Wall clock time and date at job start Mon Mar 30 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 N 1.46502 * 109.47290 * 180.02562 * 3 2 1 5 5 C 1.35944 * 125.66230 * 265.02700 * 4 3 2 6 6 C 1.35904 * 108.78859 * 179.97438 * 5 4 3 7 7 N 1.40730 * 126.11224 * 179.97438 * 6 5 4 8 8 C 1.40126 * 107.78082 * 359.74056 * 6 5 4 9 9 C 1.37635 * 125.66341 * 84.99694 * 4 3 2 10 10 C 1.46456 * 126.18236 * 0.02562 * 9 4 3 11 11 O 1.21633 * 120.00229 * 179.72119 * 10 9 4 12 12 O 1.34907 * 120.00010 * 0.02562 * 10 9 4 13 13 C 1.42893 * 117.00264 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47080 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00330 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00106 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00150 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47233 * 59.99722 * 19 17 15 21 21 H 1.48494 * 109.47303 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47008 * 300.00117 * 19 17 15 23 23 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 299.99870 * 1 2 3 25 25 H 1.08996 * 109.47109 * 60.00550 * 1 2 3 26 26 H 1.09010 * 109.47437 * 239.99708 * 2 1 3 27 27 H 1.09002 * 109.47530 * 120.00009 * 2 1 3 28 28 H 1.08993 * 109.47061 * 59.99696 * 3 2 1 29 29 H 1.09002 * 109.47103 * 299.99855 * 3 2 1 30 30 H 1.08002 * 125.60616 * 359.97438 * 5 4 3 31 31 H 0.97001 * 119.99985 * 0.02562 * 7 6 5 32 32 H 0.97007 * 120.00091 * 180.02562 * 7 6 5 33 33 H 1.08005 * 126.44288 * 180.29777 * 8 6 5 34 34 H 1.09006 * 109.47121 * 299.99415 * 13 12 10 35 35 H 1.08998 * 109.47344 * 59.99742 * 13 12 10 36 36 H 1.08994 * 109.47099 * 299.99671 * 14 13 12 37 37 H 1.08998 * 109.47020 * 59.99682 * 14 13 12 38 38 H 0.97005 * 120.00415 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2980 1.5381 1.0994 6 6 5.5983 1.5035 0.7059 7 7 6.7224 1.5771 1.5494 8 6 5.6199 1.3758 -0.6894 9 6 4.3069 1.3452 -1.1149 10 6 3.8500 1.2246 -2.5012 11 8 4.6611 1.1507 -3.4046 12 8 2.5296 1.2015 -2.7766 13 6 2.1554 1.0824 -4.1505 14 6 0.6297 1.0728 -4.2646 15 6 0.2351 0.9479 -5.7137 16 1 0.9964 0.8823 -6.4770 17 6 -1.0978 0.9173 -6.0650 18 7 -2.0248 0.9976 -5.1357 19 14 -1.5870 0.7617 -7.8611 20 1 -1.0407 -0.5032 -8.4151 21 1 -3.0677 0.7525 -7.9718 22 1 -1.0411 1.9128 -8.6243 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9516 1.6270 2.1185 31 1 6.6044 1.6608 2.5086 32 1 7.6153 1.5443 1.1717 33 1 6.4986 1.3150 -1.3145 34 1 2.5566 1.9269 -4.7109 35 1 2.5556 0.1536 -4.5569 36 1 0.2288 0.2282 -3.7044 37 1 0.2291 2.0014 -3.8581 38 1 -2.9626 0.9764 -5.3828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041102827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:50 Heat of formation + Delta-G solvation = -56.805349 kcal Electronic energy + Delta-G solvation = -20188.730735 eV Core-core repulsion = 17031.449358 eV Total energy + Delta-G solvation = -3157.281377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30399 -39.47737 -36.23629 -35.46063 -33.53215 -33.32777 -30.44779 -30.24060 -28.56037 -25.68015 -25.08655 -23.03752 -21.68234 -20.90760 -20.26846 -19.65877 -17.79828 -16.70542 -16.24088 -16.03453 -15.97540 -15.19118 -14.86806 -14.71244 -14.43436 -14.37583 -13.45970 -13.22015 -12.88151 -12.73538 -12.36671 -12.15138 -11.85506 -11.78722 -11.34398 -11.26864 -11.05346 -10.77165 -10.74087 -10.61869 -10.41629 -10.32832 -9.62680 -9.60451 -9.32744 -8.45384 -8.35683 -7.20282 -6.12004 -4.15675 1.43976 2.83657 2.91075 3.19765 3.29602 3.33543 3.38221 3.44947 4.14923 4.39166 4.80166 4.93008 5.01371 5.18771 5.24975 5.30194 5.42328 5.53746 5.68689 5.83451 5.95160 5.98347 6.10566 6.12000 6.14599 6.28222 6.46827 6.56789 6.64248 6.94951 6.98396 7.25827 7.53577 7.59943 7.67887 7.85582 7.95324 8.20437 8.30031 8.89250 9.48761 10.99370 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.004405 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.510604 B = 6355.431736 C = 7210.856939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.405 5.405 5 C -0.053 4.053 6 C 0.109 3.891 7 N -0.880 5.880 8 C -0.159 4.159 9 C -0.005 4.005 10 C 0.527 3.473 11 O -0.508 6.508 12 O -0.351 6.351 13 C 0.071 3.929 14 C 0.029 3.971 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.393 0.607 32 H 0.396 0.604 33 H 0.146 0.854 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 0.539 15.754 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.081 5.081 5 C -0.190 4.190 6 C 0.005 3.995 7 N -0.426 5.426 8 C -0.190 4.190 9 C -0.119 4.119 10 C 0.372 3.628 11 O -0.397 6.397 12 O -0.267 6.267 13 C -0.002 4.002 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.180 0.820 31 H 0.220 0.780 32 H 0.223 0.777 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.749 0.516 15.376 18.213 hybrid contribution 0.020 -0.089 -0.826 0.831 sum 9.769 0.427 14.550 17.530 Atomic orbital electron populations 1.21681 0.93966 1.02489 1.02599 1.21816 0.97174 0.95201 1.02799 1.22225 0.75203 0.99407 1.05157 1.43961 1.06504 1.52719 1.04895 1.21130 0.88926 1.17158 0.91819 1.16802 0.87306 1.05339 0.90074 1.41522 1.04594 1.89292 1.07205 1.20733 0.94688 1.10602 0.92995 1.19318 0.90064 1.17688 0.84810 1.19862 0.81847 0.73634 0.87470 1.90857 1.55421 1.46835 1.46546 1.86208 1.23907 1.82781 1.33806 1.23268 1.00185 1.00760 0.75952 1.19139 0.85382 0.98628 0.97655 1.20957 0.92103 1.51704 0.91704 0.92330 1.24955 0.96398 0.94868 0.97797 1.69947 1.00495 1.49710 1.32738 0.86550 0.77311 0.78863 0.84692 1.20065 1.21149 1.20071 0.92215 0.93015 0.90947 0.90726 0.92112 0.89328 0.87278 0.81977 0.78013 0.77672 0.83644 0.92526 0.92521 0.95387 0.95524 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.15 0.37 -1.49 16 2 C -0.13 -1.67 6.19 -26.73 -0.17 -1.83 16 3 C 0.10 1.26 5.40 -4.04 -0.02 1.24 16 4 N -0.41 -5.54 2.77 -112.66 -0.31 -5.86 16 5 C -0.05 -0.62 11.41 -16.57 -0.19 -0.81 16 6 C 0.11 1.32 7.27 -83.90 -0.61 0.71 16 7 N -0.88 -7.58 9.19 32.30 0.30 -7.28 16 8 C -0.16 -2.32 10.66 -38.94 -0.42 -2.73 16 9 C -0.01 -0.08 6.88 -82.02 -0.56 -0.65 16 10 C 0.53 10.10 7.90 34.04 0.27 10.37 16 11 O -0.51 -10.87 16.66 -19.37 -0.32 -11.19 16 12 O -0.35 -6.95 7.21 -41.06 -0.30 -7.24 16 13 C 0.07 1.58 5.31 37.16 0.20 1.78 16 14 C 0.03 0.74 5.34 -27.88 -0.15 0.59 16 15 C -0.53 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.13 7.76 -51.92 -0.40 0.73 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 29 H 0.11 1.59 6.45 -51.93 -0.33 1.26 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.39 2.51 8.96 -40.82 -0.37 2.15 16 32 H 0.40 2.90 8.96 -40.82 -0.37 2.53 16 33 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -31.24 328.35 -7.32 -38.56 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.66 Total: 2.99 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.69 Total: -6.12 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.72 Total: -38.19 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.62 Total: -18.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.24 -7.32 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041102827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.248 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds