Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.78866 * 2 1 4 4 C 1.41381 * 106.84004 * 179.74956 * 3 2 1 5 5 C 1.34517 * 106.84074 * 0.37274 * 4 3 2 6 6 C 1.50697 * 125.79291 * 179.88609 * 5 4 3 7 7 H 1.08998 * 109.46862 * 19.72333 * 6 5 4 8 8 C 1.52997 * 109.47466 * 259.71778 * 6 5 4 9 9 N 1.46906 * 109.47180 * 139.71312 * 6 5 4 10 10 C 1.46897 * 111.00172 * 205.00376 * 9 6 5 11 11 C 1.50697 * 109.46908 * 180.02562 * 10 9 6 12 12 O 1.21282 * 120.00108 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99985 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.46648 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00511 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99532 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99556 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47267 * 90.00398 * 19 17 15 21 21 H 1.48505 * 109.46774 * 209.99933 * 19 17 15 22 22 H 1.48498 * 109.47352 * 329.99690 * 19 17 15 23 23 O 1.34304 * 125.78461 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46903 * 300.00261 * 1 2 3 26 26 H 1.08993 * 109.47190 * 59.99654 * 1 2 3 27 27 H 1.07997 * 126.58418 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.58726 * 180.23659 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 8 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 8 6 5 31 31 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 32 32 H 1.00896 * 110.99793 * 328.95900 * 9 6 5 33 33 H 1.09005 * 109.47066 * 299.99968 * 10 9 6 34 34 H 1.09001 * 109.47085 * 59.99954 * 10 9 6 35 35 H 0.97005 * 119.99644 * 359.97438 * 13 11 10 36 36 H 1.08996 * 109.47217 * 299.99749 * 14 13 11 37 37 H 1.08998 * 109.46970 * 59.99991 * 14 13 11 38 38 H 0.96997 * 119.99893 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0059 5 6 3.5814 -0.7122 0.0008 6 6 4.7705 -1.6379 0.0018 7 1 5.6501 -1.0990 0.3538 8 6 5.0201 -2.1492 -1.4185 9 7 4.5047 -2.7757 0.8922 10 6 5.7577 -3.3588 1.3899 11 6 5.4455 -4.5208 2.2973 12 8 4.2926 -4.8322 2.5089 13 7 6.4474 -5.2133 2.8745 14 6 6.1439 -6.3425 3.7570 15 6 7.4295 -6.9407 4.2674 16 1 8.3777 -6.5215 3.9651 17 6 7.3950 -8.0228 5.1214 18 7 6.2403 -8.5331 5.4899 19 14 8.9885 -8.7638 5.7547 20 1 9.3778 -8.0926 7.0208 21 1 8.7950 -10.2151 6.0031 22 1 10.0593 -8.5732 4.7436 23 8 2.2924 -1.0895 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9666 2.1204 0.0004 28 1 4.5213 1.2432 0.0111 29 1 5.2174 -1.3050 -2.0792 30 1 4.1404 -2.6882 -1.7704 31 1 5.8805 -2.8185 -1.4178 32 1 3.9037 -2.5044 1.6559 33 1 6.3564 -3.7064 0.5479 34 1 6.3148 -2.6036 1.9445 35 1 7.3695 -4.9640 2.7055 36 1 5.5450 -5.9950 4.5987 37 1 5.5872 -7.0978 3.2022 38 1 6.2161 -9.2945 6.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037979140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -30.504131 kcal Electronic energy + Delta-G solvation = -19331.590801 eV Core-core repulsion = 16175.449931 eV Total energy + Delta-G solvation = -3156.140871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71209 -38.91109 -36.61802 -34.14081 -33.27669 -32.40938 -32.19296 -30.45839 -27.79268 -26.69833 -25.48168 -22.60173 -21.86166 -21.73174 -20.07761 -19.68295 -17.70061 -16.56474 -16.32865 -15.70550 -15.51861 -15.43478 -14.77684 -14.53747 -14.12300 -13.71336 -13.48267 -13.31413 -13.09491 -12.90449 -12.81385 -12.48174 -12.25373 -12.08833 -11.91341 -11.75466 -11.56691 -11.27816 -10.97216 -10.87212 -10.31321 -9.99185 -9.39115 -9.05230 -8.72901 -8.47469 -8.41520 -7.85801 -6.15990 -4.22986 1.57801 2.44571 2.76539 3.24330 3.30354 3.32824 3.39325 3.73676 4.28609 4.39288 4.47465 4.74006 4.87065 4.98975 5.11292 5.18849 5.19975 5.22558 5.34908 5.44301 5.46817 5.56105 5.61640 5.62976 5.73907 5.81250 6.00803 6.14725 6.37222 6.79732 7.08975 7.31674 7.35326 7.45854 7.53495 7.68006 7.98016 8.64224 8.79482 9.12764 9.43700 10.94254 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040384 B = 0.003001 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.183472 B = 9327.072293 C = 9715.834883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.217 4.217 4 C -0.207 4.207 5 C -0.010 4.010 6 C 0.167 3.833 7 H 0.073 0.927 8 C -0.141 4.141 9 N -0.665 5.665 10 C 0.038 3.962 11 C 0.497 3.503 12 O -0.542 6.542 13 N -0.714 5.714 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.156 6.156 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.356 0.644 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.390 0.610 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 19.192 -12.623 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.236 4.236 4 C -0.226 4.226 5 C -0.061 4.061 6 C 0.057 3.943 7 H 0.091 0.909 8 C -0.198 4.198 9 N -0.299 5.299 10 C -0.094 4.094 11 C 0.280 3.720 12 O -0.419 6.419 13 N -0.363 5.363 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 O -0.052 6.052 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.258 18.023 -12.841 22.745 hybrid contribution 1.683 0.576 0.988 2.034 sum -3.575 18.599 -11.853 22.343 Atomic orbital electron populations 1.20308 0.85209 1.04263 1.03342 1.22521 0.94173 0.84318 1.05438 1.21497 0.92609 0.99331 1.10172 1.21541 0.98288 0.93606 1.09214 1.22404 0.83327 0.94011 1.06399 1.20122 0.90012 0.88227 0.95921 0.90914 1.21851 1.03019 1.01137 0.93838 1.60200 1.14935 1.30665 1.24065 1.21935 0.92360 0.96336 0.98797 1.20292 0.86223 0.84140 0.81311 1.90677 1.20333 1.68683 1.62246 1.46438 1.08132 1.33628 1.48151 1.19091 0.96814 0.82676 0.88433 1.21230 0.92191 1.15278 1.29463 0.91906 1.24963 0.96751 0.96447 0.95906 1.69977 1.24462 1.23930 1.33898 0.86412 0.82900 0.78390 0.79181 1.20485 1.20993 1.19749 1.84070 1.15953 1.34533 1.70597 0.90351 0.89731 0.89814 0.83639 0.83595 0.92192 0.91347 0.91537 0.82315 0.88298 0.92592 0.77784 0.95621 0.95507 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.01 0.38 -0.19 16 2 C -0.01 -0.15 7.32 -35.62 -0.26 -0.42 16 3 C -0.22 -2.27 10.81 -39.71 -0.43 -2.70 16 4 C -0.21 -2.25 10.80 -39.70 -0.43 -2.68 16 5 C -0.01 -0.13 5.81 -35.63 -0.21 -0.34 16 6 C 0.17 1.91 3.07 -68.86 -0.21 1.70 16 7 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 8 C -0.14 -1.45 9.40 37.16 0.35 -1.10 16 9 N -0.66 -9.69 5.92 -109.22 -0.65 -10.34 16 10 C 0.04 0.54 5.96 -4.98 -0.03 0.51 16 11 C 0.50 9.97 7.87 -10.98 -0.09 9.89 16 12 O -0.54 -13.36 16.20 5.56 0.09 -13.27 16 13 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 14 C 0.25 6.70 5.43 -5.19 -0.03 6.68 16 15 C -0.54 -14.80 9.28 -34.43 -0.32 -15.11 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 O -0.16 -2.16 10.64 5.69 0.06 -2.10 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 32 H 0.36 5.69 8.05 -39.29 -0.32 5.37 16 33 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 34 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -33.68 330.20 -7.11 -40.79 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.59 Total: 7.07 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.37 Total: -2.11 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.25 Total: -51.23 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.15 Total: -15.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.68 -7.11 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.290 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds