 32 H 1.08001 * 119.59834 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.42761 * 359.70243 * 21 15 14 34 34 H 1.08995 * 109.88917 * 120.39882 * 22 13 12 35 35 H 1.09007 * 109.88105 * 241.58237 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3664 -2.5696 -1.1206 11 6 0.4711 -2.6866 1.3273 12 6 0.3705 -4.2299 1.4159 13 7 1.6604 -4.7232 0.8880 14 6 1.4854 -5.9958 0.1753 15 6 1.1397 -7.0809 1.1623 16 6 2.1357 -7.8353 1.7657 17 6 1.7824 -8.8254 2.6612 18 7 0.5153 -9.0580 2.9460 19 6 -0.4594 -8.3609 2.3917 20 9 -1.7428 -8.6336 2.7137 21 6 -0.1799 -7.3522 1.4838 22 6 2.2285 -3.6933 -0.0012 23 1 -0.4850 0.8400 0.0004 24 1 -0.2684 -1.8417 -1.1668 25 1 1.0321 -2.2828 2.1701 26 1 -0.5183 -2.2332 1.2663 27 1 -0.4542 -4.5923 0.8022 28 1 0.2399 -4.5427 2.4518 29 1 2.4108 -6.2542 -0.3394 30 1 0.6803 -5.8968 -0.5527 31 1 3.1749 -7.6505 1.5375 32 1 2.5527 -9.4160 3.1347 33 1 -0.9805 -6.7844 1.0333 34 1 3.2018 -3.3762 0.3731 35 1 2.3286 -4.0901 -1.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118826125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:00 Heat of formation + Delta-G solvation = -70.390565 kcal Electronic energy + Delta-G solvation = -20088.912133 eV Core-core repulsion = 16807.581352 eV Total energy + Delta-G solvation = -3281.330781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.06396 -41.25155 -39.96978 -36.82843 -34.32851 -34.11220 -31.88955 -31.22959 -29.90605 -27.57882 -25.92901 -24.60468 -23.21926 -21.79125 -21.29406 -19.15617 -18.58554 -18.26474 -17.17342 -17.04079 -16.90568 -16.82630 -16.23080 -15.87583 -15.36161 -15.15615 -14.69118 -14.43522 -14.08022 -13.91448 -13.73474 -13.36576 -13.19589 -13.00994 -12.75789 -12.66857 -12.33944 -12.30998 -12.14350 -11.85734 -11.19273 -10.84707 -10.72827 -10.60356 -10.09748 -9.98955 -9.31106 -8.22243 -6.36861 -0.05937 0.05425 1.43097 1.43952 1.51379 2.38895 2.51889 2.59265 3.02584 3.16439 3.46084 3.65862 3.87648 3.93408 4.04275 4.18965 4.30906 4.37752 4.49054 4.57407 4.62015 4.72163 4.77057 4.81761 4.84636 5.12204 5.22209 5.30445 5.47410 5.53708 5.63363 5.80648 5.89681 6.13797 6.16655 6.63113 6.68025 7.34134 7.43102 8.83082 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.004353 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.123589 B = 6431.273174 C = 6721.994921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.060 0.940 9 C 0.220 3.780 10 O -0.599 6.599 11 C -0.127 4.127 12 C 0.054 3.946 13 N -0.519 5.519 14 C 0.084 3.916 15 C -0.004 4.004 16 C -0.153 4.153 17 C 0.135 3.865 18 N -0.541 5.541 19 C 0.284 3.716 20 F -0.125 7.125 21 C -0.191 4.191 22 C 0.066 3.934 23 H 0.269 0.731 24 H 0.377 0.623 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.044 0.956 31 H 0.173 0.827 32 H 0.204 0.796 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -13.445 2.477 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.078 0.922 9 C 0.180 3.820 10 O -0.409 6.409 11 C -0.166 4.166 12 C -0.074 4.074 13 N -0.242 5.242 14 C -0.043 4.043 15 C -0.012 4.012 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.256 5.256 19 C 0.131 3.869 20 F -0.104 7.104 21 C -0.213 4.213 22 C -0.062 4.062 23 H 0.078 0.922 24 H 0.228 0.772 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.191 0.809 32 H 0.221 0.779 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.846 -14.628 3.350 15.491 hybrid contribution -1.058 2.429 -1.014 2.837 sum 2.789 -12.198 2.336 12.729 Atomic orbital electron populations 1.69662 1.06948 1.28251 1.50875 1.25694 0.95764 1.02349 0.93323 0.85590 0.78413 0.78729 0.78766 1.19815 1.20903 1.19688 1.21895 0.93761 0.92040 1.51912 0.92187 1.19964 0.86679 0.92651 0.82704 1.86051 1.51645 1.53002 1.50177 1.23000 1.00275 0.93644 0.99690 1.22971 0.90167 0.95080 0.99174 1.63735 1.23801 1.02543 1.34168 1.21341 1.02590 0.87598 0.92777 1.20167 0.91986 0.94254 0.94827 1.22423 1.01978 0.95720 0.97191 1.23140 0.90556 0.94920 0.93505 1.67026 1.02268 1.29248 1.27081 1.18222 0.79717 0.94023 0.94919 1.91578 1.33884 1.93252 1.91724 1.21825 0.99199 0.99402 1.00833 1.22732 0.97986 0.90641 0.94810 0.92158 0.77190 0.93085 0.92969 0.94229 0.91006 0.87222 0.93787 0.80939 0.77913 0.83922 0.89774 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.51 10.69 21.45 0.23 -48.28 16 2 C 0.03 1.48 5.28 84.65 0.45 1.93 16 3 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.56 -29.08 8.22 25.60 0.21 -28.87 16 8 H 0.06 3.07 7.53 -2.91 -0.02 3.05 16 9 C 0.22 10.51 0.85 -10.36 -0.01 10.51 16 10 O -0.60 -30.42 13.08 -148.98 -1.95 -32.37 16 11 C -0.13 -5.76 5.67 31.98 0.18 -5.58 16 12 C 0.05 1.98 5.62 86.77 0.49 2.47 16 13 N -0.52 -17.60 5.15 -890.08 -4.59 -22.19 16 14 C 0.08 2.27 4.76 85.56 0.41 2.68 16 15 C 0.00 -0.10 5.12 -19.68 -0.10 -0.20 16 16 C -0.15 -2.88 9.81 22.36 0.22 -2.66 16 17 C 0.13 2.52 11.18 84.64 0.95 3.46 16 18 N -0.54 -13.98 10.37 -196.93 -2.04 -16.02 16 19 C 0.28 7.81 8.41 84.74 0.71 8.53 16 20 F -0.13 -3.61 17.29 44.97 0.78 -2.83 16 21 C -0.19 -4.96 9.05 22.41 0.20 -4.76 16 22 C 0.07 2.60 6.21 86.65 0.54 3.14 16 23 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 24 H 0.38 20.00 6.98 -74.06 -0.52 19.49 16 25 H 0.05 2.40 8.05 -2.39 -0.02 2.38 16 26 H 0.05 2.55 7.76 -2.38 -0.02 2.53 16 27 H 0.04 1.45 7.09 -2.39 -0.02 1.44 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.11 2.45 7.99 -2.39 -0.02 2.44 16 30 H 0.04 1.28 7.81 -2.39 -0.02 1.27 16 31 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.14 3.65 7.57 -2.91 -0.02 3.63 16 34 H 0.08 3.30 7.63 -2.39 -0.02 3.28 16 35 H 0.05 2.07 7.48 -2.38 -0.02 2.05 16 Total: -1.00 -58.71 296.10 -0.71 -59.41 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.59 Total: 28.26 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.24 Total: -9.34 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -6.40 Total: -86.50 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.95 Total: -32.37 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -58.71 -0.71 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118826125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.977 kcal (2) G-P(sol) polarization free energy of solvation -58.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds