Wall clock time and date at job start Mon Mar 30 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.34224 * 126.29679 * 300.02853 * 4 2 1 6 6 H 0.97000 * 125.73812 * 359.95868 * 5 4 2 7 7 N 1.39924 * 108.51430 * 179.97438 * 5 4 2 8 8 C 1.30430 * 108.91891 * 359.97438 * 7 5 4 9 9 C 1.38124 * 126.29471 * 119.71125 * 4 2 1 10 10 C 1.47283 * 126.42816 * 0.02562 * 9 4 2 11 11 O 1.21518 * 120.00229 * 0.02562 * 10 9 4 12 12 O 1.34758 * 120.00079 * 179.97438 * 10 9 4 13 13 C 1.45196 * 117.00150 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47643 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47424 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00106 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47104 * 60.00175 * 20 18 16 22 22 H 1.48497 * 109.47028 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47171 * 299.99849 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08007 * 125.99471 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47220 * 299.99915 * 13 12 10 33 33 H 1.08997 * 109.47323 * 59.99533 * 13 12 10 34 34 H 1.09000 * 109.46774 * 300.00106 * 14 13 12 35 35 H 1.09007 * 109.46944 * 59.99876 * 14 13 12 36 36 H 1.09008 * 109.47271 * 300.00348 * 15 14 13 37 37 H 1.09007 * 109.46761 * 59.99566 * 15 14 13 38 38 H 0.96993 * 120.00019 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7869 -0.3641 2.5037 6 1 1.2523 0.3921 2.7922 7 7 2.4322 -1.2773 3.3449 8 6 3.0554 -2.1590 2.6130 9 6 2.8252 -1.8412 1.2552 10 6 3.3369 -2.5763 0.0860 11 8 3.0676 -2.1962 -1.0363 12 8 4.1047 -3.6699 0.2609 13 6 4.5743 -4.3440 -0.9364 14 6 5.4234 -5.5537 -0.5408 15 6 5.9176 -6.2644 -1.8023 16 6 6.7545 -7.4555 -1.4127 17 1 6.9172 -7.6832 -0.3696 18 6 7.3124 -8.2547 -2.3879 19 7 7.1139 -7.9778 -3.6582 20 14 8.3492 -9.7316 -1.9049 21 1 7.5283 -10.6702 -1.0983 22 1 8.8290 -10.4213 -3.1294 23 1 9.5139 -9.2780 -1.1032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.6419 -2.9883 2.9802 32 1 3.7193 -4.6774 -1.5246 33 1 5.1763 -3.6551 -1.5288 34 1 6.2783 -5.2207 0.0476 35 1 4.8208 -6.2425 0.0514 36 1 5.0624 -6.5974 -2.3905 37 1 6.5200 -5.5757 -2.3949 38 1 7.5068 -8.5398 -4.3442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061238637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:45 Heat of formation + Delta-G solvation = -45.762654 kcal Electronic energy + Delta-G solvation = -19476.819156 eV Core-core repulsion = 16320.016626 eV Total energy + Delta-G solvation = -3156.802530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79568 -39.65461 -36.44225 -35.71298 -33.92714 -31.98103 -31.49807 -30.08282 -27.59926 -27.09757 -24.41278 -22.98722 -22.38730 -21.36029 -20.36630 -19.72346 -17.96907 -16.65803 -16.21877 -16.15783 -15.64584 -15.23020 -15.12524 -14.72465 -14.45136 -13.81943 -13.76182 -13.41542 -13.16248 -12.66502 -12.16539 -12.05279 -12.03786 -11.69959 -11.64801 -11.64161 -10.92322 -10.90604 -10.63312 -10.57445 -10.30595 -10.16846 -9.99245 -9.66672 -9.46833 -9.14466 -9.02126 -8.35694 -6.00827 -4.03704 1.17684 1.93052 2.32390 3.08762 3.22831 3.34606 3.38772 3.41592 4.07010 4.42459 4.45591 4.58502 4.68618 4.91772 4.99174 5.13453 5.16932 5.34951 5.35075 5.36507 5.57564 5.65203 5.66173 5.70227 5.81286 5.93843 6.07440 6.15729 6.59786 6.61106 6.77005 6.92453 7.04378 7.22897 7.63645 7.75290 7.97726 8.08364 8.39337 9.02510 9.60396 11.10623 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003127 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.137909 B = 8953.218458 C = 9484.692190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.145 4.145 4 C 0.178 3.822 5 N -0.460 5.460 6 H 0.442 0.558 7 N -0.299 5.299 8 C 0.109 3.891 9 C -0.278 4.278 10 C 0.541 3.459 11 O -0.522 6.522 12 O -0.353 6.353 13 C 0.071 3.929 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 18.510 10.048 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.203 4.203 4 C 0.043 3.957 5 N -0.165 5.165 6 H 0.286 0.714 7 N -0.119 5.119 8 C -0.079 4.079 9 C -0.291 4.291 10 C 0.386 3.614 11 O -0.413 6.413 12 O -0.269 6.269 13 C -0.002 4.002 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.204 18.865 10.743 25.410 hybrid contribution 0.530 -0.754 -0.560 1.079 sum -12.674 18.111 10.183 24.338 Atomic orbital electron populations 1.21850 0.93305 1.02798 1.02336 1.20438 0.96478 0.96388 0.94644 1.21850 1.02014 0.94092 1.02339 1.21507 0.93352 0.93350 0.87453 1.46114 1.41513 1.25486 1.03381 0.71352 1.77230 1.14455 1.03348 1.16839 1.24281 0.95913 0.97365 0.90319 1.19192 1.14261 1.02447 0.93154 1.19870 0.75471 0.78697 0.87366 1.90735 1.57416 1.67406 1.25755 1.86531 1.61563 1.38919 1.39870 1.23483 0.98379 0.94395 0.83953 1.21763 0.97736 0.93353 1.01826 1.19045 0.96308 0.94870 0.91070 1.21147 1.31184 1.10746 0.92905 0.92467 1.25027 0.96554 0.97920 0.94951 1.69955 1.44926 1.39138 0.99404 0.86612 0.80655 0.82700 0.77769 1.20187 1.21295 1.20181 0.93014 0.91841 0.90982 0.85093 0.93014 0.91842 0.90984 0.78257 0.91520 0.91511 0.92129 0.92133 0.96235 0.96237 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.06 -0.53 3.24 -91.78 -0.30 -0.82 16 3 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16 4 C 0.18 1.88 5.80 -81.59 -0.47 1.41 16 5 N -0.46 -4.16 7.28 33.87 0.25 -3.92 16 6 H 0.44 2.50 8.96 -182.73 -1.64 0.86 16 7 N -0.30 -3.42 12.63 30.87 0.39 -3.03 16 8 C 0.11 1.30 11.87 -16.97 -0.20 1.10 16 9 C -0.28 -3.66 6.13 -105.08 -0.64 -4.30 16 10 C 0.54 8.65 7.95 34.41 0.27 8.92 16 11 O -0.52 -9.15 14.29 -19.28 -0.28 -9.42 16 12 O -0.35 -6.01 10.07 -40.65 -0.41 -6.42 16 13 C 0.07 1.32 5.48 37.16 0.20 1.52 16 14 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.13 1.51 5.55 -51.93 -0.29 1.22 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -32.45 328.63 -7.50 -39.95 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.96 Total: -3.61 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.94 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 1.37 Total: -33.12 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.68 Total: -15.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.45 -7.50 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061238637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.813 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds