Wall clock time and date at job start Mon Mar 30 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47368 * 270.00087 * 3 2 1 5 5 H 1.48505 * 109.47301 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.47156 * 150.00173 * 3 2 1 7 7 C 1.37875 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00331 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.47207 * 184.73881 * 9 7 2 11 11 C 1.46894 * 111.00155 * 176.74713 * 10 9 7 12 12 C 1.52996 * 109.47291 * 196.72377 * 11 10 9 13 13 H 1.09001 * 109.87065 * 52.10708 * 12 11 10 14 14 C 1.54102 * 109.88073 * 173.11561 * 12 11 10 15 15 C 1.54808 * 104.18701 * 121.45178 * 14 12 11 16 16 C 1.54997 * 102.09348 * 20.88092 * 15 14 12 17 17 O 1.43745 * 109.87691 * 290.94613 * 12 11 10 18 18 C 1.46895 * 110.99635 * 300.70379 * 10 9 7 19 Xx 1.59697 * 109.47367 * 304.02905 * 18 10 9 20 19 F 1.36994 * 109.47175 * 65.76747 * 19 18 10 21 20 F 1.36996 * 109.47475 * 185.77155 * 19 18 10 22 21 F 1.37010 * 109.47104 * 305.77239 * 19 18 10 23 22 H 0.96996 * 120.00457 * 359.97438 * 1 2 3 24 23 H 1.08998 * 109.47160 * 64.74542 * 9 7 2 25 24 H 1.08996 * 109.47341 * 304.73884 * 9 7 2 26 25 H 1.08996 * 109.47255 * 76.71948 * 11 10 9 27 26 H 1.09003 * 109.47311 * 316.72411 * 11 10 9 28 27 H 1.08998 * 110.48454 * 240.13050 * 14 12 11 29 28 H 1.08996 * 110.48583 * 2.64328 * 14 12 11 30 29 H 1.09005 * 110.90595 * 139.07917 * 15 14 12 31 30 H 1.09002 * 110.91031 * 262.67961 * 15 14 12 32 31 H 1.09001 * 110.61498 * 81.47600 * 16 15 14 33 32 H 1.08996 * 110.61592 * 204.31589 * 16 15 14 34 33 H 1.09000 * 109.47827 * 64.03188 * 18 10 9 35 34 H 1.09003 * 109.46732 * 184.03364 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2016 -3.6134 0.1133 11 6 1.4974 -4.9000 0.1941 12 6 2.4531 -5.9722 0.7213 13 1 2.9178 -5.6318 1.6466 14 6 1.6826 -7.2828 0.9732 15 6 2.3976 -8.3218 0.0756 16 6 3.7790 -7.6574 -0.1532 17 8 3.4633 -6.2528 -0.2621 18 6 3.1577 -3.6056 -1.0020 19 9 1.6481 -2.4802 -2.5317 20 9 3.2504 -3.7632 -3.4211 21 9 1.5031 -4.7083 -2.3921 22 1 -0.4850 0.8400 0.0004 23 1 0.6893 -2.5944 -0.9298 24 1 0.5626 -2.5212 0.8442 25 1 1.1442 -5.1838 -0.7972 26 1 0.6472 -4.8071 0.8699 27 1 1.7535 -7.5714 2.0219 28 1 0.6390 -7.1745 0.6780 29 1 2.5053 -9.2748 0.5937 30 1 1.8672 -8.4514 -0.8678 31 1 4.4373 -7.8380 0.6966 32 1 4.2333 -8.0236 -1.0738 33 1 3.7642 -2.7012 -0.9544 34 1 3.8040 -4.4806 -0.9325 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380926044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:40 Heat of formation + Delta-G solvation = 66.808774 kcal Electronic energy + Delta-G solvation = -20370.635702 eV Core-core repulsion = 16707.365373 eV Total energy + Delta-G solvation = -3663.270328 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.119 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -37.91975 -35.83394 -35.01292 -34.92021 -33.98353 -31.64898 -30.66801 -28.67050 -25.80821 -24.03394 -22.40487 -20.62646 -19.41462 -18.31493 -15.32428 -15.00806 -14.13334 -13.92482 -13.67297 -12.63413 -12.37706 -12.17164 -11.70309 -10.98782 -10.38485 -10.26777 -10.17362 -10.04595 -9.81423 -9.75094 -9.47921 -9.31955 -8.94129 -8.72728 -8.21131 -7.89743 -7.64973 -7.08304 -5.97110 -5.71422 -5.45214 -5.26123 -5.19079 -4.80078 -4.42450 -4.07358 -3.78186 -2.75622 -0.64340 3.89214 4.12292 4.25101 4.30215 5.31866 5.44765 5.97575 6.11325 6.21525 6.28180 6.45302 6.57526 6.80053 6.96040 7.00563 7.10738 7.30927 7.33135 7.50469 7.63220 7.87179 8.13086 8.47013 8.58613 8.69166 8.98654 9.12353 9.25295 9.46909 9.60347 10.02864 10.35442 11.89588 Molecular weight = 255.12amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.006648 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.472086 B = 4210.673446 C = 4613.354123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.026 3.974 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.382 4.382 8 H 0.068 0.932 9 C 0.149 3.851 10 N -0.493 5.493 11 C -0.037 4.037 12 C 0.084 3.916 13 H 0.054 0.946 14 C -0.143 4.143 15 C -0.151 4.151 16 C 0.044 3.956 17 O -0.349 6.349 18 C 0.473 3.527 19 F -0.490 7.490 20 F -0.629 7.629 21 F -0.691 7.691 22 H 0.264 0.736 23 H 0.105 0.895 24 H 0.040 0.960 25 H 0.165 0.835 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -9.679 15.303 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.176 4.176 3 Si 0.741 3.259 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.416 4.416 8 H 0.086 0.914 9 C 0.028 3.972 10 N -0.204 5.204 11 C -0.161 4.161 12 C 0.026 3.974 13 H 0.072 0.928 14 C -0.182 4.182 15 C -0.188 4.188 16 C -0.033 4.033 17 O -0.268 6.268 18 C 0.319 3.681 19 F -0.487 7.487 20 F -0.626 7.626 21 F -0.684 7.684 22 H 0.074 0.926 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.180 0.820 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.058 -9.390 15.672 18.957 hybrid contribution -0.188 0.655 -0.681 0.964 sum 4.869 -8.735 14.991 18.021 Atomic orbital electron populations 1.70031 1.06429 1.27063 1.45224 1.25140 0.95199 0.99957 0.97311 0.86214 0.79267 0.81915 0.78530 1.20016 1.21446 1.19645 1.21924 0.93969 0.91217 1.34524 0.91440 1.21002 0.91525 0.85234 0.99454 1.62190 1.22297 1.06587 1.29331 1.24478 0.93983 0.86840 1.10849 1.22782 0.88984 0.94862 0.90726 0.92813 1.22867 1.01434 0.95054 0.98810 1.23076 0.97317 0.97682 1.00765 1.23419 0.95607 0.83848 1.00442 1.89117 1.57173 1.22828 1.57667 1.30751 0.85004 0.98431 0.53936 1.99777 1.71605 1.92368 1.84966 1.99893 1.82324 1.95861 1.84516 1.99515 1.88902 1.96052 1.83973 0.92624 0.87976 0.94233 0.81979 0.92323 0.91834 0.90322 0.91593 0.90247 0.93658 0.89769 0.89405 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -36.08 13.29 55.43 0.74 -35.34 16 2 C 0.03 1.08 5.46 -17.82 -0.10 0.99 16 3 Si 0.91 32.40 29.54 -169.99 -5.02 27.38 16 4 H -0.27 -9.96 7.11 56.52 0.40 -9.56 16 5 H -0.29 -9.56 7.11 56.52 0.40 -9.16 16 6 H -0.27 -9.21 7.11 56.52 0.40 -8.81 16 7 C -0.38 -16.96 7.87 -34.44 -0.27 -17.23 16 8 H 0.07 2.91 6.46 -52.49 -0.34 2.57 16 9 C 0.15 6.78 4.23 -4.97 -0.02 6.76 16 10 N -0.49 -20.90 4.74 -170.51 -0.81 -21.71 16 11 C -0.04 -1.46 4.44 -3.83 -0.02 -1.47 16 12 C 0.08 2.80 3.59 -26.16 -0.09 2.71 16 13 H 0.05 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.14 -3.97 6.64 -25.20 -0.17 -4.14 16 15 C -0.15 -3.95 7.15 -24.72 -0.18 -4.13 16 16 C 0.04 1.24 7.72 38.21 0.29 1.53 16 17 O -0.35 -12.38 8.24 -35.23 -0.29 -12.67 16 18 C 0.47 21.95 6.17 60.06 0.37 22.32 16 19 F -0.49 -29.41 14.43 2.25 0.03 -29.38 16 20 F -0.63 -38.50 18.50 2.25 0.04 -38.46 16 21 F -0.69 -40.60 14.93 2.25 0.03 -40.57 16 22 H 0.26 10.42 8.31 -40.82 -0.34 10.08 16 23 H 0.10 5.48 5.60 -51.93 -0.29 5.19 16 24 H 0.04 1.74 8.01 -51.93 -0.42 1.32 16 25 H 0.17 7.61 4.44 -51.93 -0.23 7.38 16 26 H 0.06 2.13 7.90 -51.93 -0.41 1.72 16 27 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 2.22 7.70 -51.93 -0.40 1.82 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.08 2.21 8.14 -51.93 -0.42 1.79 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 2.30 8.14 -51.93 -0.42 1.88 16 33 H 0.09 3.92 6.48 -51.93 -0.34 3.59 16 34 H 0.10 4.18 5.08 -51.93 -0.26 3.92 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -2.00 -115.85 287.09 -5.49 -121.33 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.36 Total: 17.77 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.18 Total: 7.32 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.07 Total: -57.05 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.29 Total: -12.67 kcal Atomic # 9 Polarization: -108.52 SS G_CDS: 0.11 Total: -108.41 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: -5.02 Total: 27.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -115.85 -5.49 -121.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380926044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.141 kcal (2) G-P(sol) polarization free energy of solvation -115.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -121.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds