Wall clock time and date at job start Mon Mar 30 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99711 * 3 2 1 5 5 H 1.48500 * 109.47191 * 29.99624 * 3 2 1 6 6 H 1.48501 * 109.47289 * 150.00241 * 3 2 1 7 7 C 1.37877 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 C 1.52997 * 109.47266 * 180.02562 * 19 17 10 21 21 C 1.53010 * 109.46938 * 179.97438 * 20 19 17 22 22 N 1.46895 * 109.46673 * 179.97438 * 21 20 19 23 23 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 25 25 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 26 26 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 27 27 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 28 28 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 29 29 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.46469 * 300.00239 * 19 17 10 32 32 H 1.09002 * 109.46873 * 59.99721 * 19 17 10 33 33 H 1.09006 * 109.46912 * 299.99482 * 20 19 17 34 34 H 1.09002 * 109.47551 * 59.99954 * 20 19 17 35 35 H 1.08994 * 109.46637 * 299.99814 * 21 20 19 36 36 H 1.09002 * 109.46984 * 59.99673 * 21 20 19 37 37 H 1.00906 * 110.99745 * 180.02562 * 22 21 20 38 38 H 1.00898 * 111.00453 * 303.94582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.2446 -3.2666 -1.2660 12 6 2.9889 -3.9773 -1.7011 13 6 2.0187 -3.4577 -2.4745 14 6 1.0373 -4.4633 -2.6311 15 6 1.4667 -5.5373 -1.9447 16 8 2.6516 -5.2388 -1.3872 17 6 4.2241 -3.2098 1.1698 18 8 4.0219 -2.6373 2.2198 19 6 4.7259 -4.6308 1.1710 20 6 4.8948 -5.1109 2.6139 21 6 5.4038 -6.5538 2.6150 22 7 5.5665 -7.0145 4.0003 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 4.5330 -2.5404 -2.0260 27 1 5.0464 -3.9932 -1.1349 28 1 1.9945 -2.4636 -2.8957 29 1 0.1189 -4.3842 -3.1941 30 1 0.9485 -6.4811 -1.8594 31 1 4.0078 -5.2701 0.6574 32 1 5.6862 -4.6774 0.6574 33 1 5.6128 -4.4716 3.1278 34 1 3.9343 -5.0644 3.1271 35 1 4.6855 -7.1927 2.1012 36 1 6.3642 -6.6007 2.1016 37 1 5.9024 -7.9656 4.0280 38 1 6.1785 -6.4002 4.5162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037824438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:21 Heat of formation + Delta-G solvation = -21.791019 kcal Electronic energy + Delta-G solvation = -20684.772116 eV Core-core repulsion = 17529.009075 eV Total energy + Delta-G solvation = -3155.763042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04125 -39.18860 -35.84927 -35.15255 -32.66431 -32.44875 -31.55470 -30.09941 -28.19455 -25.76693 -25.05181 -22.39803 -21.23177 -21.02185 -20.24673 -18.47675 -17.26295 -16.78414 -16.39133 -15.91728 -15.65268 -15.24241 -15.15516 -14.65106 -14.17332 -13.85682 -13.46549 -12.94726 -12.71866 -12.34514 -12.29128 -12.21332 -12.04300 -11.76781 -11.56139 -11.34352 -11.15552 -10.96706 -10.62923 -10.54406 -10.12889 -9.58070 -9.28308 -9.02179 -8.79413 -8.55612 -8.08559 -7.75552 -6.03442 -4.01310 2.16133 3.11432 3.27192 3.29132 3.36857 3.40089 3.53592 3.86964 4.42368 4.49872 4.92345 5.09356 5.10532 5.21312 5.28317 5.29323 5.49264 5.55364 5.58930 5.65611 5.73563 5.79088 5.87766 6.31043 6.32922 6.49128 6.51610 6.56572 6.63641 6.96123 7.03111 7.03761 7.27725 7.31555 7.62259 7.63760 8.16702 8.51734 8.93687 9.04885 9.56365 11.09778 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.007077 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.968330 B = 3955.383865 C = 5223.552752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.213 3.787 10 N -0.593 5.593 11 C 0.198 3.802 12 C -0.037 4.037 13 C -0.161 4.161 14 C -0.209 4.209 15 C -0.054 4.054 16 O -0.181 6.181 17 C 0.512 3.488 18 O -0.533 6.533 19 C -0.141 4.141 20 C -0.102 4.102 21 C 0.062 3.938 22 N -0.852 5.852 23 H 0.263 0.737 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.195 0.805 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.338 0.662 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -12.467 -4.005 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.093 3.907 10 N -0.325 5.325 11 C 0.074 3.926 12 C -0.087 4.087 13 C -0.181 4.181 14 C -0.228 4.228 15 C -0.121 4.121 16 O -0.078 6.078 17 C 0.299 3.701 18 O -0.410 6.410 19 C -0.182 4.182 20 C -0.140 4.140 21 C -0.069 4.069 22 N -0.381 5.381 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.212 0.788 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.159 -12.068 -3.190 16.094 hybrid contribution 0.770 0.927 -0.549 1.324 sum 10.929 -11.141 -3.738 16.048 Atomic orbital electron populations 1.69898 1.06140 1.26727 1.50745 1.24838 0.94695 0.98671 0.94740 0.86944 0.80692 0.84277 0.78387 1.20223 1.21061 1.18932 1.21316 0.88952 0.94887 1.50673 0.90437 1.19738 0.96136 0.77443 0.97369 1.48058 1.64950 1.15519 1.03964 1.19794 0.90135 0.94906 0.87795 1.22849 1.00958 0.83176 1.01749 1.21573 0.93862 1.00315 1.02390 1.21804 1.01672 0.94062 1.05255 1.23822 0.86895 1.01056 1.00359 1.83924 1.33969 1.29478 1.60406 1.20429 0.77966 0.87949 0.83746 1.90675 1.51778 1.67711 1.30832 1.21696 1.02414 0.94988 0.99077 1.21287 1.03306 0.94069 0.95347 1.21825 0.99028 0.96852 0.89171 1.58666 1.58340 1.06866 1.14254 0.92728 0.93980 0.95733 0.87629 0.89839 0.83398 0.84041 0.78830 0.88732 0.89789 0.91604 0.90321 0.90999 0.95789 0.84981 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.71 9.69 -34.44 -0.33 -15.04 16 8 H 0.08 2.46 7.90 -52.49 -0.41 2.05 16 9 C 0.21 5.12 4.27 -5.20 -0.02 5.10 16 10 N -0.59 -12.00 2.44 -176.43 -0.43 -12.43 16 11 C 0.20 3.08 5.78 -5.19 -0.03 3.05 16 12 C -0.04 -0.64 6.85 -35.62 -0.24 -0.88 16 13 C -0.16 -2.98 10.40 -39.70 -0.41 -3.39 16 14 C -0.21 -3.48 10.91 -39.71 -0.43 -3.91 16 15 C -0.05 -0.81 12.09 29.41 0.36 -0.45 16 16 O -0.18 -3.00 9.55 5.68 0.05 -2.94 16 17 C 0.51 10.46 7.67 -10.99 -0.08 10.38 16 18 O -0.53 -13.26 15.56 5.55 0.09 -13.18 16 19 C -0.14 -2.10 4.25 -27.88 -0.12 -2.22 16 20 C -0.10 -1.46 4.76 -26.73 -0.13 -1.59 16 21 C 0.06 0.69 6.79 -3.82 -0.03 0.66 16 22 N -0.85 -8.89 9.62 -10.37 -0.10 -8.99 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.04 1.10 6.48 -51.93 -0.34 0.76 16 25 H 0.02 0.54 7.32 -51.93 -0.38 0.16 16 26 H 0.11 1.43 7.89 -51.93 -0.41 1.02 16 27 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 28 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 29 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.09 1.41 6.93 -51.93 -0.36 1.05 16 32 H 0.08 0.99 7.40 -51.93 -0.38 0.60 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.34 2.73 9.08 -39.29 -0.36 2.38 16 38 H 0.34 3.21 8.99 -39.29 -0.35 2.86 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -35.21 321.70 -6.46 -41.67 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.45 Total: 7.45 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.57 Total: -6.30 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.24 Total: -48.30 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.14 Total: -16.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.21 -6.46 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.878 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds