Wall clock time and date at job start Mon Mar 30 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 N 1.46502 * 109.47290 * 180.02562 * 3 2 1 5 5 C 1.35944 * 125.66230 * 265.02700 * 4 3 2 6 6 C 1.35904 * 108.78859 * 179.97438 * 5 4 3 7 7 N 1.40730 * 126.11224 * 179.97438 * 6 5 4 8 8 C 1.40126 * 107.78082 * 359.74056 * 6 5 4 9 9 C 1.37635 * 125.66341 * 84.99694 * 4 3 2 10 10 C 1.46456 * 126.18236 * 0.02562 * 9 4 3 11 11 O 1.21633 * 120.00229 * 179.72119 * 10 9 4 12 12 O 1.34907 * 120.00010 * 0.02562 * 10 9 4 13 13 C 1.42893 * 117.00264 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47080 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00330 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00106 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00150 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47233 * 59.99722 * 19 17 15 21 21 H 1.48494 * 109.47303 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47008 * 300.00117 * 19 17 15 23 23 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 299.99870 * 1 2 3 25 25 H 1.08996 * 109.47109 * 60.00550 * 1 2 3 26 26 H 1.09010 * 109.47437 * 239.99708 * 2 1 3 27 27 H 1.09002 * 109.47530 * 120.00009 * 2 1 3 28 28 H 1.08993 * 109.47061 * 59.99696 * 3 2 1 29 29 H 1.09002 * 109.47103 * 299.99855 * 3 2 1 30 30 H 1.08002 * 125.60616 * 359.97438 * 5 4 3 31 31 H 0.97001 * 119.99985 * 0.02562 * 7 6 5 32 32 H 0.97007 * 120.00091 * 180.02562 * 7 6 5 33 33 H 1.08005 * 126.44288 * 180.29777 * 8 6 5 34 34 H 1.09006 * 109.47121 * 299.99415 * 13 12 10 35 35 H 1.08998 * 109.47344 * 59.99742 * 13 12 10 36 36 H 1.08994 * 109.47099 * 299.99671 * 14 13 12 37 37 H 1.08998 * 109.47020 * 59.99682 * 14 13 12 38 38 H 0.97005 * 120.00415 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2980 1.5381 1.0994 6 6 5.5983 1.5035 0.7059 7 7 6.7224 1.5771 1.5494 8 6 5.6199 1.3758 -0.6894 9 6 4.3069 1.3452 -1.1149 10 6 3.8500 1.2246 -2.5012 11 8 4.6611 1.1507 -3.4046 12 8 2.5296 1.2015 -2.7766 13 6 2.1554 1.0824 -4.1505 14 6 0.6297 1.0728 -4.2646 15 6 0.2351 0.9479 -5.7137 16 1 0.9964 0.8823 -6.4770 17 6 -1.0978 0.9173 -6.0650 18 7 -2.0248 0.9976 -5.1357 19 14 -1.5870 0.7617 -7.8611 20 1 -1.0407 -0.5032 -8.4151 21 1 -3.0677 0.7525 -7.9718 22 1 -1.0411 1.9128 -8.6243 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9516 1.6270 2.1185 31 1 6.6044 1.6608 2.5086 32 1 7.6153 1.5443 1.1717 33 1 6.4986 1.3150 -1.3145 34 1 2.5566 1.9269 -4.7109 35 1 2.5556 0.1536 -4.5569 36 1 0.2288 0.2282 -3.7044 37 1 0.2291 2.0014 -3.8581 38 1 -2.9626 0.9764 -5.3828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041102827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:49 Heat of formation + Delta-G solvation = -75.485876 kcal Electronic energy + Delta-G solvation = -20189.540783 eV Core-core repulsion = 17031.449358 eV Total energy + Delta-G solvation = -3158.091425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.44419 -40.98833 -37.83499 -36.48164 -35.43083 -34.43586 -32.38622 -31.35211 -29.70927 -27.19341 -26.53121 -24.49672 -22.94573 -22.60684 -21.29099 -20.98748 -19.08368 -18.44633 -17.78263 -17.66317 -17.14869 -16.55900 -16.21289 -15.92346 -15.81867 -15.34460 -14.92126 -14.57491 -14.44758 -14.31724 -13.86698 -13.20509 -13.17949 -13.06936 -12.86496 -12.73726 -12.61037 -12.60573 -12.33863 -12.02548 -11.70811 -11.55961 -11.44247 -11.41306 -11.33789 -10.60174 -9.48221 -8.26779 -8.07290 -6.39220 0.15773 1.40459 1.43698 1.51069 1.67945 1.79430 1.86748 2.19828 2.40103 3.07559 3.32099 3.71748 3.85682 3.96720 4.14648 4.20031 4.24215 4.33767 4.40149 4.48494 4.65082 4.68006 4.82987 4.86888 4.96037 5.10787 5.22632 5.24090 5.41794 5.47572 5.48369 5.56804 5.72971 5.87527 6.08208 6.27153 6.70423 6.74756 6.88295 7.30000 7.34866 8.85127 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.004405 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.510604 B = 6355.431736 C = 7210.856939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.100 3.900 4 N -0.403 5.403 5 C -0.029 4.029 6 C 0.106 3.894 7 N -0.868 5.868 8 C -0.161 4.161 9 C -0.049 4.049 10 C 0.525 3.475 11 O -0.541 6.541 12 O -0.348 6.348 13 C 0.087 3.913 14 C 0.041 3.959 15 C -0.554 4.554 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.268 1.268 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.206 0.794 31 H 0.407 0.593 32 H 0.403 0.597 33 H 0.144 0.856 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 0.706 17.716 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.021 4.021 4 N -0.079 5.079 5 C -0.167 4.167 6 C 0.001 3.999 7 N -0.416 5.416 8 C -0.193 4.193 9 C -0.161 4.161 10 C 0.373 3.627 11 O -0.432 6.432 12 O -0.265 6.265 13 C 0.014 3.986 14 C 0.004 3.996 15 C -0.591 4.591 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.192 1.192 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.146 0.854 29 H 0.099 0.901 30 H 0.222 0.778 31 H 0.237 0.763 32 H 0.231 0.769 33 H 0.162 0.838 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.241 0.684 17.367 20.173 hybrid contribution -0.064 -0.129 -1.252 1.260 sum 10.177 0.555 16.115 19.067 Atomic orbital electron populations 1.21634 0.93901 1.02480 1.02272 1.21739 0.97113 0.95269 1.02180 1.22289 0.74762 0.99295 1.05706 1.44079 1.06851 1.52182 1.04750 1.21865 0.88417 1.13710 0.92695 1.16887 0.88695 1.04973 0.89315 1.41497 1.03966 1.88484 1.07633 1.20902 0.93964 1.09955 0.94523 1.19045 0.91196 1.21985 0.83907 1.20402 0.80843 0.72667 0.88823 1.90820 1.55724 1.48878 1.47809 1.86221 1.25077 1.83134 1.32028 1.22801 0.98020 1.00358 0.77453 1.18900 0.87384 0.96715 0.96619 1.21340 0.92777 1.52314 0.92697 0.92113 1.25872 0.96237 0.94112 1.02604 1.70063 1.00947 1.50054 1.34999 0.85447 0.77223 0.79204 0.78869 1.19243 1.20300 1.19243 0.92123 0.90098 0.94391 0.94189 0.89746 0.85371 0.90117 0.77765 0.76317 0.76855 0.83842 0.92856 0.92918 0.97231 0.97400 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.91 71.98 0.71 -2.84 16 2 C -0.12 -3.07 6.19 30.59 0.19 -2.88 16 3 C 0.10 2.38 5.40 86.38 0.47 2.85 16 4 N -0.40 -10.37 2.77 -510.33 -1.41 -11.78 16 5 C -0.03 -0.56 11.41 83.51 0.95 0.39 16 6 C 0.11 2.27 7.27 37.63 0.27 2.54 16 7 N -0.87 -11.96 9.19 -51.73 -0.48 -12.44 16 8 C -0.16 -4.56 10.66 22.69 0.24 -4.32 16 9 C -0.05 -1.59 6.88 40.33 0.28 -1.31 16 10 C 0.52 21.04 7.90 69.96 0.55 21.59 16 11 O -0.54 -24.26 16.66 19.40 0.32 -23.94 16 12 O -0.35 -14.61 7.21 -58.22 -0.42 -15.03 16 13 C 0.09 4.09 5.31 71.98 0.38 4.47 16 14 C 0.04 2.19 5.34 29.85 0.16 2.35 16 15 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.01 0.63 5.46 84.66 0.46 1.10 16 18 N -0.92 -54.36 13.29 21.45 0.28 -54.08 16 19 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.25 7.76 -2.38 -0.02 1.23 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.13 2.04 8.12 -2.39 -0.02 2.02 16 29 H 0.08 2.42 6.45 -2.39 -0.02 2.41 16 30 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.41 3.50 8.96 -92.71 -0.83 2.67 16 32 H 0.40 4.74 8.96 -92.70 -0.83 3.91 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.05 2.50 8.13 -2.38 -0.02 2.48 16 35 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -69.62 328.35 4.64 -64.98 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.59 Total: 13.98 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.91 Total: -7.42 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.60 Total: -78.30 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.10 Total: -38.97 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.62 4.64 -64.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041102827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.509 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds