Wall clock time and date at job start Mon Mar 30 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31010 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48503 * 109.47332 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.46745 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47384 * 149.99788 * 3 2 1 7 7 C 1.39598 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00116 * 179.97438 * 9 7 2 11 11 O 1.21507 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.48822 * 120.00250 * 179.97438 * 10 9 7 13 13 O 1.21441 * 120.00330 * 0.02562 * 12 10 9 14 14 N 1.34781 * 120.00036 * 180.02562 * 12 10 9 15 15 C 1.46501 * 119.99865 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.29445 * 117.95895 * 94.73163 * 17 16 15 19 19 C 1.50074 * 124.07477 * 180.75080 * 18 17 16 20 20 C 1.53016 * 110.14671 * 342.87319 * 19 18 17 21 21 C 1.53391 * 108.44058 * 49.43435 * 20 19 18 22 22 C 1.50066 * 117.96583 * 275.00149 * 17 16 15 23 23 H 0.96996 * 119.99893 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00050 * 0.02562 * 9 7 2 25 25 H 0.96999 * 119.99835 * 359.97438 * 14 12 10 26 26 H 1.08992 * 109.47403 * 59.99682 * 15 14 12 27 27 H 1.09006 * 109.47120 * 299.99358 * 15 14 12 28 28 H 1.08999 * 109.47122 * 59.99342 * 16 15 14 29 29 H 1.08997 * 109.46865 * 299.99588 * 16 15 14 30 30 H 1.07999 * 117.96176 * 0.73020 * 18 17 16 31 31 H 1.09002 * 109.35609 * 222.66402 * 19 18 17 32 32 H 1.09003 * 109.35439 * 103.08085 * 19 18 17 33 33 H 1.09003 * 109.64533 * 289.75036 * 20 19 18 34 34 H 1.09000 * 109.64519 * 169.11862 * 20 19 18 35 35 H 1.09001 * 109.64689 * 172.88318 * 21 20 19 36 36 H 1.09003 * 109.64136 * 52.25083 * 21 20 19 37 37 H 1.09003 * 109.35468 * 282.79297 * 22 17 16 38 38 H 1.08998 * 109.35916 * 42.51411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7001 6 1 3.5417 1.4401 0.7001 7 6 2.0080 -1.2090 0.0005 8 1 3.0881 -1.2090 0.0001 9 7 1.3274 -2.3878 0.0005 10 6 2.0012 -3.5550 0.0005 11 8 3.2163 -3.5550 0.0010 12 6 1.2571 -4.8438 0.0011 13 8 0.0427 -4.8438 0.0011 14 7 1.9309 -6.0110 0.0016 15 6 1.1984 -7.2797 0.0016 16 6 2.1926 -8.4427 0.0029 17 6 1.4391 -9.7478 0.0036 18 6 1.2178 -10.3214 -1.1356 19 6 0.4692 -11.6122 -1.2957 20 6 0.3889 -12.3446 0.0454 21 6 -0.0998 -11.3548 1.1104 22 6 0.9866 -10.2985 1.3242 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 -0.0002 25 1 2.9009 -6.0110 0.0013 26 1 0.5720 -7.3377 -0.8885 27 1 0.5714 -7.3373 0.8915 28 1 2.8187 -8.3845 0.8933 29 1 2.8199 -8.3854 -0.8866 30 1 1.5952 -9.8410 -2.0262 31 1 0.9852 -12.2415 -2.0208 32 1 -0.5387 -11.4031 -1.6542 33 1 1.3756 -12.7189 0.3182 34 1 -0.3128 -13.1752 -0.0322 35 1 -0.2851 -11.8840 2.0451 36 1 -1.0168 -10.8736 0.7702 37 1 1.8353 -10.7516 1.8365 38 1 0.5859 -9.4894 1.9348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040453897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:15 Heat of formation + Delta-G solvation = -85.440373 kcal Electronic energy + Delta-G solvation = -19324.964786 eV Core-core repulsion = 16166.441702 eV Total energy + Delta-G solvation = -3158.523085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56383 -38.90459 -37.21184 -35.25078 -34.19529 -32.55923 -31.37563 -30.96351 -28.47514 -25.86702 -24.10547 -23.31274 -22.12880 -21.32054 -19.44813 -18.32743 -17.71042 -16.94822 -16.16689 -15.51954 -15.37358 -14.91788 -14.58140 -14.32941 -14.28241 -13.94800 -13.87421 -13.24393 -12.88187 -12.75727 -12.60275 -12.35964 -12.22994 -11.84407 -11.76415 -11.27997 -11.17968 -11.02328 -10.65710 -10.54602 -10.45682 -10.39820 -10.28813 -9.71531 -8.94360 -8.72048 -8.25990 -8.22106 -6.66634 -3.98934 2.05027 2.46378 3.15357 3.16317 3.21895 3.46556 4.06702 4.29428 4.45799 4.50726 4.67833 4.92937 4.99169 5.03989 5.16280 5.18312 5.20432 5.23453 5.36160 5.38891 5.54401 5.62008 5.68088 5.74479 5.81536 5.91619 5.99771 6.01380 6.08885 6.12942 6.49221 6.79512 6.86297 7.31431 7.69942 7.88985 8.33701 8.63833 8.96769 9.32537 9.85769 10.48330 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.056022 B = 0.002934 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.687625 B = 9539.853215 C = 9709.902946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.499 5.499 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.547 6.547 14 N -0.716 5.716 15 C 0.127 3.873 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.155 4.155 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.085 4.085 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -20.228 0.262 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.297 3.703 13 O -0.424 6.424 14 N -0.371 5.371 15 C 0.003 3.997 16 C -0.138 4.138 17 C -0.115 4.115 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.122 4.122 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.245 0.755 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.272 -20.070 0.267 20.074 hybrid contribution 0.228 0.819 -0.079 0.854 sum 0.501 -19.251 0.187 19.259 Atomic orbital electron populations 1.69483 1.06530 1.29358 1.45336 1.25595 0.95631 1.00485 0.95919 0.85718 0.79370 0.79660 0.78786 1.19892 1.20511 1.18895 1.19885 0.93976 0.81888 1.47916 0.86975 1.41565 1.10503 1.04239 1.57041 1.18964 0.87813 0.84238 0.91140 1.90577 1.12894 1.86654 1.58594 1.20685 0.87501 0.85922 0.76209 1.90688 1.14085 1.88145 1.49464 1.45689 1.11121 1.04731 1.75531 1.21251 0.94361 0.81668 1.02399 1.20959 0.97580 0.91790 1.03468 1.20666 0.99837 0.95832 0.95190 1.21958 1.00714 0.97388 0.97283 1.20426 1.00068 0.94520 0.97603 1.21605 1.01372 0.97756 0.95072 1.21611 0.98554 0.96774 0.98899 1.20420 0.98506 0.98423 0.94846 0.90912 0.75990 0.75490 0.91610 0.91592 0.90502 0.90615 0.87790 0.91274 0.90930 0.91839 0.91887 0.91725 0.91590 0.90895 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.47 13.03 55.53 0.72 -22.74 16 2 C 0.03 0.80 5.51 -17.39 -0.10 0.70 16 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.31 -8.51 9.68 -15.14 -0.15 -8.65 16 8 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 9 N -0.50 -13.54 5.25 -11.59 -0.06 -13.60 16 10 C 0.39 10.07 7.81 -11.88 -0.09 9.98 16 11 O -0.60 -16.18 16.03 5.36 0.09 -16.10 16 12 C 0.51 11.37 7.87 -11.88 -0.09 11.28 16 13 O -0.55 -13.13 16.47 5.42 0.09 -13.04 16 14 N -0.72 -12.43 5.55 -60.93 -0.34 -12.77 16 15 C 0.13 1.79 5.66 -4.04 -0.02 1.76 16 16 C -0.10 -1.07 5.34 -27.88 -0.15 -1.22 16 17 C -0.11 -1.13 5.09 -100.94 -0.51 -1.65 16 18 C -0.16 -1.47 9.37 -35.90 -0.34 -1.81 16 19 C -0.09 -0.71 6.11 -28.18 -0.17 -0.88 16 20 C -0.12 -0.88 6.01 -26.52 -0.16 -1.04 16 21 C -0.12 -0.96 6.01 -26.52 -0.16 -1.12 16 22 C -0.09 -0.75 5.80 -28.18 -0.16 -0.91 16 23 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 24 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 25 H 0.41 6.62 7.93 -40.82 -0.32 6.30 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.96 8.11 -51.93 -0.42 0.53 16 28 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 29 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16 30 H 0.10 0.97 7.74 -52.49 -0.41 0.57 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -30.81 323.16 -7.35 -38.15 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.59 Total: 13.62 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.10 Total: 6.45 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.32 Total: -49.11 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.18 Total: -29.13 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.81 -7.35 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040453897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.287 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds