Wall clock time and date at job start Mon Mar 30 2020 04:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34516 * 125.78754 * 2 1 4 4 C 1.41376 * 106.84089 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.84242 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.79319 * 179.73499 * 5 4 3 7 7 H 1.08998 * 109.47371 * 340.00083 * 6 5 4 8 8 C 1.53002 * 109.47388 * 100.00077 * 6 5 4 9 9 N 1.46904 * 109.47587 * 219.99981 * 6 5 4 10 10 C 1.46894 * 111.00241 * 154.99933 * 9 6 5 11 11 C 1.50700 * 109.47163 * 180.02562 * 10 9 6 12 12 O 1.21278 * 119.99825 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99848 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99763 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00205 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00526 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99787 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00445 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46881 * 90.00269 * 19 17 15 21 21 H 1.48496 * 109.47146 * 209.99789 * 19 17 15 22 22 H 1.48495 * 109.46878 * 330.00297 * 19 17 15 23 23 O 1.34298 * 125.79175 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47056 * 89.99861 * 1 2 3 25 25 H 1.09000 * 109.46884 * 209.99804 * 1 2 3 26 26 H 1.09003 * 109.47129 * 329.99652 * 1 2 3 27 27 H 1.08004 * 126.58023 * 0.02562 * 3 2 1 28 28 H 1.07995 * 126.58211 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47318 * 59.99489 * 8 6 5 30 30 H 1.08994 * 109.47797 * 180.02562 * 8 6 5 31 31 H 1.09008 * 109.46694 * 300.00358 * 8 6 5 32 32 H 1.00900 * 110.99178 * 31.04532 * 9 6 5 33 33 H 1.09005 * 109.47076 * 299.99976 * 10 9 6 34 34 H 1.08998 * 109.47210 * 60.00235 * 10 9 6 35 35 H 0.97000 * 120.00503 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47491 * 300.00153 * 14 13 11 37 37 H 1.09005 * 109.47185 * 60.00407 * 14 13 11 38 38 H 0.96992 * 120.00289 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6322 -0.0006 5 6 3.5815 -0.7121 -0.0015 6 6 4.7706 -1.6377 -0.0081 7 1 5.6488 -1.0986 -0.3633 8 6 5.0261 -2.1499 1.4109 9 7 4.5011 -2.7750 -0.8980 10 6 5.7521 -3.3577 -1.4012 11 6 5.4362 -4.5185 -2.3089 12 8 4.2824 -4.8293 -2.5165 13 7 6.4357 -5.2104 -2.8907 14 6 6.1286 -6.3392 -3.7727 15 6 7.4119 -6.9361 -4.2900 16 1 8.3614 -6.5170 -3.9914 17 6 7.3741 -8.0181 -5.1438 18 7 6.2178 -8.5290 -5.5071 19 14 8.9649 -8.7585 -5.7845 20 1 9.4247 -9.8226 -4.8563 21 1 8.7325 -9.3421 -7.1301 22 1 10.0019 -7.6996 -5.8764 23 8 2.2925 -1.0894 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9666 2.1205 0.0004 28 1 4.5212 1.2434 -0.0004 29 1 4.1479 -2.6890 1.7662 30 1 5.8865 -2.8191 1.4063 31 1 5.2261 -1.3060 2.0712 32 1 3.8969 -2.5033 -1.6590 33 1 6.3068 -2.6022 -1.9578 34 1 6.3542 -3.7058 -0.5620 35 1 7.3585 -4.9611 -2.7256 36 1 5.5744 -7.0949 -3.2161 37 1 5.5260 -5.9912 -4.6117 38 1 6.1911 -9.2899 -6.1080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037979139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:50 Heat of formation + Delta-G solvation = -55.960074 kcal Electronic energy + Delta-G solvation = -19333.239719 eV Core-core repulsion = 16175.994996 eV Total energy + Delta-G solvation = -3157.244723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.55554 -40.54847 -37.71516 -36.09962 -34.35066 -34.10634 -33.18102 -31.36830 -29.60154 -27.62697 -26.78246 -24.43330 -22.76241 -22.70261 -21.39382 -20.90359 -19.19119 -18.10979 -17.27369 -17.09865 -17.07954 -16.73915 -16.28037 -15.84935 -15.43816 -15.01728 -14.60413 -14.25906 -14.09540 -13.94881 -13.88868 -13.70012 -13.68552 -13.33354 -13.04771 -12.94409 -12.80585 -12.70325 -12.51139 -12.22619 -12.19567 -11.48697 -10.83055 -10.80347 -10.74511 -9.83753 -9.49831 -9.23243 -8.29055 -6.45946 0.73818 1.43314 1.45983 1.57143 1.65444 1.78199 1.99588 2.28252 2.48244 3.05811 3.18448 3.58108 3.94379 3.99097 4.12325 4.23182 4.26214 4.38603 4.45039 4.56799 4.69201 4.78138 4.82149 4.85720 4.96914 5.04522 5.11529 5.23911 5.25602 5.33890 5.48835 5.62102 5.69025 5.84561 5.88880 6.09665 6.33822 6.65597 6.93930 7.23750 7.52331 8.83333 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040316 B = 0.003003 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.342654 B = 9322.896151 C = 9713.045248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.204 4.204 5 C -0.036 4.036 6 C 0.169 3.831 7 H 0.101 0.899 8 C -0.137 4.137 9 N -0.686 5.686 10 C 0.055 3.945 11 C 0.491 3.509 12 O -0.595 6.595 13 N -0.707 5.707 14 C 0.267 3.733 15 C -0.555 4.555 16 H 0.086 0.914 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.254 1.254 23 O -0.189 6.189 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.344 0.656 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.410 0.590 36 H -0.016 1.016 37 H -0.015 1.015 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 21.112 13.455 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.242 4.242 4 C -0.224 4.224 5 C -0.086 4.086 6 C 0.060 3.940 7 H 0.119 0.881 8 C -0.195 4.195 9 N -0.320 5.320 10 C -0.076 4.076 11 C 0.278 3.722 12 O -0.476 6.476 13 N -0.358 5.358 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.104 0.896 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.177 1.177 23 O -0.086 6.086 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.188 0.812 28 H 0.188 0.812 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.246 0.754 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.690 19.999 13.716 24.399 hybrid contribution 0.806 0.024 -1.195 1.442 sum -1.883 20.023 12.521 23.691 Atomic orbital electron populations 1.20466 0.83211 1.05048 1.04341 1.23265 0.95612 0.84149 1.05268 1.21895 0.92457 1.00247 1.09557 1.21898 0.99378 0.93241 1.07850 1.22711 0.83160 0.94893 1.07849 1.20266 0.90736 0.87387 0.95580 0.88108 1.21846 1.02239 1.01831 0.93590 1.60198 1.14976 1.32698 1.24106 1.21874 0.92877 0.94300 0.98571 1.21430 0.85010 0.84833 0.80877 1.90653 1.22531 1.70271 1.64102 1.46149 1.09725 1.32450 1.47462 1.18514 0.96184 0.83440 0.87493 1.21632 0.92826 1.15487 1.29325 0.89592 1.26107 1.00737 0.96924 0.96030 1.70148 1.27408 1.24604 1.34974 0.85135 0.77974 0.78700 0.77272 1.19602 1.21056 1.17740 1.84037 1.17001 1.36131 1.71434 0.89422 0.90730 0.86971 0.81247 0.81244 0.93755 0.90531 0.90235 0.83714 0.89008 0.85357 0.75415 0.99759 0.99658 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.24 0.74 -0.33 16 2 C -0.03 -0.72 7.32 24.84 0.18 -0.54 16 3 C -0.22 -4.28 10.81 22.19 0.24 -4.04 16 4 C -0.20 -4.04 10.80 22.19 0.24 -3.80 16 5 C -0.04 -0.86 5.81 24.83 0.14 -0.71 16 6 C 0.17 3.54 3.07 44.17 0.14 3.68 16 7 H 0.10 1.54 7.79 -2.39 -0.02 1.52 16 8 C -0.14 -2.58 9.40 71.98 0.68 -1.90 16 9 N -0.69 -19.47 5.92 -499.47 -2.96 -22.43 16 10 C 0.06 1.44 5.96 85.56 0.51 1.95 16 11 C 0.49 19.82 7.87 87.66 0.69 20.51 16 12 O -0.59 -30.63 16.20 -3.02 -0.05 -30.68 16 13 N -0.71 -29.73 5.55 -466.79 -2.59 -32.32 16 14 C 0.27 14.84 5.43 85.63 0.46 15.30 16 15 C -0.55 -30.26 9.28 25.60 0.24 -30.03 16 16 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 19 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 23 O -0.19 -5.31 10.64 -2.45 -0.03 -5.33 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.26 7.45 -2.39 -0.02 1.24 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.34 11.15 8.05 -89.69 -0.72 10.43 16 33 H 0.09 1.81 8.06 -2.38 -0.02 1.79 16 34 H 0.13 2.65 7.44 -2.39 -0.02 2.64 16 35 H 0.41 13.78 8.32 -92.71 -0.77 13.01 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.41 330.20 0.99 -76.42 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.42 Total: 25.96 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.72 Total: 0.63 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -5.26 Total: -111.39 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.08 Total: -36.01 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -77.41 0.99 -76.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.459 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds