Wall clock time and date at job start Mon Mar 30 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09004 * 109.46932 * 304.99376 * 3 2 1 5 5 N 1.46895 * 109.47371 * 64.99623 * 3 2 1 6 6 C 1.50702 * 109.47129 * 185.00200 * 3 2 1 7 7 O 1.21287 * 119.99486 * 259.99745 * 6 3 2 8 8 N 1.34777 * 120.00274 * 79.99505 * 6 3 2 9 9 C 1.46493 * 119.99814 * 0.02562 * 8 6 3 10 10 C 1.50705 * 109.47066 * 269.99781 * 9 8 6 11 11 H 1.08001 * 119.99910 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99970 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99777 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00011 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47002 * 90.00371 * 14 12 10 16 16 H 1.48500 * 109.47302 * 210.00466 * 14 12 10 17 17 H 1.48505 * 109.47445 * 330.00516 * 14 12 10 18 18 C 1.46501 * 119.99796 * 179.97438 * 8 6 3 19 19 C 1.50693 * 109.47423 * 270.00177 * 18 8 6 20 20 C 1.34512 * 125.79339 * 89.99938 * 19 18 8 21 21 C 1.41376 * 106.84688 * 179.79418 * 20 19 18 22 22 C 1.34517 * 106.83881 * 0.37683 * 21 20 19 23 23 O 1.34305 * 125.78769 * 270.03097 * 19 18 8 24 24 H 1.09000 * 109.47134 * 60.00233 * 1 2 3 25 25 H 1.08998 * 109.47043 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47439 * 300.00091 * 1 2 3 27 27 H 1.08997 * 109.47823 * 239.99240 * 2 1 3 28 28 H 1.09003 * 109.47221 * 119.99249 * 2 1 3 29 29 H 1.00899 * 110.99934 * 296.04673 * 5 3 2 30 30 H 1.00899 * 110.99592 * 60.00402 * 5 3 2 31 31 H 1.08993 * 109.47447 * 29.99951 * 9 8 6 32 32 H 1.09004 * 109.46835 * 150.00252 * 9 8 6 33 33 H 0.97001 * 119.99311 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46893 * 149.99867 * 18 8 6 35 35 H 1.09004 * 109.47276 * 30.00562 * 18 8 6 36 36 H 1.08006 * 126.57600 * 0.02562 * 20 19 18 37 37 H 1.07998 * 126.58562 * 180.23597 * 21 20 19 38 38 H 1.08002 * 125.79423 * 179.89440 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5419 1.4443 -0.1239 7 8 4.2314 1.5973 0.8621 8 7 4.1188 1.2758 -1.3302 9 6 3.2859 1.0915 -2.5211 10 6 3.0183 -0.3776 -2.7246 11 1 3.4275 -1.1015 -2.0354 12 6 2.2512 -0.7975 -3.7905 13 7 2.0173 -2.0795 -3.9677 14 14 1.5429 0.4547 -4.9821 15 1 2.5071 0.6865 -6.0875 16 1 0.2657 -0.0591 -5.5389 17 1 1.2929 1.7321 -4.2673 18 6 5.5789 1.2781 -1.4506 19 6 6.0604 2.6846 -1.6973 20 6 6.4002 3.5773 -0.7503 21 6 6.7948 4.7571 -1.4220 22 6 6.6646 4.5176 -2.7393 23 8 6.2224 3.2596 -2.9002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.6476 2.1685 1.3313 30 1 2.0422 1.6181 2.0511 31 1 2.3408 1.6180 -2.3886 32 1 3.8049 1.4904 -3.3927 33 1 1.4779 -2.3748 -4.7179 34 1 5.8757 0.6410 -2.2837 35 1 6.0201 0.8995 -0.5286 36 1 6.3795 3.4214 0.3183 37 1 7.1335 5.6752 -0.9652 38 1 6.8831 5.2166 -3.5330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037824449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:03 Heat of formation + Delta-G solvation = -19.923389 kcal Electronic energy + Delta-G solvation = -21105.441827 eV Core-core repulsion = 17949.759772 eV Total energy + Delta-G solvation = -3155.682055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.23450 -39.45096 -35.57651 -35.22225 -32.84668 -32.54419 -30.61006 -30.26348 -27.90327 -26.75383 -24.66253 -22.58665 -21.40891 -21.33964 -20.17699 -18.40507 -17.39337 -17.01874 -16.73914 -16.00166 -15.30896 -14.83590 -14.57977 -14.21157 -13.99408 -13.94545 -13.31842 -13.07267 -12.63686 -12.53625 -12.42494 -12.37529 -12.04679 -11.76202 -11.50481 -11.31403 -11.08350 -10.88642 -10.67920 -10.34522 -10.29154 -9.66870 -9.63325 -9.16575 -8.77529 -8.33678 -8.18037 -7.91616 -6.29674 -4.30100 1.96868 2.86402 3.14330 3.15903 3.22309 3.24950 3.45088 3.84201 4.21119 4.96621 5.02028 5.07122 5.16524 5.30562 5.35957 5.48114 5.53429 5.70828 5.86265 5.98389 6.01313 6.07030 6.14696 6.26209 6.36049 6.37659 6.46161 6.58865 6.68502 6.79666 7.05518 7.16648 7.36047 7.44887 7.46819 7.77177 8.02959 8.31645 8.72049 8.86128 9.29355 10.81695 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.008509 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.338272 B = 3289.838254 C = 4579.124078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.175 4.175 3 C 0.082 3.918 4 H 0.100 0.900 5 N -0.833 5.833 6 C 0.532 3.468 7 O -0.557 6.557 8 N -0.588 5.588 9 C 0.205 3.795 10 C -0.540 4.540 11 H 0.083 0.917 12 C 0.081 3.919 13 N -0.885 5.885 14 Si 0.867 3.133 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.197 3.803 19 C -0.020 4.020 20 C -0.195 4.195 21 C -0.218 4.218 22 C -0.050 4.050 23 O -0.172 6.172 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.130 0.870 28 H 0.052 0.948 29 H 0.340 0.660 30 H 0.345 0.655 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 8.658 3.644 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.214 4.214 3 C -0.032 4.032 4 H 0.117 0.883 5 N -0.364 5.364 6 C 0.320 3.680 7 O -0.436 6.436 8 N -0.318 5.318 9 C 0.084 3.916 10 C -0.578 4.578 11 H 0.101 0.899 12 C -0.124 4.124 13 N -0.522 5.522 14 Si 0.694 3.306 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.073 3.927 19 C -0.071 4.071 20 C -0.215 4.215 21 C -0.237 4.237 22 C -0.118 4.118 23 O -0.068 6.068 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.147 0.853 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.967 9.074 3.467 10.157 hybrid contribution -0.911 -0.080 -0.524 1.053 sum 2.057 8.994 2.943 9.684 Atomic orbital electron populations 1.21671 0.95975 1.01691 1.00596 1.22611 0.96159 0.96457 1.06197 1.21310 0.92421 0.95392 0.94117 0.88269 1.58663 1.15412 1.58508 1.03829 1.20381 0.90223 0.74901 0.82474 1.90571 1.65015 1.50770 1.37207 1.47934 1.05123 1.70051 1.08725 1.19921 0.90450 0.98167 0.83050 1.21275 1.33445 0.90448 1.12633 0.89868 1.24829 0.95468 0.95033 0.97033 1.69881 1.38194 1.13912 1.30215 0.86977 0.79306 0.82175 0.82162 1.19803 1.20834 1.18825 1.19693 0.81694 0.87295 1.03970 1.23243 1.03980 0.97982 0.81913 1.21682 1.05890 0.93304 1.00614 1.21807 1.07968 1.00230 0.93705 1.23959 1.04337 0.85242 0.98306 1.84060 1.65496 1.24673 1.32553 0.92571 0.92513 0.94170 0.85267 0.92896 0.84638 0.84161 0.94596 0.95027 0.92247 0.88366 0.87498 0.83398 0.83910 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.68 37.15 0.36 -1.82 16 2 C -0.18 -3.15 5.49 -26.73 -0.15 -3.29 16 3 C 0.08 1.48 2.47 -68.86 -0.17 1.31 16 4 H 0.10 1.84 6.31 -51.93 -0.33 1.52 16 5 N -0.83 -13.22 8.94 -5.65 -0.05 -13.27 16 6 C 0.53 10.86 6.92 -10.98 -0.08 10.78 16 7 O -0.56 -12.12 15.83 5.55 0.09 -12.04 16 8 N -0.59 -11.93 2.44 -176.44 -0.43 -12.36 16 9 C 0.21 4.46 3.96 -5.20 -0.02 4.44 16 10 C -0.54 -13.30 7.27 -34.44 -0.25 -13.55 16 11 H 0.08 2.27 7.68 -52.49 -0.40 1.86 16 12 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.89 -24.42 13.96 55.43 0.77 -23.64 16 14 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 18 C 0.20 3.62 5.93 -5.20 -0.03 3.59 16 19 C -0.02 -0.35 6.90 -35.63 -0.25 -0.60 16 20 C -0.19 -3.29 10.81 -39.71 -0.43 -3.72 16 21 C -0.22 -3.14 10.91 -39.70 -0.43 -3.58 16 22 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 23 O -0.17 -2.99 10.65 5.68 0.06 -2.93 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.51 6.87 -51.93 -0.36 0.16 16 27 H 0.13 2.78 4.45 -51.93 -0.23 2.55 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.34 4.51 7.55 -39.29 -0.30 4.22 16 30 H 0.34 5.43 8.58 -39.29 -0.34 5.09 16 31 H 0.04 0.78 5.00 -51.93 -0.26 0.52 16 32 H 0.03 0.70 7.50 -51.93 -0.39 0.31 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.10 1.75 8.07 -51.93 -0.42 1.33 16 35 H 0.11 1.89 7.42 -51.93 -0.39 1.50 16 36 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 37 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.20 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -28.83 314.29 -5.79 -34.62 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -5.11 Total: 14.99 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.19 Total: -4.80 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.29 Total: -49.28 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.15 Total: -14.96 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.83 -5.79 -34.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.695 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds