Wall clock time and date at job start Mon Mar 30 2020 04:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99945 * 2 1 4 4 O 1.20822 * 120.00175 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99719 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47081 * 300.00227 * 5 3 2 7 7 C 1.52999 * 109.46984 * 60.00559 * 5 3 2 8 8 C 1.50700 * 109.46863 * 180.02562 * 5 3 2 9 9 C 1.39872 * 126.03734 * 304.75480 * 8 5 3 10 10 C 1.50697 * 125.89934 * 0.26479 * 9 8 5 11 11 N 1.30838 * 108.20437 * 180.26463 * 9 8 5 12 12 N 1.40088 * 108.20403 * 0.02562 * 11 9 8 13 13 C 1.46497 * 126.03849 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46781 * 269.97215 * 13 12 11 15 15 H 1.07997 * 120.00320 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99381 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47062 * 90.00117 * 18 16 14 20 20 H 1.48502 * 109.47226 * 210.00125 * 18 16 14 21 21 H 1.48503 * 109.47183 * 329.99799 * 18 16 14 22 22 C 1.34948 * 107.92407 * 359.97438 * 12 11 9 23 23 C 1.50696 * 126.12923 * 180.02562 * 22 12 11 24 24 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47061 * 300.00108 * 1 2 3 26 26 H 1.08999 * 109.47124 * 59.99474 * 1 2 3 27 27 H 1.08997 * 109.47456 * 64.48771 * 7 5 3 28 28 H 1.08998 * 109.46795 * 184.49230 * 7 5 3 29 29 H 1.09006 * 109.46940 * 304.48627 * 7 5 3 30 30 H 1.09002 * 109.47097 * 95.54233 * 10 9 8 31 31 H 1.09004 * 109.47488 * 215.53915 * 10 9 8 32 32 H 1.08999 * 109.47627 * 335.54139 * 10 9 8 33 33 H 1.08995 * 109.47124 * 29.97190 * 13 12 11 34 34 H 1.08995 * 109.47028 * 149.97225 * 13 12 11 35 35 H 0.97005 * 119.99437 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.47516 * 269.97447 * 23 22 12 37 37 H 1.08999 * 109.47302 * 29.97647 * 23 22 12 38 38 H 1.09000 * 109.47645 * 149.97163 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5811 -1.2484 8 6 3.9937 2.7200 0.0011 9 6 3.6090 3.6922 -0.9281 10 6 2.6893 3.4773 -2.1024 11 7 4.1856 4.8204 -0.6017 12 7 4.9570 4.6014 0.5470 13 6 5.7662 5.6029 1.2457 14 6 7.1599 5.6115 0.6723 15 1 7.4172 4.9380 -0.1317 16 6 8.1069 6.4786 1.1750 17 7 7.7938 7.2977 2.1552 18 14 9.8345 6.4887 0.4649 19 1 9.9027 7.4586 -0.6574 20 1 10.8013 6.8843 1.5204 21 1 10.1732 5.1311 -0.0327 22 6 4.8222 3.3050 0.8969 23 6 5.4767 2.6298 2.0744 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.7893 1.1229 -2.1367 28 1 5.2030 0.5679 -1.2086 29 1 3.7393 -0.4417 -1.2895 30 1 1.6742 3.7622 -1.8258 31 1 3.0223 4.0883 -2.9414 32 1 2.7061 2.4259 -2.3895 33 1 5.3152 6.5871 1.1190 34 1 5.8113 5.3577 2.3067 35 1 8.4599 7.9079 2.5086 36 1 6.4415 2.2239 1.7704 37 1 5.6237 3.3558 2.8740 38 1 4.8385 1.8212 2.4306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050288197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:22 Heat of formation + Delta-G solvation = -26.357182 kcal Electronic energy + Delta-G solvation = -20679.888625 eV Core-core repulsion = 17523.927580 eV Total energy + Delta-G solvation = -3155.961045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95732 -39.94327 -36.39724 -34.53935 -33.50012 -32.49160 -30.36184 -28.92008 -27.75231 -26.39051 -25.89108 -24.20121 -22.56608 -20.86411 -18.85894 -18.73569 -17.20513 -16.71852 -16.56549 -16.17936 -15.27823 -14.62266 -14.25184 -14.23421 -13.66345 -13.30712 -13.03331 -12.92209 -12.56150 -12.38067 -12.35303 -12.22815 -11.96534 -11.88011 -11.64278 -11.47026 -11.15512 -11.03333 -10.92516 -10.76194 -10.69825 -10.27169 -10.06077 -9.73110 -9.59633 -8.64691 -8.15456 -7.54159 -6.26170 -4.33626 2.42870 2.61863 2.90354 3.21182 3.27460 3.30972 3.49950 3.62008 4.29324 4.88808 5.00499 5.05452 5.08810 5.12334 5.28913 5.31327 5.37482 5.44876 5.55406 5.72186 5.75108 5.93050 5.99291 6.01379 6.09268 6.18217 6.33040 6.40148 6.43988 6.55306 6.76041 7.03317 7.12273 7.50608 7.66128 7.88535 7.98070 8.05094 8.67579 8.76059 9.32641 10.81514 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034438 B = 0.004668 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.860413 B = 5997.047386 C = 6068.249537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.489 6.489 5 C 0.012 3.988 6 H 0.106 0.894 7 C -0.142 4.142 8 C -0.266 4.266 9 C 0.081 3.919 10 C -0.064 4.064 11 N -0.298 5.298 12 N -0.323 5.323 13 C 0.257 3.743 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.103 3.897 23 C -0.088 4.088 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -15.558 -2.945 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.374 6.374 5 C -0.008 4.008 6 H 0.124 0.876 7 C -0.199 4.199 8 C -0.278 4.278 9 C -0.084 4.084 10 C -0.122 4.122 11 N -0.122 5.122 12 N -0.102 5.102 13 C 0.139 3.861 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.030 4.030 23 C -0.147 4.147 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.420 -13.700 -3.037 16.901 hybrid contribution 0.656 -0.508 0.011 0.829 sum -8.764 -14.208 -3.026 16.966 Atomic orbital electron populations 1.23178 0.77191 1.03122 1.02376 1.86516 1.22773 1.34220 1.84705 1.24131 0.92365 0.81000 0.72484 1.90662 1.66869 1.36177 1.43697 1.19026 0.85939 0.94313 1.01544 0.87640 1.21858 1.02157 0.99611 0.96270 1.18707 1.11729 0.94716 1.02634 1.21747 0.98219 0.91003 0.97467 1.20136 0.97518 1.01061 0.93496 1.77302 1.11044 1.22242 1.01589 1.49219 1.33819 1.07600 1.19549 1.19671 0.88988 0.86068 0.91373 1.21300 0.94254 1.21888 1.19927 0.91760 1.24934 0.99426 0.94695 0.94746 1.69926 1.35268 1.22238 1.25522 0.86347 0.82849 0.78662 0.78772 1.20316 1.20886 1.19667 1.20669 0.98426 0.86408 0.97456 1.20389 1.00176 0.99807 0.94297 0.88555 0.92187 0.92137 0.91778 0.90970 0.91778 0.90819 0.91864 0.91935 0.92995 0.93065 0.92254 0.90178 0.90651 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.41 10.38 -39.27 -0.41 -4.82 16 3 C 0.46 6.68 6.55 36.01 0.24 6.91 16 4 O -0.49 -8.57 13.29 -18.75 -0.25 -8.82 16 5 C 0.01 0.17 2.95 -92.92 -0.27 -0.10 16 6 H 0.11 1.28 6.76 -51.93 -0.35 0.93 16 7 C -0.14 -1.67 9.04 37.16 0.34 -1.33 16 8 C -0.27 -4.94 4.44 -105.05 -0.47 -5.40 16 9 C 0.08 1.64 6.51 -82.41 -0.54 1.11 16 10 C -0.06 -1.05 8.74 36.00 0.31 -0.73 16 11 N -0.30 -7.19 12.58 33.67 0.42 -6.77 16 12 N -0.32 -7.75 3.60 -58.32 -0.21 -7.96 16 13 C 0.26 6.69 6.00 -5.19 -0.03 6.66 16 14 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 15 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 18 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.10 2.08 6.93 -82.27 -0.57 1.51 16 23 C -0.09 -1.43 9.78 36.00 0.35 -1.07 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.06 0.78 5.57 -51.93 -0.29 0.49 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 30 H 0.07 1.22 7.45 -51.93 -0.39 0.84 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.88 5.08 -51.93 -0.26 0.62 16 33 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.05 1.32 7.05 -51.93 -0.37 0.95 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.27 7.08 -51.93 -0.37 0.90 16 38 H 0.07 0.90 7.08 -51.93 -0.37 0.54 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -32.27 317.51 -5.25 -37.51 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.31 Total: -1.02 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 0.01 Total: -4.49 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.95 Total: -39.22 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.66 Total: -13.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.27 -5.25 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050288197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.156 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds