Wall clock time and date at job start Mon Mar 30 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 H 1.09002 * 109.47056 * 56.61127 * 3 2 1 5 5 N 1.46895 * 109.46903 * 296.61108 * 3 2 1 6 6 C 1.50697 * 109.47232 * 176.60913 * 3 2 1 7 7 O 1.21284 * 119.99862 * 92.01347 * 6 3 2 8 8 N 1.34777 * 120.00206 * 272.01733 * 6 3 2 9 9 C 1.46497 * 119.99796 * 5.01566 * 8 6 3 10 10 C 1.50704 * 109.47440 * 90.00114 * 9 8 6 11 11 H 1.08001 * 119.99508 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00160 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00114 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99901 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47447 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47070 * 120.00012 * 14 12 10 17 17 H 1.48503 * 109.46824 * 239.99515 * 14 12 10 18 18 C 1.46502 * 120.00032 * 185.00894 * 8 6 3 19 19 C 1.50701 * 109.46427 * 88.96652 * 18 8 6 20 20 C 1.34513 * 125.79152 * 94.37935 * 19 18 8 21 21 C 1.41379 * 106.84510 * 179.97438 * 20 19 18 22 22 C 1.34518 * 106.84009 * 359.97438 * 21 20 19 23 23 O 1.34307 * 108.41921 * 359.73748 * 22 21 20 24 24 H 1.08998 * 109.47674 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.46900 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47045 * 60.00717 * 1 2 3 27 27 H 1.09001 * 109.46645 * 119.99611 * 2 1 3 28 28 H 1.08999 * 109.47320 * 239.99682 * 2 1 3 29 29 H 1.00905 * 111.00172 * 176.05080 * 5 3 2 30 30 H 1.00905 * 111.00005 * 299.99494 * 5 3 2 31 31 H 1.09005 * 109.46860 * 209.99587 * 9 8 6 32 32 H 1.08995 * 109.47200 * 329.99914 * 9 8 6 33 33 H 0.96991 * 120.00004 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47113 * 208.96031 * 18 8 6 35 35 H 1.08996 * 109.47379 * 328.96635 * 18 8 6 36 36 H 1.08001 * 126.57708 * 0.03523 * 20 19 18 37 37 H 1.07998 * 126.58415 * 179.97438 * 21 20 19 38 38 H 1.07992 * 125.79027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 0.8581 5 7 1.6182 2.1109 -1.2382 6 6 3.5446 1.4434 0.0840 7 8 4.2086 1.4600 -0.9308 8 7 4.1524 1.4257 1.2868 9 6 3.3548 1.2948 2.5087 10 6 3.1942 -0.1643 2.8499 11 1 3.6413 -0.9186 2.2193 12 6 2.4758 -0.5362 3.9663 13 7 1.9311 0.3823 4.7339 14 14 2.2762 -2.3449 4.3888 15 1 2.9788 -3.1707 3.3741 16 1 2.8576 -2.6070 5.7298 17 1 0.8330 -2.6946 4.3980 18 6 5.6107 1.5373 1.3724 19 6 5.9991 2.9911 1.4539 20 6 6.2220 3.6836 2.5854 21 6 6.5588 5.0014 2.1996 22 6 6.5221 5.0353 0.8554 23 8 6.1886 3.8133 0.4090 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8873 3.0834 -1.2340 30 1 1.9879 1.6371 -2.0489 31 1 3.8594 1.8062 3.3285 32 1 2.3730 1.7413 2.3513 33 1 1.4260 0.1207 5.5195 34 1 5.9633 1.0166 2.2626 35 1 6.0619 1.0898 0.4869 36 1 6.1572 3.3052 3.5949 37 1 6.7994 5.8231 2.8578 38 1 6.7306 5.8976 0.2395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037824448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:59 Heat of formation + Delta-G solvation = -46.249791 kcal Electronic energy + Delta-G solvation = -21023.563219 eV Core-core repulsion = 17866.739566 eV Total energy + Delta-G solvation = -3156.823654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.49121 -41.06477 -37.06933 -36.57420 -34.65351 -33.89495 -31.95994 -31.85803 -29.16108 -27.94837 -26.02590 -24.79827 -22.69534 -22.62521 -21.45543 -20.06710 -18.71061 -18.38864 -17.99452 -17.54222 -17.08497 -16.55352 -16.31252 -16.00600 -15.36225 -15.24236 -14.61875 -14.31886 -14.01056 -13.88870 -13.74720 -13.61552 -13.51456 -13.10612 -12.99085 -12.81264 -12.63747 -12.52265 -12.10489 -11.81268 -11.69178 -11.60090 -11.19522 -10.86429 -10.56576 -9.85680 -9.63145 -9.39200 -8.18584 -6.30597 0.70652 1.42221 1.46619 1.54308 1.57967 1.66531 2.14800 2.36930 2.47839 3.12842 3.54964 3.67854 3.82998 4.04281 4.12178 4.14264 4.24456 4.34912 4.52992 4.64343 4.72222 4.84105 4.90226 5.00495 5.03206 5.16775 5.17829 5.24414 5.40291 5.55633 5.57926 5.62748 5.76825 5.98902 6.05344 6.21623 6.43313 6.48935 6.79731 7.18285 7.40216 8.87900 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.007651 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.794888 B = 3658.954321 C = 4918.810052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.089 3.911 4 H 0.094 0.906 5 N -0.808 5.808 6 C 0.482 3.518 7 O -0.591 6.591 8 N -0.591 5.591 9 C 0.253 3.747 10 C -0.535 4.535 11 H 0.056 0.944 12 C 0.029 3.971 13 N -0.916 5.916 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.278 1.278 18 C 0.192 3.808 19 C -0.045 4.045 20 C -0.205 4.205 21 C -0.222 4.222 22 C -0.045 4.045 23 O -0.193 6.193 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.342 0.658 30 H 0.347 0.653 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.174 0.826 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 5.660 -5.230 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.026 4.026 4 H 0.112 0.888 5 N -0.337 5.337 6 C 0.270 3.730 7 O -0.473 6.473 8 N -0.320 5.320 9 C 0.133 3.867 10 C -0.574 4.574 11 H 0.075 0.925 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.204 1.204 18 C 0.068 3.932 19 C -0.096 4.096 20 C -0.225 4.225 21 C -0.241 4.241 22 C -0.112 4.112 23 O -0.089 6.089 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.100 0.900 36 H 0.169 0.831 37 H 0.192 0.808 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.181 5.406 -5.645 8.439 hybrid contribution 1.030 -0.540 0.748 1.383 sum 4.211 4.867 -4.897 8.087 Atomic orbital electron populations 1.21522 0.93555 1.01432 1.01997 1.21514 0.98032 0.92894 1.02628 1.21479 0.87348 0.98710 0.95091 0.88831 1.59206 1.64543 1.06812 1.03097 1.22434 0.93233 0.74652 0.82697 1.90574 1.67745 1.53311 1.35670 1.48397 1.06336 1.69357 1.07945 1.19184 0.90433 0.96439 0.80661 1.21543 1.33686 0.92309 1.09853 0.92542 1.25526 0.94864 1.01040 0.95747 1.70008 1.34971 1.34488 1.16012 0.85643 0.78049 0.80798 0.78070 1.19408 1.20692 1.20357 1.19727 0.81858 0.87092 1.04492 1.23032 1.06406 0.94640 0.85542 1.21914 1.06409 0.95107 0.99068 1.22154 1.07998 0.98093 0.95814 1.24887 1.03544 0.86798 0.95958 1.84080 1.67811 1.20525 1.36486 0.93835 0.92347 0.91170 0.90461 0.92489 0.84561 0.83981 0.96014 0.95111 0.92362 0.86463 0.89995 0.83125 0.80819 0.74468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.79 71.98 0.70 -3.33 16 2 C -0.11 -4.07 5.56 30.59 0.17 -3.90 16 3 C 0.09 3.28 2.48 44.17 0.11 3.39 16 4 H 0.09 3.71 6.05 -2.39 -0.01 3.70 16 5 N -0.81 -25.26 8.44 -171.81 -1.45 -26.71 16 6 C 0.48 20.02 6.84 87.66 0.60 20.61 16 7 O -0.59 -26.37 15.90 -3.04 -0.05 -26.42 16 8 N -0.59 -24.73 2.44 -830.50 -2.03 -26.76 16 9 C 0.25 11.70 5.00 85.63 0.43 12.13 16 10 C -0.54 -26.33 7.26 25.60 0.19 -26.14 16 11 H 0.06 2.83 7.71 -2.91 -0.02 2.81 16 12 C 0.03 1.47 5.46 84.65 0.46 1.93 16 13 N -0.92 -48.56 13.29 21.45 0.28 -48.27 16 14 Si 0.95 40.35 29.54 68.60 2.03 42.37 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 C 0.19 7.28 5.97 85.63 0.51 7.79 16 19 C -0.05 -1.63 6.90 24.83 0.17 -1.46 16 20 C -0.20 -6.64 10.81 22.19 0.24 -6.40 16 21 C -0.22 -5.88 10.91 22.19 0.24 -5.64 16 22 C -0.04 -1.16 12.09 66.97 0.81 -0.35 16 23 O -0.19 -6.77 10.65 -2.58 -0.03 -6.80 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.03 7.70 -2.39 -0.02 2.02 16 27 H 0.08 3.22 5.67 -2.39 -0.01 3.21 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.34 10.12 9.06 -89.69 -0.81 9.30 16 30 H 0.35 10.68 8.55 -89.69 -0.77 9.91 16 31 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 32 H 0.03 1.50 5.76 -2.39 -0.01 1.49 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.12 4.18 8.06 -2.39 -0.02 4.16 16 35 H 0.08 3.16 7.39 -2.39 -0.02 3.15 16 36 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.24 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -59.13 321.56 2.89 -56.23 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.50 Total: 37.73 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 4.63 Total: -1.38 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.19 Total: -101.74 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.08 Total: -33.22 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -59.13 2.89 -56.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.984 kcal (2) G-P(sol) polarization free energy of solvation -59.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds