Wall clock time and date at job start Mon Mar 30 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 H 1.09002 * 109.47056 * 56.61127 * 3 2 1 5 5 N 1.46895 * 109.46903 * 296.61108 * 3 2 1 6 6 C 1.50697 * 109.47232 * 176.60913 * 3 2 1 7 7 O 1.21284 * 119.99862 * 92.01347 * 6 3 2 8 8 N 1.34777 * 120.00206 * 272.01733 * 6 3 2 9 9 C 1.46497 * 119.99796 * 5.01566 * 8 6 3 10 10 C 1.50704 * 109.47440 * 90.00114 * 9 8 6 11 11 H 1.08001 * 119.99508 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00160 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00114 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99901 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47447 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47070 * 120.00012 * 14 12 10 17 17 H 1.48503 * 109.46824 * 239.99515 * 14 12 10 18 18 C 1.46502 * 120.00032 * 185.00894 * 8 6 3 19 19 C 1.50701 * 109.46427 * 88.96652 * 18 8 6 20 20 C 1.34513 * 125.79152 * 94.37935 * 19 18 8 21 21 C 1.41379 * 106.84510 * 179.97438 * 20 19 18 22 22 C 1.34518 * 106.84009 * 359.97438 * 21 20 19 23 23 O 1.34307 * 108.41921 * 359.73748 * 22 21 20 24 24 H 1.08998 * 109.47674 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.46900 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47045 * 60.00717 * 1 2 3 27 27 H 1.09001 * 109.46645 * 119.99611 * 2 1 3 28 28 H 1.08999 * 109.47320 * 239.99682 * 2 1 3 29 29 H 1.00905 * 111.00172 * 176.05080 * 5 3 2 30 30 H 1.00905 * 111.00005 * 299.99494 * 5 3 2 31 31 H 1.09005 * 109.46860 * 209.99587 * 9 8 6 32 32 H 1.08995 * 109.47200 * 329.99914 * 9 8 6 33 33 H 0.96991 * 120.00004 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47113 * 208.96031 * 18 8 6 35 35 H 1.08996 * 109.47379 * 328.96635 * 18 8 6 36 36 H 1.08001 * 126.57708 * 0.03523 * 20 19 18 37 37 H 1.07998 * 126.58415 * 179.97438 * 21 20 19 38 38 H 1.07992 * 125.79027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 0.8581 5 7 1.6182 2.1109 -1.2382 6 6 3.5446 1.4434 0.0840 7 8 4.2086 1.4600 -0.9308 8 7 4.1524 1.4257 1.2868 9 6 3.3548 1.2948 2.5087 10 6 3.1942 -0.1643 2.8499 11 1 3.6413 -0.9186 2.2193 12 6 2.4758 -0.5362 3.9663 13 7 1.9311 0.3823 4.7339 14 14 2.2762 -2.3449 4.3888 15 1 2.9788 -3.1707 3.3741 16 1 2.8576 -2.6070 5.7298 17 1 0.8330 -2.6946 4.3980 18 6 5.6107 1.5373 1.3724 19 6 5.9991 2.9911 1.4539 20 6 6.2220 3.6836 2.5854 21 6 6.5588 5.0014 2.1996 22 6 6.5221 5.0353 0.8554 23 8 6.1886 3.8133 0.4090 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8873 3.0834 -1.2340 30 1 1.9879 1.6371 -2.0489 31 1 3.8594 1.8062 3.3285 32 1 2.3730 1.7413 2.3513 33 1 1.4260 0.1207 5.5195 34 1 5.9633 1.0166 2.2626 35 1 6.0619 1.0898 0.4869 36 1 6.1572 3.3052 3.5949 37 1 6.7994 5.8231 2.8578 38 1 6.7306 5.8976 0.2395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037824448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:00 Heat of formation + Delta-G solvation = -28.503886 kcal Electronic energy + Delta-G solvation = -21022.793699 eV Core-core repulsion = 17866.739566 eV Total energy + Delta-G solvation = -3156.054133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23211 -39.43649 -35.44483 -35.00692 -32.84986 -32.56090 -30.57138 -30.43244 -27.38230 -26.50963 -24.54691 -22.98132 -21.39769 -21.23099 -20.15300 -18.46252 -17.20173 -16.73139 -16.37218 -15.99383 -15.65760 -15.12792 -14.57801 -14.49719 -13.92471 -13.78256 -13.02035 -12.69540 -12.53769 -12.51287 -12.43111 -12.32195 -11.87299 -11.47952 -11.36771 -11.31537 -10.95817 -10.82891 -10.41268 -10.21981 -10.14700 -9.81411 -9.64018 -9.58885 -8.63455 -8.45255 -8.07713 -7.92006 -6.24866 -4.31783 1.97627 2.85701 3.13377 3.18256 3.27837 3.30854 3.45332 3.96553 4.28612 4.98268 5.01266 5.08960 5.21658 5.30196 5.38671 5.54672 5.71121 5.74400 6.00523 6.06058 6.07518 6.17354 6.23105 6.37339 6.40618 6.56390 6.64847 6.78108 6.81135 7.01049 7.09614 7.34281 7.42174 7.47943 7.68997 7.75543 7.96945 8.19229 8.69939 8.87132 9.35288 10.81920 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.007651 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.794888 B = 3658.954321 C = 4918.810052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.106 0.894 5 N -0.821 5.821 6 C 0.487 3.513 7 O -0.573 6.573 8 N -0.589 5.589 9 C 0.235 3.765 10 C -0.537 4.537 11 H 0.064 0.936 12 C 0.069 3.931 13 N -0.886 5.886 14 Si 0.893 3.107 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.281 1.281 18 C 0.192 3.808 19 C -0.015 4.015 20 C -0.203 4.203 21 C -0.215 4.215 22 C -0.054 4.054 23 O -0.168 6.168 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.336 0.664 30 H 0.343 0.657 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 5.144 -4.812 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C -0.033 4.033 4 H 0.124 0.876 5 N -0.349 5.349 6 C 0.273 3.727 7 O -0.453 6.453 8 N -0.319 5.319 9 C 0.116 3.884 10 C -0.576 4.576 11 H 0.082 0.918 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.207 1.207 18 C 0.068 3.932 19 C -0.066 4.066 20 C -0.223 4.223 21 C -0.235 4.235 22 C -0.122 4.122 23 O -0.064 6.064 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.125 4.887 -5.224 7.807 hybrid contribution 0.983 -0.470 0.647 1.267 sum 4.108 4.418 -4.577 7.572 Atomic orbital electron populations 1.21581 0.95225 1.00494 1.01984 1.21589 0.96643 0.93419 1.03728 1.21581 0.88846 0.98423 0.94469 0.87631 1.59248 1.65134 1.06533 1.04002 1.22025 0.92375 0.75187 0.83065 1.90594 1.67108 1.52315 1.35314 1.48410 1.05483 1.69496 1.08543 1.19552 0.90953 0.97508 0.80381 1.21447 1.34217 0.91784 1.10143 0.91807 1.24913 0.95034 0.97785 0.95769 1.69925 1.34110 1.32895 1.15492 0.86509 0.78152 0.84832 0.78468 1.19568 1.20863 1.20667 1.19720 0.83100 0.85800 1.04571 1.23256 1.03788 0.94740 0.84847 1.21671 1.07380 0.93936 0.99345 1.21791 1.08178 0.98332 0.95156 1.23966 1.05846 0.87202 0.95169 1.84105 1.67119 1.19137 1.35998 0.92741 0.93694 0.92409 0.87887 0.92995 0.85298 0.84393 0.94524 0.93986 0.92469 0.87008 0.89353 0.83342 0.83826 0.78700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.79 37.16 0.36 -1.86 16 2 C -0.12 -2.12 5.56 -26.73 -0.15 -2.27 16 3 C 0.08 1.51 2.48 -68.87 -0.17 1.34 16 4 H 0.11 2.07 6.05 -51.93 -0.31 1.76 16 5 N -0.82 -13.28 8.44 -5.66 -0.05 -13.33 16 6 C 0.49 10.04 6.84 -10.99 -0.08 9.96 16 7 O -0.57 -12.77 15.90 5.55 0.09 -12.68 16 8 N -0.59 -12.12 2.44 -176.43 -0.43 -12.55 16 9 C 0.24 5.33 5.00 -5.19 -0.03 5.31 16 10 C -0.54 -13.08 7.26 -34.44 -0.25 -13.33 16 11 H 0.06 1.58 7.71 -52.49 -0.40 1.18 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -23.38 13.29 55.43 0.74 -22.65 16 14 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.19 3.58 5.97 -5.19 -0.03 3.54 16 19 C -0.01 -0.26 6.90 -35.62 -0.25 -0.51 16 20 C -0.20 -3.36 10.81 -39.70 -0.43 -3.79 16 21 C -0.22 -3.10 10.91 -39.70 -0.43 -3.53 16 22 C -0.05 -0.76 12.09 29.42 0.36 -0.41 16 23 O -0.17 -3.03 10.65 5.68 0.06 -2.97 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.89 7.70 -51.93 -0.40 0.49 16 27 H 0.10 2.14 5.67 -51.93 -0.29 1.85 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.34 5.15 9.06 -39.29 -0.36 4.80 16 30 H 0.34 5.51 8.55 -39.29 -0.34 5.17 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 1.00 5.76 -51.93 -0.30 0.70 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.11 1.93 8.06 -51.93 -0.42 1.51 16 35 H 0.09 1.66 7.39 -51.93 -0.38 1.27 16 36 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -28.04 321.56 -6.25 -34.29 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.30 Total: 14.22 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.19 Total: -3.91 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.26 Total: -48.52 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.15 Total: -15.65 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.04 -6.25 -34.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.788 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds