Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.78866 * 2 1 4 4 C 1.41381 * 106.84004 * 179.74956 * 3 2 1 5 5 C 1.34517 * 106.84074 * 0.37274 * 4 3 2 6 6 C 1.50697 * 125.79291 * 179.88609 * 5 4 3 7 7 H 1.08998 * 109.46862 * 19.72333 * 6 5 4 8 8 C 1.52997 * 109.47466 * 259.71778 * 6 5 4 9 9 N 1.46906 * 109.47180 * 139.71312 * 6 5 4 10 10 C 1.46897 * 111.00172 * 205.00376 * 9 6 5 11 11 C 1.50697 * 109.46908 * 180.02562 * 10 9 6 12 12 O 1.21282 * 120.00108 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99985 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.46648 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00511 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99532 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99556 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47267 * 90.00398 * 19 17 15 21 21 H 1.48505 * 109.46774 * 209.99933 * 19 17 15 22 22 H 1.48498 * 109.47352 * 329.99690 * 19 17 15 23 23 O 1.34304 * 125.78461 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46903 * 300.00261 * 1 2 3 26 26 H 1.08993 * 109.47190 * 59.99654 * 1 2 3 27 27 H 1.07997 * 126.58418 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.58726 * 180.23659 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 8 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 8 6 5 31 31 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 32 32 H 1.00896 * 110.99793 * 328.95900 * 9 6 5 33 33 H 1.09005 * 109.47066 * 299.99968 * 10 9 6 34 34 H 1.09001 * 109.47085 * 59.99954 * 10 9 6 35 35 H 0.97005 * 119.99644 * 359.97438 * 13 11 10 36 36 H 1.08996 * 109.47217 * 299.99749 * 14 13 11 37 37 H 1.08998 * 109.46970 * 59.99991 * 14 13 11 38 38 H 0.96997 * 119.99893 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0059 5 6 3.5814 -0.7122 0.0008 6 6 4.7705 -1.6379 0.0018 7 1 5.6501 -1.0990 0.3538 8 6 5.0201 -2.1492 -1.4185 9 7 4.5047 -2.7757 0.8922 10 6 5.7577 -3.3588 1.3899 11 6 5.4455 -4.5208 2.2973 12 8 4.2926 -4.8322 2.5089 13 7 6.4474 -5.2133 2.8745 14 6 6.1439 -6.3425 3.7570 15 6 7.4295 -6.9407 4.2674 16 1 8.3777 -6.5215 3.9651 17 6 7.3950 -8.0228 5.1214 18 7 6.2403 -8.5331 5.4899 19 14 8.9885 -8.7638 5.7547 20 1 9.3778 -8.0926 7.0208 21 1 8.7950 -10.2151 6.0031 22 1 10.0593 -8.5732 4.7436 23 8 2.2924 -1.0895 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9666 2.1204 0.0004 28 1 4.5213 1.2432 0.0111 29 1 5.2174 -1.3050 -2.0792 30 1 4.1404 -2.6882 -1.7704 31 1 5.8805 -2.8185 -1.4178 32 1 3.9037 -2.5044 1.6559 33 1 6.3564 -3.7064 0.5479 34 1 6.3148 -2.6036 1.9445 35 1 7.3695 -4.9640 2.7055 36 1 5.5450 -5.9950 4.5987 37 1 5.5872 -7.0978 3.2022 38 1 6.2161 -9.2945 6.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037979140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -55.968369 kcal Electronic energy + Delta-G solvation = -19332.695013 eV Core-core repulsion = 16175.449931 eV Total energy + Delta-G solvation = -3157.245083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.55415 -40.54707 -37.71446 -36.09895 -34.35065 -34.10334 -33.17980 -31.36950 -29.60114 -27.62837 -26.78268 -24.43281 -22.76220 -22.69910 -21.39313 -20.90304 -19.19049 -18.10904 -17.27106 -17.09728 -17.07737 -16.73839 -16.27969 -15.84868 -15.44076 -15.02125 -14.60390 -14.24997 -14.09563 -13.95208 -13.88277 -13.70471 -13.68377 -13.33245 -13.04454 -12.94465 -12.80755 -12.70985 -12.51883 -12.22764 -12.19684 -11.48698 -10.82770 -10.80357 -10.74437 -9.83708 -9.49766 -9.22811 -8.29068 -6.45924 0.73912 1.43298 1.45934 1.57188 1.65303 1.78198 1.99918 2.28268 2.48258 3.05824 3.18485 3.58229 3.94413 3.99276 4.12159 4.23420 4.26330 4.38644 4.45035 4.54821 4.70935 4.78021 4.82257 4.86052 4.96664 5.04538 5.11560 5.23959 5.25822 5.33935 5.48886 5.62124 5.69063 5.84547 5.88914 6.09778 6.33932 6.65617 6.93926 7.23748 7.52345 8.83313 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040384 B = 0.003001 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.183472 B = 9327.072293 C = 9715.834883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.032 4.032 3 C -0.223 4.223 4 C -0.204 4.204 5 C -0.036 4.036 6 C 0.169 3.831 7 H 0.101 0.899 8 C -0.137 4.137 9 N -0.686 5.686 10 C 0.055 3.945 11 C 0.491 3.509 12 O -0.595 6.595 13 N -0.707 5.707 14 C 0.267 3.733 15 C -0.555 4.555 16 H 0.086 0.914 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.986 3.014 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.254 1.254 23 O -0.189 6.189 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.344 0.656 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.410 0.590 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 21.104 -13.449 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.242 4.242 4 C -0.223 4.223 5 C -0.087 4.087 6 C 0.060 3.940 7 H 0.119 0.881 8 C -0.195 4.195 9 N -0.320 5.320 10 C -0.076 4.076 11 C 0.278 3.722 12 O -0.476 6.476 13 N -0.358 5.358 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.104 0.896 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.178 1.178 23 O -0.086 6.086 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.187 0.813 28 H 0.187 0.813 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.246 0.754 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.757 19.985 -13.711 24.392 hybrid contribution 0.812 0.044 1.208 1.456 sum -1.946 20.029 -12.504 23.691 Atomic orbital electron populations 1.20467 0.83206 1.04328 1.05083 1.23263 0.95617 0.84137 1.05225 1.21869 0.92459 1.00264 1.09641 1.21900 0.99365 0.93237 1.07824 1.22708 0.83167 0.94895 1.07891 1.20265 0.90754 0.87376 0.95566 0.88109 1.21845 1.02255 1.01833 0.93573 1.60197 1.15085 1.32676 1.24028 1.21875 0.92851 0.94279 0.98619 1.21433 0.84988 0.84854 0.80875 1.90654 1.22628 1.70306 1.63972 1.46152 1.09700 1.32410 1.47528 1.18515 0.96202 0.83429 0.87484 1.21635 0.92803 1.15457 1.29386 0.89590 1.26107 1.00765 0.96925 0.95998 1.70147 1.27498 1.24661 1.34814 0.85136 0.78020 0.77007 0.78923 1.19576 1.21068 1.17753 1.84050 1.17007 1.36121 1.71398 0.91123 0.88220 0.87704 0.81285 0.81254 0.90240 0.93754 0.90530 0.83712 0.85368 0.88994 0.75416 0.99667 0.99749 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.24 0.74 -0.32 16 2 C -0.03 -0.71 7.32 24.83 0.18 -0.53 16 3 C -0.22 -4.30 10.81 22.19 0.24 -4.06 16 4 C -0.20 -4.04 10.80 22.19 0.24 -3.80 16 5 C -0.04 -0.87 5.81 24.83 0.14 -0.72 16 6 C 0.17 3.54 3.07 44.17 0.14 3.68 16 7 H 0.10 1.54 7.79 -2.39 -0.02 1.52 16 8 C -0.14 -2.58 9.40 71.98 0.68 -1.91 16 9 N -0.69 -19.47 5.92 -499.47 -2.96 -22.43 16 10 C 0.06 1.44 5.96 85.56 0.51 1.95 16 11 C 0.49 19.82 7.87 87.66 0.69 20.51 16 12 O -0.59 -30.63 16.20 -3.04 -0.05 -30.68 16 13 N -0.71 -29.73 5.55 -466.79 -2.59 -32.32 16 14 C 0.27 14.84 5.43 85.64 0.46 15.31 16 15 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 16 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 19 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 23 O -0.19 -5.30 10.64 -2.55 -0.03 -5.32 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.26 7.45 -2.38 -0.02 1.24 16 32 H 0.34 11.15 8.05 -89.70 -0.72 10.43 16 33 H 0.13 2.65 7.44 -2.38 -0.02 2.64 16 34 H 0.09 1.81 8.06 -2.39 -0.02 1.79 16 35 H 0.41 13.78 8.32 -92.70 -0.77 13.01 16 36 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.39 330.20 0.99 -76.40 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.42 Total: 25.99 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.72 Total: 0.62 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -5.26 Total: -111.39 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.08 Total: -36.01 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -77.39 0.99 -76.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.435 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds