Wall clock time and date at job start Mon Mar 30 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31010 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48503 * 109.47332 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.46745 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47384 * 149.99788 * 3 2 1 7 7 C 1.39598 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00116 * 179.97438 * 9 7 2 11 11 O 1.21507 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.48822 * 120.00250 * 179.97438 * 10 9 7 13 13 O 1.21441 * 120.00330 * 0.02562 * 12 10 9 14 14 N 1.34781 * 120.00036 * 180.02562 * 12 10 9 15 15 C 1.46501 * 119.99865 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.29445 * 117.95895 * 94.73163 * 17 16 15 19 19 C 1.50074 * 124.07477 * 180.75080 * 18 17 16 20 20 C 1.53016 * 110.14671 * 342.87319 * 19 18 17 21 21 C 1.53391 * 108.44058 * 49.43435 * 20 19 18 22 22 C 1.50066 * 117.96583 * 275.00149 * 17 16 15 23 23 H 0.96996 * 119.99893 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00050 * 0.02562 * 9 7 2 25 25 H 0.96999 * 119.99835 * 359.97438 * 14 12 10 26 26 H 1.08992 * 109.47403 * 59.99682 * 15 14 12 27 27 H 1.09006 * 109.47120 * 299.99358 * 15 14 12 28 28 H 1.08999 * 109.47122 * 59.99342 * 16 15 14 29 29 H 1.08997 * 109.46865 * 299.99588 * 16 15 14 30 30 H 1.07999 * 117.96176 * 0.73020 * 18 17 16 31 31 H 1.09002 * 109.35609 * 222.66402 * 19 18 17 32 32 H 1.09003 * 109.35439 * 103.08085 * 19 18 17 33 33 H 1.09003 * 109.64533 * 289.75036 * 20 19 18 34 34 H 1.09000 * 109.64519 * 169.11862 * 20 19 18 35 35 H 1.09001 * 109.64689 * 172.88318 * 21 20 19 36 36 H 1.09003 * 109.64136 * 52.25083 * 21 20 19 37 37 H 1.09003 * 109.35468 * 282.79297 * 22 17 16 38 38 H 1.08998 * 109.35916 * 42.51411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7001 6 1 3.5417 1.4401 0.7001 7 6 2.0080 -1.2090 0.0005 8 1 3.0881 -1.2090 0.0001 9 7 1.3274 -2.3878 0.0005 10 6 2.0012 -3.5550 0.0005 11 8 3.2163 -3.5550 0.0010 12 6 1.2571 -4.8438 0.0011 13 8 0.0427 -4.8438 0.0011 14 7 1.9309 -6.0110 0.0016 15 6 1.1984 -7.2797 0.0016 16 6 2.1926 -8.4427 0.0029 17 6 1.4391 -9.7478 0.0036 18 6 1.2178 -10.3214 -1.1356 19 6 0.4692 -11.6122 -1.2957 20 6 0.3889 -12.3446 0.0454 21 6 -0.0998 -11.3548 1.1104 22 6 0.9866 -10.2985 1.3242 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 -0.0002 25 1 2.9009 -6.0110 0.0013 26 1 0.5720 -7.3377 -0.8885 27 1 0.5714 -7.3373 0.8915 28 1 2.8187 -8.3845 0.8933 29 1 2.8199 -8.3854 -0.8866 30 1 1.5952 -9.8410 -2.0262 31 1 0.9852 -12.2415 -2.0208 32 1 -0.5387 -11.4031 -1.6542 33 1 1.3756 -12.7189 0.3182 34 1 -0.3128 -13.1752 -0.0322 35 1 -0.2851 -11.8840 2.0451 36 1 -1.0168 -10.8736 0.7702 37 1 1.8353 -10.7516 1.8365 38 1 0.5859 -9.4894 1.9348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040453897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:15 Heat of formation + Delta-G solvation = -106.000515 kcal Electronic energy + Delta-G solvation = -19325.856341 eV Core-core repulsion = 16166.441702 eV Total energy + Delta-G solvation = -3159.414639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31502 -39.77653 -39.08375 -36.74665 -36.05570 -33.73712 -33.34716 -31.62071 -29.58985 -27.77506 -25.41616 -24.14185 -23.48047 -22.17649 -21.19888 -20.37613 -18.79887 -18.43399 -17.69051 -16.92296 -16.85410 -16.38501 -15.95561 -15.72952 -15.67902 -15.20119 -14.71470 -14.64283 -14.49164 -13.87446 -13.68182 -13.52880 -13.36847 -12.97528 -12.94949 -12.74776 -12.58730 -12.31726 -12.23216 -12.10455 -11.67334 -11.63298 -11.29196 -11.05271 -10.29642 -10.27117 -10.23329 -9.66279 -8.66959 -6.11996 0.58313 1.25904 1.41362 1.47022 1.56255 1.86227 2.29586 2.36028 3.14384 3.26719 3.76270 3.82140 3.98694 4.04753 4.09719 4.12409 4.36983 4.42359 4.50002 4.59764 4.72078 4.75825 4.87389 5.00135 5.05468 5.07846 5.13660 5.21139 5.24314 5.28837 5.36346 5.49025 5.66821 5.77400 6.11842 6.15131 6.37839 6.80202 7.00453 7.26592 7.78484 8.48993 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.056022 B = 0.002934 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.687625 B = 9539.853215 C = 9709.902946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.517 3.483 13 O -0.568 6.568 14 N -0.694 5.694 15 C 0.127 3.873 16 C -0.090 4.090 17 C -0.126 4.126 18 C -0.155 4.155 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.087 4.087 23 H 0.289 0.711 24 H 0.401 0.599 25 H 0.417 0.583 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -21.057 0.257 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.506 6.506 12 C 0.300 3.700 13 O -0.447 6.447 14 N -0.347 5.347 15 C 0.004 3.996 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.173 4.173 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.124 4.124 23 H 0.099 0.901 24 H 0.235 0.765 25 H 0.254 0.746 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.755 -20.944 0.260 20.959 hybrid contribution 0.071 0.956 -0.100 0.964 sum 0.826 -19.988 0.160 20.005 Atomic orbital electron populations 1.69550 1.07872 1.30867 1.45091 1.26572 0.96515 1.03545 0.94338 0.84682 0.78004 0.74927 0.79226 1.18908 1.19087 1.18724 1.19996 0.93715 0.83044 1.50785 0.88255 1.41665 1.10254 1.04835 1.57708 1.19594 0.87865 0.85211 0.89902 1.90543 1.13749 1.87281 1.59071 1.20104 0.87010 0.86040 0.76858 1.90680 1.14673 1.88363 1.51033 1.45661 1.11594 1.04495 1.72931 1.21475 0.95087 0.80974 1.02067 1.20889 0.96863 0.90674 1.04349 1.20698 1.00501 0.95573 0.95917 1.22171 1.00124 0.97953 0.97100 1.20489 0.99986 0.94013 0.98388 1.21606 1.01816 0.97821 0.94354 1.21623 0.97822 0.96733 0.99715 1.20450 0.99111 0.98543 0.94249 0.90057 0.76488 0.74573 0.92080 0.91738 0.89533 0.89876 0.87873 0.90132 0.90828 0.91610 0.90676 0.90626 0.92471 0.90021 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.53 13.03 21.77 0.28 -48.24 16 2 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 3 Si 1.01 40.87 29.56 68.60 2.03 42.90 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.35 -19.60 9.68 84.36 0.82 -18.79 16 8 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 9 N -0.51 -28.42 5.25 -308.87 -1.62 -30.04 16 10 C 0.39 20.24 7.81 87.08 0.68 20.92 16 11 O -0.62 -33.73 16.03 -3.74 -0.06 -33.79 16 12 C 0.52 23.03 7.87 87.08 0.68 23.71 16 13 O -0.57 -27.49 16.47 -3.53 -0.06 -27.55 16 14 N -0.69 -23.56 5.55 -465.00 -2.58 -26.14 16 15 C 0.13 3.43 5.66 86.38 0.49 3.92 16 16 C -0.09 -1.77 5.34 29.85 0.16 -1.61 16 17 C -0.13 -2.29 5.09 -15.10 -0.08 -2.37 16 18 C -0.16 -2.69 9.37 27.04 0.25 -2.43 16 19 C -0.09 -1.28 6.11 29.66 0.18 -1.10 16 20 C -0.12 -1.48 6.01 30.73 0.18 -1.30 16 21 C -0.12 -1.72 6.01 30.73 0.18 -1.53 16 22 C -0.09 -1.40 5.80 29.66 0.17 -1.22 16 23 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 24 H 0.40 22.55 7.35 -92.71 -0.68 21.87 16 25 H 0.42 13.04 7.93 -92.71 -0.74 12.30 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.81 8.11 -2.38 -0.02 1.79 16 28 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 29 H 0.08 1.52 7.80 -2.39 -0.02 1.51 16 30 H 0.10 1.77 7.74 -2.91 -0.02 1.75 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.80 8.12 -2.39 -0.02 0.79 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.90 8.12 -2.39 -0.02 0.89 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.16 8.11 -2.39 -0.02 1.15 16 Total: -1.00 -65.84 323.16 1.85 -63.99 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.34 Total: 40.50 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 4.20 Total: 18.38 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.92 Total: -104.43 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.12 Total: -61.34 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.84 1.85 -63.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040453897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.010 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds