Wall clock time and date at job start Mon Mar 30 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09004 * 109.46932 * 304.99376 * 3 2 1 5 5 N 1.46895 * 109.47371 * 64.99623 * 3 2 1 6 6 C 1.50702 * 109.47129 * 185.00200 * 3 2 1 7 7 O 1.21287 * 119.99486 * 259.99745 * 6 3 2 8 8 N 1.34777 * 120.00274 * 79.99505 * 6 3 2 9 9 C 1.46493 * 119.99814 * 0.02562 * 8 6 3 10 10 C 1.50705 * 109.47066 * 269.99781 * 9 8 6 11 11 H 1.08001 * 119.99910 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99970 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99777 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00011 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47002 * 90.00371 * 14 12 10 16 16 H 1.48500 * 109.47302 * 210.00466 * 14 12 10 17 17 H 1.48505 * 109.47445 * 330.00516 * 14 12 10 18 18 C 1.46501 * 119.99796 * 179.97438 * 8 6 3 19 19 C 1.50693 * 109.47423 * 270.00177 * 18 8 6 20 20 C 1.34512 * 125.79339 * 89.99938 * 19 18 8 21 21 C 1.41376 * 106.84688 * 179.79418 * 20 19 18 22 22 C 1.34517 * 106.83881 * 0.37683 * 21 20 19 23 23 O 1.34305 * 125.78769 * 270.03097 * 19 18 8 24 24 H 1.09000 * 109.47134 * 60.00233 * 1 2 3 25 25 H 1.08998 * 109.47043 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47439 * 300.00091 * 1 2 3 27 27 H 1.08997 * 109.47823 * 239.99240 * 2 1 3 28 28 H 1.09003 * 109.47221 * 119.99249 * 2 1 3 29 29 H 1.00899 * 110.99934 * 296.04673 * 5 3 2 30 30 H 1.00899 * 110.99592 * 60.00402 * 5 3 2 31 31 H 1.08993 * 109.47447 * 29.99951 * 9 8 6 32 32 H 1.09004 * 109.46835 * 150.00252 * 9 8 6 33 33 H 0.97001 * 119.99311 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46893 * 149.99867 * 18 8 6 35 35 H 1.09004 * 109.47276 * 30.00562 * 18 8 6 36 36 H 1.08006 * 126.57600 * 0.02562 * 20 19 18 37 37 H 1.07998 * 126.58562 * 180.23597 * 21 20 19 38 38 H 1.08002 * 125.79423 * 179.89440 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6513 2.0994 1.2551 6 6 3.5419 1.4443 -0.1239 7 8 4.2314 1.5973 0.8621 8 7 4.1188 1.2758 -1.3302 9 6 3.2859 1.0915 -2.5211 10 6 3.0183 -0.3776 -2.7246 11 1 3.4275 -1.1015 -2.0354 12 6 2.2512 -0.7975 -3.7905 13 7 2.0173 -2.0795 -3.9677 14 14 1.5429 0.4547 -4.9821 15 1 2.5071 0.6865 -6.0875 16 1 0.2657 -0.0591 -5.5389 17 1 1.2929 1.7321 -4.2673 18 6 5.5789 1.2781 -1.4506 19 6 6.0604 2.6846 -1.6973 20 6 6.4002 3.5773 -0.7503 21 6 6.7948 4.7571 -1.4220 22 6 6.6646 4.5176 -2.7393 23 8 6.2224 3.2596 -2.9002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.6476 2.1685 1.3313 30 1 2.0422 1.6181 2.0511 31 1 2.3408 1.6180 -2.3886 32 1 3.8049 1.4904 -3.3927 33 1 1.4779 -2.3748 -4.7179 34 1 5.8757 0.6410 -2.2837 35 1 6.0201 0.8995 -0.5286 36 1 6.3795 3.4214 0.3183 37 1 7.1335 5.6752 -0.9652 38 1 6.8831 5.2166 -3.5330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037824449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:03 Heat of formation + Delta-G solvation = -39.518841 kcal Electronic energy + Delta-G solvation = -21106.291550 eV Core-core repulsion = 17949.759772 eV Total energy + Delta-G solvation = -3156.531778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.47131 -41.03700 -37.06027 -36.85157 -34.64170 -33.90006 -32.03786 -31.59366 -29.66911 -28.13065 -26.07696 -24.41198 -22.79446 -22.58961 -21.45947 -19.97520 -19.09106 -18.63519 -18.13474 -17.50253 -16.68170 -16.43550 -16.05242 -15.82262 -15.40185 -15.30646 -14.81548 -14.61241 -14.33968 -13.87846 -13.76162 -13.72723 -13.56177 -13.21072 -13.08212 -12.79417 -12.68122 -12.47466 -12.27542 -11.96664 -11.82254 -11.55573 -10.88773 -10.76600 -10.68278 -9.71276 -9.59206 -9.39338 -8.28236 -6.31957 0.72104 1.38564 1.42056 1.48921 1.62577 1.68645 2.13342 2.33903 2.35776 3.04541 3.58874 3.74869 3.81931 4.04600 4.10322 4.14772 4.16440 4.36548 4.50697 4.55623 4.60465 4.66313 4.81145 4.86098 4.92457 5.04376 5.14104 5.19419 5.31743 5.41426 5.53855 5.56634 5.61867 6.08838 6.18156 6.23775 6.54934 6.59948 6.69836 7.21292 7.32515 8.86418 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.008509 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.338272 B = 3289.838254 C = 4579.124078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C 0.089 3.911 4 H 0.099 0.901 5 N -0.829 5.829 6 C 0.523 3.477 7 O -0.574 6.574 8 N -0.591 5.591 9 C 0.216 3.784 10 C -0.526 4.526 11 H 0.044 0.956 12 C 0.032 3.968 13 N -0.932 5.932 14 Si 0.925 3.075 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.243 1.243 18 C 0.196 3.804 19 C -0.046 4.046 20 C -0.199 4.199 21 C -0.226 4.226 22 C -0.038 4.038 23 O -0.191 6.191 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.357 0.643 30 H 0.347 0.653 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.172 0.828 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 11.353 3.352 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.208 4.208 3 C -0.025 4.025 4 H 0.117 0.883 5 N -0.362 5.362 6 C 0.312 3.688 7 O -0.455 6.455 8 N -0.322 5.322 9 C 0.094 3.906 10 C -0.564 4.564 11 H 0.063 0.937 12 C -0.168 4.168 13 N -0.571 5.571 14 Si 0.749 3.251 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.166 1.166 18 C 0.073 3.927 19 C -0.097 4.097 20 C -0.220 4.220 21 C -0.245 4.245 22 C -0.105 4.105 23 O -0.087 6.087 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.158 0.842 37 H 0.190 0.810 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.501 11.786 3.194 12.464 hybrid contribution -0.666 -0.916 -0.354 1.187 sum 1.836 10.870 2.839 11.383 Atomic orbital electron populations 1.21639 0.93663 1.02115 1.02026 1.22465 0.98158 0.96031 1.04166 1.21193 0.90747 0.95384 0.95213 0.88333 1.58619 1.16835 1.57896 1.02857 1.20864 0.91309 0.74416 0.82166 1.90551 1.65693 1.51655 1.37555 1.47977 1.05902 1.69891 1.08393 1.19706 0.91099 0.96019 0.83754 1.21279 1.32352 0.91358 1.11415 0.93733 1.25540 0.95956 0.96570 0.98762 1.70014 1.39759 1.16059 1.31277 0.86046 0.78434 0.80596 0.80044 1.19525 1.20828 1.16644 1.19671 0.80753 0.88453 1.03838 1.22957 1.06212 0.97860 0.82634 1.21817 1.05512 0.94386 1.00260 1.22145 1.08040 1.00425 0.93850 1.24898 1.01797 0.84191 0.99596 1.84043 1.66112 1.26240 1.32306 0.92701 0.92670 0.91106 0.89016 0.93105 0.82713 0.83928 0.93665 0.94729 0.92274 0.88669 0.87623 0.84170 0.81011 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.68 71.98 0.70 -3.30 16 2 C -0.17 -6.03 5.49 30.59 0.17 -5.86 16 3 C 0.09 3.15 2.47 44.17 0.11 3.26 16 4 H 0.10 3.50 6.31 -2.39 -0.02 3.49 16 5 N -0.83 -24.75 8.94 -171.80 -1.54 -26.28 16 6 C 0.52 21.35 6.92 87.66 0.61 21.96 16 7 O -0.57 -25.07 15.83 -3.05 -0.05 -25.12 16 8 N -0.59 -24.20 2.44 -830.51 -2.03 -26.22 16 9 C 0.22 9.32 3.96 85.64 0.34 9.66 16 10 C -0.53 -26.48 7.27 25.60 0.19 -26.29 16 11 H 0.04 2.56 7.68 -2.91 -0.02 2.53 16 12 C 0.03 1.65 5.47 84.65 0.46 2.11 16 13 N -0.93 -52.75 13.96 21.45 0.30 -52.46 16 14 Si 0.93 39.26 27.47 68.60 1.88 41.14 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 18 C 0.20 7.34 5.93 85.63 0.51 7.85 16 19 C -0.05 -1.61 6.90 24.83 0.17 -1.44 16 20 C -0.20 -6.54 10.81 22.19 0.24 -6.30 16 21 C -0.23 -5.89 10.91 22.19 0.24 -5.65 16 22 C -0.04 -0.93 12.09 66.97 0.81 -0.12 16 23 O -0.19 -6.30 10.65 -2.58 -0.03 -6.33 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.61 6.87 -2.39 -0.02 1.60 16 27 H 0.09 4.06 4.45 -2.39 -0.01 4.05 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.36 8.47 7.55 -89.69 -0.68 7.80 16 30 H 0.35 10.37 8.58 -89.69 -0.77 9.60 16 31 H 0.05 1.89 5.00 -2.39 -0.01 1.88 16 32 H 0.03 1.49 7.50 -2.38 -0.02 1.47 16 33 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.10 3.51 8.07 -2.39 -0.02 3.50 16 35 H 0.11 3.88 7.42 -2.39 -0.02 3.87 16 36 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 37 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.24 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -62.96 314.29 2.67 -60.28 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.41 Total: 39.11 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 4.54 Total: -4.13 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.26 Total: -104.96 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.08 Total: -31.45 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.88 Total: 41.14 kcal Total: -62.96 2.67 -60.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037824449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.764 kcal (2) G-P(sol) polarization free energy of solvation -62.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds