Wall clock time and date at job start Mon Mar 30 2020 04:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99945 * 2 1 4 4 O 1.20822 * 120.00175 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99719 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47081 * 300.00227 * 5 3 2 7 7 C 1.52999 * 109.46984 * 60.00559 * 5 3 2 8 8 C 1.50700 * 109.46863 * 180.02562 * 5 3 2 9 9 C 1.39872 * 126.03734 * 304.75480 * 8 5 3 10 10 C 1.50697 * 125.89934 * 0.26479 * 9 8 5 11 11 N 1.30838 * 108.20437 * 180.26463 * 9 8 5 12 12 N 1.40088 * 108.20403 * 0.02562 * 11 9 8 13 13 C 1.46497 * 126.03849 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46781 * 269.97215 * 13 12 11 15 15 H 1.07997 * 120.00320 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99381 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47062 * 90.00117 * 18 16 14 20 20 H 1.48502 * 109.47226 * 210.00125 * 18 16 14 21 21 H 1.48503 * 109.47183 * 329.99799 * 18 16 14 22 22 C 1.34948 * 107.92407 * 359.97438 * 12 11 9 23 23 C 1.50696 * 126.12923 * 180.02562 * 22 12 11 24 24 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47061 * 300.00108 * 1 2 3 26 26 H 1.08999 * 109.47124 * 59.99474 * 1 2 3 27 27 H 1.08997 * 109.47456 * 64.48771 * 7 5 3 28 28 H 1.08998 * 109.46795 * 184.49230 * 7 5 3 29 29 H 1.09006 * 109.46940 * 304.48627 * 7 5 3 30 30 H 1.09002 * 109.47097 * 95.54233 * 10 9 8 31 31 H 1.09004 * 109.47488 * 215.53915 * 10 9 8 32 32 H 1.08999 * 109.47627 * 335.54139 * 10 9 8 33 33 H 1.08995 * 109.47124 * 29.97190 * 13 12 11 34 34 H 1.08995 * 109.47028 * 149.97225 * 13 12 11 35 35 H 0.97005 * 119.99437 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.47516 * 269.97447 * 23 22 12 37 37 H 1.08999 * 109.47302 * 29.97647 * 23 22 12 38 38 H 1.09000 * 109.47645 * 149.97163 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5811 -1.2484 8 6 3.9937 2.7200 0.0011 9 6 3.6090 3.6922 -0.9281 10 6 2.6893 3.4773 -2.1024 11 7 4.1856 4.8204 -0.6017 12 7 4.9570 4.6014 0.5470 13 6 5.7662 5.6029 1.2457 14 6 7.1599 5.6115 0.6723 15 1 7.4172 4.9380 -0.1317 16 6 8.1069 6.4786 1.1750 17 7 7.7938 7.2977 2.1552 18 14 9.8345 6.4887 0.4649 19 1 9.9027 7.4586 -0.6574 20 1 10.8013 6.8843 1.5204 21 1 10.1732 5.1311 -0.0327 22 6 4.8222 3.3050 0.8969 23 6 5.4767 2.6298 2.0744 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.7893 1.1229 -2.1367 28 1 5.2030 0.5679 -1.2086 29 1 3.7393 -0.4417 -1.2895 30 1 1.6742 3.7622 -1.8258 31 1 3.0223 4.0883 -2.9414 32 1 2.7061 2.4259 -2.3895 33 1 5.3152 6.5871 1.1190 34 1 5.8113 5.3577 2.3067 35 1 8.4599 7.9079 2.5086 36 1 6.4415 2.2239 1.7704 37 1 5.6237 3.3558 2.8740 38 1 4.8385 1.8212 2.4306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050288197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:21 Heat of formation + Delta-G solvation = -46.373052 kcal Electronic energy + Delta-G solvation = -20680.756578 eV Core-core repulsion = 17523.927580 eV Total energy + Delta-G solvation = -3156.828999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.41392 -41.15900 -37.48195 -36.11849 -35.09765 -34.21586 -31.90571 -30.50117 -28.57497 -27.91147 -27.54482 -25.46633 -24.30161 -22.08976 -20.39839 -20.18318 -18.81242 -18.32563 -17.80741 -17.25431 -16.88812 -16.22486 -15.92275 -15.49811 -14.85774 -14.55436 -14.44959 -14.32995 -14.03461 -13.79930 -13.56040 -13.50247 -13.34557 -13.09774 -12.97961 -12.82349 -12.76483 -12.65405 -12.51595 -12.20947 -12.10981 -11.72416 -11.64647 -11.24190 -11.09508 -10.75466 -9.86127 -9.13846 -8.34683 -6.52613 1.13290 1.32434 1.37043 1.38528 1.49523 1.64114 1.90120 2.17394 2.34057 2.95370 3.70417 3.84237 3.89350 4.16678 4.24118 4.31100 4.39428 4.41698 4.46135 4.50630 4.65787 4.72887 4.76349 4.79006 4.88030 4.90596 4.94890 5.08189 5.10798 5.23539 5.40519 5.46710 5.49981 5.53813 5.79275 5.97380 6.29073 6.61340 6.91055 7.07154 7.18773 8.72130 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034438 B = 0.004668 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.860413 B = 5997.047386 C = 6068.249537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.526 6.526 5 C 0.010 3.990 6 H 0.132 0.868 7 C -0.137 4.137 8 C -0.257 4.257 9 C 0.077 3.923 10 C -0.058 4.058 11 N -0.355 5.355 12 N -0.354 5.354 13 C 0.274 3.726 14 C -0.551 4.551 15 H 0.052 0.948 16 C 0.020 3.980 17 N -0.921 5.921 18 Si 0.975 3.025 19 H -0.276 1.276 20 H -0.270 1.270 21 H -0.265 1.265 22 C 0.088 3.912 23 C -0.086 4.086 24 H 0.133 0.867 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.015 0.985 34 H 0.047 0.953 35 H 0.273 0.727 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -18.517 -3.428 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.414 6.414 5 C -0.010 4.010 6 H 0.150 0.850 7 C -0.194 4.194 8 C -0.269 4.269 9 C -0.088 4.088 10 C -0.116 4.116 11 N -0.179 5.179 12 N -0.133 5.133 13 C 0.155 3.845 14 C -0.589 4.589 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.559 5.559 18 Si 0.798 3.202 19 H -0.202 1.202 20 H -0.195 1.195 21 H -0.189 1.189 22 C -0.043 4.043 23 C -0.144 4.144 24 H 0.151 0.849 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.188 -16.708 -3.519 19.390 hybrid contribution 0.427 0.326 0.148 0.557 sum -8.761 -16.382 -3.371 18.881 Atomic orbital electron populations 1.23495 0.75351 1.05487 1.02163 1.86494 1.24450 1.32501 1.83991 1.24096 0.92401 0.81155 0.71539 1.90666 1.67649 1.37506 1.45613 1.19173 0.86137 0.91567 1.04082 0.85039 1.21848 1.02324 1.00748 0.94471 1.19169 1.10067 0.96740 1.00933 1.22473 0.97418 0.90561 0.98326 1.20220 0.96345 1.02869 0.92205 1.77212 1.13065 1.24754 1.02832 1.48992 1.35221 1.08654 1.20444 1.19161 0.88625 0.85299 0.91391 1.21423 0.95311 1.22238 1.19937 0.92982 1.25799 1.03457 0.93925 0.94858 1.70021 1.36793 1.22662 1.26426 0.85304 0.77855 0.78842 0.78181 1.20210 1.19489 1.18923 1.21483 0.98742 0.85236 0.98825 1.20533 1.01260 1.00227 0.92353 0.84893 0.92714 0.92163 0.92441 0.90680 0.88919 0.91057 0.91347 0.89315 0.96689 0.93493 0.91753 0.89121 0.92005 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.43 10.38 -51.47 -0.53 -7.96 16 3 C 0.46 12.36 6.55 71.24 0.47 12.83 16 4 O -0.53 -17.78 13.29 21.97 0.29 -17.49 16 5 C 0.01 0.26 2.95 -12.28 -0.04 0.23 16 6 H 0.13 2.66 6.76 -2.39 -0.02 2.64 16 7 C -0.14 -2.74 9.04 71.98 0.65 -2.09 16 8 C -0.26 -9.32 4.44 -20.14 -0.09 -9.41 16 9 C 0.08 3.17 6.51 43.10 0.28 3.45 16 10 C -0.06 -1.87 8.74 71.24 0.62 -1.25 16 11 N -0.36 -17.79 12.58 -47.38 -0.60 -18.38 16 12 N -0.35 -17.63 3.60 -338.42 -1.22 -18.85 16 13 C 0.27 15.08 6.00 85.63 0.51 15.59 16 14 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 16 C 0.02 1.13 5.46 84.66 0.46 1.59 16 17 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 18 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.09 3.55 6.93 41.40 0.29 3.84 16 23 C -0.09 -2.66 9.78 71.23 0.70 -1.97 16 24 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.92 8.13 -2.38 -0.02 0.90 16 26 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.06 1.22 5.57 -2.39 -0.01 1.21 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.36 8.01 -2.38 -0.02 1.34 16 30 H 0.07 2.35 7.45 -2.39 -0.02 2.33 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.34 5.08 -2.39 -0.01 2.33 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 2.56 7.05 -2.39 -0.02 2.54 16 35 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 36 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.06 2.08 7.08 -2.39 -0.02 2.06 16 38 H 0.11 2.48 7.08 -2.39 -0.02 2.46 16 Total: -1.00 -72.60 317.51 6.61 -65.99 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.06 Total: 10.90 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.29 Total: -6.73 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -1.53 Total: -90.05 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.24 Total: -25.46 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.60 6.61 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050288197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.614 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds