Wall clock time and date at job start Mon Mar 30 2020 04:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34516 * 125.78754 * 2 1 4 4 C 1.41376 * 106.84089 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.84242 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.79319 * 179.73499 * 5 4 3 7 7 H 1.08998 * 109.47371 * 340.00083 * 6 5 4 8 8 C 1.53002 * 109.47388 * 100.00077 * 6 5 4 9 9 N 1.46904 * 109.47587 * 219.99981 * 6 5 4 10 10 C 1.46894 * 111.00241 * 154.99933 * 9 6 5 11 11 C 1.50700 * 109.47163 * 180.02562 * 10 9 6 12 12 O 1.21278 * 119.99825 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99848 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99763 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00205 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00526 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99787 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00445 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46881 * 90.00269 * 19 17 15 21 21 H 1.48496 * 109.47146 * 209.99789 * 19 17 15 22 22 H 1.48495 * 109.46878 * 330.00297 * 19 17 15 23 23 O 1.34298 * 125.79175 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47056 * 89.99861 * 1 2 3 25 25 H 1.09000 * 109.46884 * 209.99804 * 1 2 3 26 26 H 1.09003 * 109.47129 * 329.99652 * 1 2 3 27 27 H 1.08004 * 126.58023 * 0.02562 * 3 2 1 28 28 H 1.07995 * 126.58211 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47318 * 59.99489 * 8 6 5 30 30 H 1.08994 * 109.47797 * 180.02562 * 8 6 5 31 31 H 1.09008 * 109.46694 * 300.00358 * 8 6 5 32 32 H 1.00900 * 110.99178 * 31.04532 * 9 6 5 33 33 H 1.09005 * 109.47076 * 299.99976 * 10 9 6 34 34 H 1.08998 * 109.47210 * 60.00235 * 10 9 6 35 35 H 0.97000 * 120.00503 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47491 * 300.00153 * 14 13 11 37 37 H 1.09005 * 109.47185 * 60.00407 * 14 13 11 38 38 H 0.96992 * 120.00289 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6322 -0.0006 5 6 3.5815 -0.7121 -0.0015 6 6 4.7706 -1.6377 -0.0081 7 1 5.6488 -1.0986 -0.3633 8 6 5.0261 -2.1499 1.4109 9 7 4.5011 -2.7750 -0.8980 10 6 5.7521 -3.3577 -1.4012 11 6 5.4362 -4.5185 -2.3089 12 8 4.2824 -4.8293 -2.5165 13 7 6.4357 -5.2104 -2.8907 14 6 6.1286 -6.3392 -3.7727 15 6 7.4119 -6.9361 -4.2900 16 1 8.3614 -6.5170 -3.9914 17 6 7.3741 -8.0181 -5.1438 18 7 6.2178 -8.5290 -5.5071 19 14 8.9649 -8.7585 -5.7845 20 1 9.4247 -9.8226 -4.8563 21 1 8.7325 -9.3421 -7.1301 22 1 10.0019 -7.6996 -5.8764 23 8 2.2925 -1.0894 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9666 2.1205 0.0004 28 1 4.5212 1.2434 -0.0004 29 1 4.1479 -2.6890 1.7662 30 1 5.8865 -2.8191 1.4063 31 1 5.2261 -1.3060 2.0712 32 1 3.8969 -2.5033 -1.6590 33 1 6.3068 -2.6022 -1.9578 34 1 6.3542 -3.7058 -0.5620 35 1 7.3585 -4.9611 -2.7256 36 1 5.5744 -7.0949 -3.2161 37 1 5.5260 -5.9912 -4.6117 38 1 6.1911 -9.2899 -6.1080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037979139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:50 Heat of formation + Delta-G solvation = -30.490282 kcal Electronic energy + Delta-G solvation = -19332.135266 eV Core-core repulsion = 16175.994996 eV Total energy + Delta-G solvation = -3156.140270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71370 -38.91235 -36.61860 -34.14149 -33.28007 -32.40995 -32.19346 -30.45727 -27.79285 -26.69641 -25.48205 -22.60225 -21.86570 -21.73165 -20.07825 -19.68330 -17.70170 -16.56574 -16.33208 -15.70628 -15.51910 -15.43570 -14.77657 -14.53647 -14.11758 -13.71089 -13.49210 -13.33414 -13.06511 -12.90621 -12.81200 -12.48441 -12.25990 -12.08804 -11.91254 -11.75269 -11.56545 -11.27774 -10.97378 -10.87051 -10.31387 -9.99494 -9.39122 -9.05263 -8.72864 -8.47363 -8.41694 -7.85819 -6.15966 -4.22997 1.57908 2.44789 2.76034 3.24427 3.30347 3.32739 3.39338 3.73649 4.28602 4.39232 4.47462 4.73010 4.87083 4.98115 5.11212 5.19041 5.19968 5.24137 5.34899 5.44323 5.46967 5.55820 5.61582 5.62842 5.73917 5.81086 6.00553 6.14697 6.37146 6.79698 7.08868 7.31632 7.35274 7.45793 7.53459 7.67995 7.98047 8.64226 8.79474 9.12761 9.43707 10.94284 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040316 B = 0.003003 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.342654 B = 9322.896151 C = 9713.045248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.217 4.217 4 C -0.207 4.207 5 C -0.010 4.010 6 C 0.167 3.833 7 H 0.073 0.927 8 C -0.141 4.141 9 N -0.664 5.664 10 C 0.038 3.962 11 C 0.497 3.503 12 O -0.542 6.542 13 N -0.714 5.714 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.156 6.156 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.356 0.644 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 19.189 12.647 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.236 4.236 4 C -0.227 4.227 5 C -0.061 4.061 6 C 0.057 3.943 7 H 0.091 0.909 8 C -0.198 4.198 9 N -0.299 5.299 10 C -0.094 4.094 11 C 0.280 3.720 12 O -0.419 6.419 13 N -0.363 5.363 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.052 6.052 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.202 18.027 12.863 22.748 hybrid contribution 1.679 0.562 -0.982 2.024 sum -3.523 18.589 11.881 22.341 Atomic orbital electron populations 1.20305 0.85198 1.03936 1.03631 1.22525 0.94172 0.84329 1.05427 1.21513 0.92608 0.99295 1.10165 1.21536 0.98295 0.93612 1.09232 1.22405 0.83319 0.94003 1.06385 1.20123 0.90000 0.88236 0.95929 0.90913 1.21852 1.02998 1.01135 0.93860 1.60200 1.14828 1.30688 1.24141 1.21934 0.92394 0.96352 0.98746 1.20289 0.86240 0.84125 0.81311 1.90676 1.20231 1.68646 1.62383 1.46435 1.08161 1.33666 1.48083 1.19090 0.96796 0.82692 0.88439 1.21228 0.92211 1.15302 1.29413 0.91910 1.24963 0.96739 0.96453 0.95914 1.69978 1.24371 1.23860 1.34069 0.86411 0.82859 0.79339 0.78269 1.20445 1.21010 1.19771 1.84058 1.15945 1.34527 1.70641 0.90016 0.90414 0.89529 0.83643 0.83592 0.91348 0.91538 0.92192 0.82315 0.92599 0.88293 0.77784 0.95512 0.95614 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.01 0.38 -0.18 16 2 C -0.01 -0.15 7.32 -35.62 -0.26 -0.42 16 3 C -0.22 -2.26 10.81 -39.70 -0.43 -2.69 16 4 C -0.21 -2.26 10.80 -39.71 -0.43 -2.69 16 5 C -0.01 -0.13 5.81 -35.63 -0.21 -0.33 16 6 C 0.17 1.91 3.07 -68.86 -0.21 1.70 16 7 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 8 C -0.14 -1.45 9.40 37.16 0.35 -1.10 16 9 N -0.66 -9.69 5.92 -109.22 -0.65 -10.34 16 10 C 0.04 0.54 5.96 -4.98 -0.03 0.51 16 11 C 0.50 9.97 7.87 -10.99 -0.09 9.89 16 12 O -0.54 -13.36 16.20 5.56 0.09 -13.27 16 13 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 14 C 0.25 6.70 5.43 -5.20 -0.03 6.68 16 15 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 16 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 O -0.16 -2.16 10.64 5.72 0.06 -2.10 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.36 5.69 8.05 -39.29 -0.32 5.38 16 33 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 35 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -33.69 330.20 -7.11 -40.80 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.59 Total: 7.06 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.37 Total: -2.10 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.25 Total: -51.24 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.15 Total: -15.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.69 -7.11 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.311 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds