Wall clock time and date at job start Mon Mar 30 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99711 * 3 2 1 5 5 H 1.48500 * 109.47191 * 29.99624 * 3 2 1 6 6 H 1.48501 * 109.47289 * 150.00241 * 3 2 1 7 7 C 1.37877 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 C 1.52997 * 109.47266 * 180.02562 * 19 17 10 21 21 C 1.53010 * 109.46938 * 179.97438 * 20 19 17 22 22 N 1.46895 * 109.46673 * 179.97438 * 21 20 19 23 23 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 25 25 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 26 26 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 27 27 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 28 28 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 29 29 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.46469 * 300.00239 * 19 17 10 32 32 H 1.09002 * 109.46873 * 59.99721 * 19 17 10 33 33 H 1.09006 * 109.46912 * 299.99482 * 20 19 17 34 34 H 1.09002 * 109.47551 * 59.99954 * 20 19 17 35 35 H 1.08994 * 109.46637 * 299.99814 * 21 20 19 36 36 H 1.09002 * 109.46984 * 59.99673 * 21 20 19 37 37 H 1.00906 * 110.99745 * 180.02562 * 22 21 20 38 38 H 1.00898 * 111.00453 * 303.94582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.2446 -3.2666 -1.2660 12 6 2.9889 -3.9773 -1.7011 13 6 2.0187 -3.4577 -2.4745 14 6 1.0373 -4.4633 -2.6311 15 6 1.4667 -5.5373 -1.9447 16 8 2.6516 -5.2388 -1.3872 17 6 4.2241 -3.2098 1.1698 18 8 4.0219 -2.6373 2.2198 19 6 4.7259 -4.6308 1.1710 20 6 4.8948 -5.1109 2.6139 21 6 5.4038 -6.5538 2.6150 22 7 5.5665 -7.0145 4.0003 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 4.5330 -2.5404 -2.0260 27 1 5.0464 -3.9932 -1.1349 28 1 1.9945 -2.4636 -2.8957 29 1 0.1189 -4.3842 -3.1941 30 1 0.9485 -6.4811 -1.8594 31 1 4.0078 -5.2701 0.6574 32 1 5.6862 -4.6774 0.6574 33 1 5.6128 -4.4716 3.1278 34 1 3.9343 -5.0644 3.1271 35 1 4.6855 -7.1927 2.1012 36 1 6.3642 -6.6007 2.1016 37 1 5.9024 -7.9656 4.0280 38 1 6.1785 -6.4002 4.5162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037824438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:21 Heat of formation + Delta-G solvation = -48.364678 kcal Electronic energy + Delta-G solvation = -20685.924437 eV Core-core repulsion = 17529.009075 eV Total energy + Delta-G solvation = -3156.915362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.33279 -40.77349 -37.12413 -36.52841 -34.75095 -33.76904 -32.79008 -31.56912 -29.95260 -27.02975 -26.47612 -24.11421 -22.57411 -22.20583 -21.57981 -19.98444 -19.15467 -18.31692 -17.86090 -17.25173 -16.95266 -16.58482 -16.33757 -16.18860 -15.51461 -15.30932 -14.84981 -14.54288 -14.22570 -13.97841 -13.73570 -13.62396 -13.46361 -13.23976 -12.95884 -12.77972 -12.59319 -12.37283 -12.29526 -12.03868 -11.75798 -11.72513 -10.77981 -10.70547 -10.65970 -9.65617 -9.56629 -9.23344 -8.27272 -6.30311 0.85375 1.31892 1.37236 1.46853 1.68828 1.85735 2.24804 2.33814 2.40096 3.06416 3.57523 3.72518 3.89300 4.03222 4.12962 4.24442 4.25625 4.43070 4.49139 4.51920 4.59857 4.71316 4.78658 4.79891 5.00201 5.04093 5.14664 5.20712 5.32849 5.35714 5.48930 5.57289 5.71218 6.27083 6.29030 6.30962 6.61013 6.64987 6.72478 7.26226 7.40141 8.89557 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.007077 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.968330 B = 3955.383865 C = 5223.552752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.942 3.058 4 H -0.252 1.252 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.516 4.516 8 H 0.028 0.972 9 C 0.219 3.781 10 N -0.597 5.597 11 C 0.192 3.808 12 C -0.044 4.044 13 C -0.193 4.193 14 C -0.238 4.238 15 C -0.040 4.040 16 O -0.181 6.181 17 C 0.499 3.501 18 O -0.590 6.590 19 C -0.126 4.126 20 C -0.097 4.097 21 C 0.071 3.929 22 N -0.866 5.866 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.152 0.848 30 H 0.239 0.761 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.353 0.647 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.576 -13.739 -4.958 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.176 1.176 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.097 3.903 10 N -0.327 5.327 11 C 0.069 3.931 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.257 4.257 15 C -0.107 4.107 16 O -0.078 6.078 17 C 0.289 3.711 18 O -0.471 6.471 19 C -0.166 4.166 20 C -0.136 4.136 21 C -0.060 4.060 22 N -0.398 5.398 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.255 0.745 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.744 -13.388 -4.184 18.951 hybrid contribution -0.123 1.220 -0.245 1.251 sum 12.621 -12.167 -4.429 18.082 Atomic orbital electron populations 1.70066 1.08209 1.27853 1.52679 1.25790 0.95535 1.03012 0.94401 0.85797 0.79246 0.78738 0.79673 1.17601 1.21404 1.17870 1.21446 0.91271 0.92972 1.49750 0.95324 1.19439 0.93111 0.80303 0.97409 1.48112 1.64195 1.14477 1.05938 1.20264 0.90564 0.96104 0.86145 1.23066 1.01386 0.83573 1.01406 1.21697 0.95490 1.00283 1.03812 1.22089 1.02287 0.94561 1.06802 1.24635 0.85948 1.01981 0.98129 1.83930 1.34520 1.29013 1.60305 1.21518 0.76896 0.89797 0.82848 1.90643 1.54182 1.69390 1.32852 1.21687 1.04378 0.90611 0.99920 1.21223 1.01248 0.96489 0.94623 1.21705 1.00191 0.94216 0.89903 1.58613 1.59076 1.08017 1.14094 0.92678 0.96095 0.92907 0.85534 0.85195 0.85091 0.83016 0.74509 0.88155 0.85257 0.92327 0.94191 0.90738 0.93090 0.83301 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.01 0.58 5.47 84.66 0.46 1.05 16 3 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 4 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.52 -30.04 9.69 25.60 0.25 -29.79 16 8 H 0.03 1.90 7.90 -2.91 -0.02 1.88 16 9 C 0.22 10.48 4.27 85.63 0.37 10.84 16 10 N -0.60 -23.53 2.44 -830.50 -2.03 -25.56 16 11 C 0.19 5.47 5.78 85.63 0.50 5.97 16 12 C -0.04 -1.46 6.85 24.83 0.17 -1.29 16 13 C -0.19 -7.21 10.40 22.19 0.23 -6.98 16 14 C -0.24 -7.93 10.91 22.19 0.24 -7.68 16 15 C -0.04 -1.12 12.09 66.97 0.81 -0.31 16 16 O -0.18 -5.62 9.55 -2.58 -0.02 -5.65 16 17 C 0.50 20.13 7.67 87.66 0.67 20.80 16 18 O -0.59 -30.09 15.56 -3.05 -0.05 -30.14 16 19 C -0.13 -3.43 4.25 29.85 0.13 -3.30 16 20 C -0.10 -2.68 4.76 30.60 0.15 -2.53 16 21 C 0.07 1.37 6.79 86.31 0.59 1.96 16 22 N -0.87 -16.28 9.62 -186.72 -1.80 -18.08 16 23 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.02 1.10 6.48 -2.38 -0.02 1.08 16 25 H 0.05 2.23 7.32 -2.39 -0.02 2.21 16 26 H 0.13 3.06 7.89 -2.39 -0.02 3.04 16 27 H 0.13 2.49 6.44 -2.39 -0.02 2.48 16 28 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 29 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.24 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.10 2.69 6.93 -2.38 -0.02 2.67 16 32 H 0.13 2.38 7.40 -2.39 -0.02 2.36 16 33 H 0.06 1.68 8.10 -2.38 -0.02 1.66 16 34 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.35 4.80 9.08 -89.69 -0.81 3.99 16 38 H 0.35 5.91 8.99 -89.70 -0.81 5.11 16 Total: -1.00 -81.78 321.70 2.25 -79.53 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.60 Total: 25.00 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.56 Total: -11.28 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.52 Total: -103.85 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.07 Total: -35.78 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -81.78 2.25 -79.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.169 kcal (2) G-P(sol) polarization free energy of solvation -81.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds