Wall clock time and date at job start Mon Mar 30 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47368 * 270.00087 * 3 2 1 5 5 H 1.48505 * 109.47301 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.47156 * 150.00173 * 3 2 1 7 7 C 1.37875 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00331 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.47207 * 184.73881 * 9 7 2 11 11 C 1.46894 * 111.00155 * 176.74713 * 10 9 7 12 12 C 1.52996 * 109.47291 * 196.72377 * 11 10 9 13 13 H 1.09001 * 109.87065 * 52.10708 * 12 11 10 14 14 C 1.54102 * 109.88073 * 173.11561 * 12 11 10 15 15 C 1.54808 * 104.18701 * 121.45178 * 14 12 11 16 16 C 1.54997 * 102.09348 * 20.88092 * 15 14 12 17 17 O 1.43745 * 109.87691 * 290.94613 * 12 11 10 18 18 C 1.46895 * 110.99635 * 300.70379 * 10 9 7 19 Xx 1.59697 * 109.47367 * 304.02905 * 18 10 9 20 19 F 1.36994 * 109.47175 * 65.76747 * 19 18 10 21 20 F 1.36996 * 109.47475 * 185.77155 * 19 18 10 22 21 F 1.37010 * 109.47104 * 305.77239 * 19 18 10 23 22 H 0.96996 * 120.00457 * 359.97438 * 1 2 3 24 23 H 1.08998 * 109.47160 * 64.74542 * 9 7 2 25 24 H 1.08996 * 109.47341 * 304.73884 * 9 7 2 26 25 H 1.08996 * 109.47255 * 76.71948 * 11 10 9 27 26 H 1.09003 * 109.47311 * 316.72411 * 11 10 9 28 27 H 1.08998 * 110.48454 * 240.13050 * 14 12 11 29 28 H 1.08996 * 110.48583 * 2.64328 * 14 12 11 30 29 H 1.09005 * 110.90595 * 139.07917 * 15 14 12 31 30 H 1.09002 * 110.91031 * 262.67961 * 15 14 12 32 31 H 1.09001 * 110.61498 * 81.47600 * 16 15 14 33 32 H 1.08996 * 110.61592 * 204.31589 * 16 15 14 34 33 H 1.09000 * 109.47827 * 64.03188 * 18 10 9 35 34 H 1.09003 * 109.46732 * 184.03364 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2016 -3.6134 0.1133 11 6 1.4974 -4.9000 0.1941 12 6 2.4531 -5.9722 0.7213 13 1 2.9178 -5.6318 1.6466 14 6 1.6826 -7.2828 0.9732 15 6 2.3976 -8.3218 0.0756 16 6 3.7790 -7.6574 -0.1532 17 8 3.4633 -6.2528 -0.2621 18 6 3.1577 -3.6056 -1.0020 19 9 1.6481 -2.4802 -2.5317 20 9 3.2504 -3.7632 -3.4211 21 9 1.5031 -4.7083 -2.3921 22 1 -0.4850 0.8400 0.0004 23 1 0.6893 -2.5944 -0.9298 24 1 0.5626 -2.5212 0.8442 25 1 1.1442 -5.1838 -0.7972 26 1 0.6472 -4.8071 0.8699 27 1 1.7535 -7.5714 2.0219 28 1 0.6390 -7.1745 0.6780 29 1 2.5053 -9.2748 0.5937 30 1 1.8672 -8.4514 -0.8678 31 1 4.4373 -7.8380 0.6966 32 1 4.2333 -8.0236 -1.0738 33 1 3.7642 -2.7012 -0.9544 34 1 3.8040 -4.4806 -0.9325 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380926044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:39 Heat of formation + Delta-G solvation = -49.009686 kcal Electronic energy + Delta-G solvation = -20375.657967 eV Core-core repulsion = 16707.365373 eV Total energy + Delta-G solvation = -3668.292594 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45747 -38.73868 -37.97137 -37.80721 -37.40066 -35.95589 -33.04541 -31.71324 -29.73499 -27.30526 -25.96507 -23.19344 -22.21859 -21.41220 -19.65522 -17.59268 -17.37994 -16.79248 -16.36879 -16.01863 -15.61061 -14.97246 -14.37157 -14.18851 -13.85258 -13.60383 -13.18628 -12.96138 -12.76192 -12.52151 -12.33699 -11.97595 -11.83090 -11.66071 -11.44162 -11.37371 -10.75474 -10.39029 -9.53534 -8.92968 -8.53612 -8.45808 -8.39628 -7.89864 -7.69821 -7.46753 -7.17473 -7.06571 -4.33803 0.75238 1.20061 1.35419 1.49476 1.95330 2.29176 2.92827 3.10663 3.75402 3.96825 4.05605 4.07626 4.16630 4.27863 4.41279 4.43807 4.56897 4.61813 4.72079 4.80174 4.87960 4.93265 5.05295 5.15672 5.21763 5.36678 5.44873 5.68364 5.80531 5.96594 6.03738 6.40039 7.47081 Molecular weight = 255.12amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.006648 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.472086 B = 4210.673446 C = 4613.354123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.674 5.674 2 C -0.103 4.103 3 Si 1.033 2.967 4 H -0.287 1.287 5 H -0.205 1.205 6 H -0.221 1.221 7 C -0.108 4.108 8 H 0.122 0.878 9 C 0.076 3.924 10 N -0.470 5.470 11 C -0.044 4.044 12 C 0.085 3.915 13 H 0.094 0.906 14 C -0.134 4.134 15 C -0.144 4.144 16 C 0.031 3.969 17 O -0.414 6.414 18 C 0.480 3.520 19 F -0.809 7.809 20 F -0.890 7.890 21 F -0.815 7.815 22 H 0.332 0.668 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -0.302 27.864 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.309 4.309 3 Si 0.845 3.155 4 H -0.213 1.213 5 H -0.126 1.126 6 H -0.143 1.143 7 C -0.128 4.128 8 H 0.140 0.860 9 C -0.048 4.048 10 N -0.183 5.183 11 C -0.170 4.170 12 C 0.028 3.972 13 H 0.112 0.888 14 C -0.172 4.172 15 C -0.182 4.182 16 C -0.044 4.044 17 O -0.335 6.335 18 C 0.328 3.672 19 F -0.805 7.805 20 F -0.886 7.886 21 F -0.811 7.811 22 H 0.145 0.855 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.344 -0.104 28.242 28.439 hybrid contribution -0.799 0.100 -2.274 2.412 sum 2.544 -0.004 25.968 26.092 Atomic orbital electron populations 1.69962 1.09666 1.35575 1.16988 1.27932 0.97484 1.07307 0.98183 0.84567 0.80005 0.71208 0.79767 1.21275 1.12642 1.14290 1.25033 0.98899 0.93541 0.95370 0.86037 1.21743 0.94540 0.87618 1.00865 1.62693 1.20460 1.06976 1.28140 1.24160 0.97074 0.87790 1.07940 1.22886 0.88404 0.95369 0.90554 0.88822 1.22916 0.99540 0.92290 1.02480 1.23089 0.95261 1.00197 0.99637 1.23831 0.97747 0.80633 1.02217 1.89061 1.57951 1.27095 1.59393 1.29900 0.85648 0.98392 0.53229 1.99753 1.92817 1.95821 1.92113 1.99900 1.99792 1.99906 1.89050 1.99571 1.94642 1.97368 1.89484 0.85531 0.90772 0.87932 0.89079 0.89167 0.85398 0.92113 0.85113 0.94335 0.88138 0.91094 0.90759 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -46.40 13.29 21.45 0.28 -46.11 16 2 C -0.10 -7.11 5.46 84.65 0.46 -6.65 16 3 Si 1.03 53.40 29.54 68.60 2.03 55.43 16 4 H -0.29 -16.46 7.11 99.48 0.71 -15.75 16 5 H -0.21 -8.61 7.11 99.48 0.71 -7.91 16 6 H -0.22 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.11 -8.53 7.87 25.60 0.20 -8.33 16 8 H 0.12 9.08 6.46 -2.91 -0.02 9.06 16 9 C 0.08 6.66 4.23 85.55 0.36 7.02 16 10 N -0.47 -40.67 4.74 -693.37 -3.29 -43.96 16 11 C -0.04 -3.69 4.44 86.30 0.38 -3.30 16 12 C 0.09 5.75 3.59 30.97 0.11 5.87 16 13 H 0.09 5.50 8.14 -2.39 -0.02 5.48 16 14 C -0.13 -7.30 6.64 31.58 0.21 -7.09 16 15 C -0.14 -7.68 7.15 31.89 0.23 -7.45 16 16 C 0.03 1.83 7.72 72.67 0.56 2.39 16 17 O -0.41 -31.73 8.24 -148.98 -1.23 -32.96 16 18 C 0.48 49.15 6.17 127.69 0.79 49.93 16 19 F -0.81 -111.75 14.43 44.97 0.65 -111.11 16 20 F -0.89 -131.84 18.50 44.97 0.83 -131.01 16 21 F -0.82 -113.06 14.93 44.97 0.67 -112.38 16 22 H 0.33 19.40 8.31 -92.71 -0.77 18.63 16 23 H 0.08 8.34 5.60 -2.39 -0.01 8.32 16 24 H 0.10 8.00 8.01 -2.39 -0.02 7.98 16 25 H 0.09 9.65 4.44 -2.39 -0.01 9.64 16 26 H 0.09 6.58 7.90 -2.39 -0.02 6.56 16 27 H 0.13 5.32 8.14 -2.39 -0.02 5.30 16 28 H 0.06 3.48 7.70 -2.39 -0.02 3.46 16 29 H 0.13 5.23 8.14 -2.38 -0.02 5.21 16 30 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 4.74 8.14 -2.39 -0.02 4.72 16 32 H 0.07 4.24 8.14 -2.39 -0.02 4.22 16 33 H 0.07 7.13 6.48 -2.39 -0.02 7.12 16 34 H 0.10 10.01 5.08 -2.39 -0.01 10.00 16 Total: -2.00 -319.41 287.09 4.36 -315.05 By element: Atomic # 1 Polarization: 73.56 SS G_CDS: 1.11 Total: 74.66 kcal Atomic # 6 Polarization: 29.07 SS G_CDS: 3.31 Total: 32.38 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -3.00 Total: -90.07 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.23 Total: -32.96 kcal Atomic # 9 Polarization: -356.65 SS G_CDS: 2.15 Total: -354.50 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.03 Total: 55.43 kcal Total: -319.41 4.36 -315.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380926044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 266.045 kcal (2) G-P(sol) polarization free energy of solvation -319.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -315.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds