Wall clock time and date at job start Mon Mar 30 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.34224 * 126.29679 * 300.02853 * 4 2 1 6 6 H 0.97000 * 125.73812 * 359.95868 * 5 4 2 7 7 N 1.39924 * 108.51430 * 179.97438 * 5 4 2 8 8 C 1.30430 * 108.91891 * 359.97438 * 7 5 4 9 9 C 1.38124 * 126.29471 * 119.71125 * 4 2 1 10 10 C 1.47283 * 126.42816 * 0.02562 * 9 4 2 11 11 O 1.21518 * 120.00229 * 0.02562 * 10 9 4 12 12 O 1.34758 * 120.00079 * 179.97438 * 10 9 4 13 13 C 1.45196 * 117.00150 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47446 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47643 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47424 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00106 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47104 * 60.00175 * 20 18 16 22 22 H 1.48497 * 109.47028 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47171 * 299.99849 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08007 * 125.99471 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47220 * 299.99915 * 13 12 10 33 33 H 1.08997 * 109.47323 * 59.99533 * 13 12 10 34 34 H 1.09000 * 109.46774 * 300.00106 * 14 13 12 35 35 H 1.09007 * 109.46944 * 59.99876 * 14 13 12 36 36 H 1.09008 * 109.47271 * 300.00348 * 15 14 13 37 37 H 1.09007 * 109.46761 * 59.99566 * 15 14 13 38 38 H 0.96993 * 120.00019 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7869 -0.3641 2.5037 6 1 1.2523 0.3921 2.7922 7 7 2.4322 -1.2773 3.3449 8 6 3.0554 -2.1590 2.6130 9 6 2.8252 -1.8412 1.2552 10 6 3.3369 -2.5763 0.0860 11 8 3.0676 -2.1962 -1.0363 12 8 4.1047 -3.6699 0.2609 13 6 4.5743 -4.3440 -0.9364 14 6 5.4234 -5.5537 -0.5408 15 6 5.9176 -6.2644 -1.8023 16 6 6.7545 -7.4555 -1.4127 17 1 6.9172 -7.6832 -0.3696 18 6 7.3124 -8.2547 -2.3879 19 7 7.1139 -7.9778 -3.6582 20 14 8.3492 -9.7316 -1.9049 21 1 7.5283 -10.6702 -1.0983 22 1 8.8290 -10.4213 -3.1294 23 1 9.5139 -9.2780 -1.1032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.6419 -2.9883 2.9802 32 1 3.7193 -4.6774 -1.5246 33 1 5.1763 -3.6551 -1.5288 34 1 6.2783 -5.2207 0.0476 35 1 4.8208 -6.2425 0.0514 36 1 5.0624 -6.5974 -2.3905 37 1 6.5200 -5.5757 -2.3949 38 1 7.5068 -8.5398 -4.3442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061238637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:45 Heat of formation + Delta-G solvation = -65.255723 kcal Electronic energy + Delta-G solvation = -19477.664439 eV Core-core repulsion = 16320.016626 eV Total energy + Delta-G solvation = -3157.647813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70288 -40.95501 -37.74355 -36.52967 -35.86119 -33.68930 -32.67018 -31.00017 -28.96154 -28.13073 -25.84072 -24.38539 -23.43527 -22.23795 -22.11074 -20.87435 -19.03043 -18.51123 -17.59496 -17.53654 -16.83289 -16.47883 -16.11893 -15.95090 -15.46634 -15.34515 -14.72605 -14.50796 -14.05895 -14.00676 -13.75053 -13.74566 -13.12997 -12.77847 -12.76192 -12.50547 -12.33048 -12.30997 -12.25619 -12.01501 -11.74759 -11.58864 -11.35482 -11.30958 -11.15802 -10.82392 -10.54368 -9.97385 -8.19521 -6.30906 0.22076 0.95176 1.42203 1.45224 1.46325 1.54291 1.90553 2.09673 2.43542 3.14260 3.33119 3.60128 3.73319 3.91384 4.05945 4.07467 4.12262 4.26809 4.38568 4.45056 4.51381 4.67610 4.84588 4.85455 4.85529 4.96598 5.10537 5.12948 5.22355 5.26475 5.27379 5.48979 5.60549 5.67592 5.82955 6.07252 6.21983 6.36392 6.79951 6.85571 7.38420 8.92545 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003127 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.137909 B = 8953.218458 C = 9484.692190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.142 4.142 4 C 0.195 3.805 5 N -0.441 5.441 6 H 0.459 0.541 7 N -0.309 5.309 8 C 0.109 3.891 9 C -0.311 4.311 10 C 0.538 3.462 11 O -0.544 6.544 12 O -0.353 6.353 13 C 0.081 3.919 14 C -0.094 4.094 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.214 0.786 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 19.345 11.824 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.200 4.200 4 C 0.058 3.942 5 N -0.147 5.147 6 H 0.307 0.693 7 N -0.128 5.128 8 C -0.079 4.079 9 C -0.323 4.323 10 C 0.385 3.615 11 O -0.436 6.436 12 O -0.269 6.269 13 C 0.008 3.992 14 C -0.131 4.131 15 C -0.011 4.011 16 C -0.582 4.582 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.807 19.732 12.562 27.162 hybrid contribution 0.638 -0.911 -1.111 1.572 sum -13.169 18.822 11.451 25.667 Atomic orbital electron populations 1.21853 0.91434 1.02443 1.04225 1.20462 0.97940 0.97128 0.92507 1.21853 1.01103 0.92777 1.04225 1.21725 0.91751 0.92259 0.88457 1.46090 1.40716 1.25368 1.02518 0.69262 1.77205 1.14749 1.03670 1.17221 1.24507 0.95903 0.97798 0.89692 1.19182 1.16548 1.03939 0.92668 1.20337 0.74839 0.78150 0.88128 1.90731 1.58256 1.67841 1.26799 1.86507 1.62108 1.39600 1.38662 1.23117 0.97915 0.93773 0.84430 1.21457 0.98345 0.93949 0.99377 1.18929 0.94985 0.94466 0.92718 1.21612 1.31531 1.11581 0.93462 0.91651 1.26004 0.97865 1.01200 0.94814 1.70093 1.46101 1.40570 1.00628 0.85455 0.78999 0.78692 0.77634 1.19062 1.20948 1.19044 0.90636 0.93308 0.89657 0.87995 0.90640 0.93287 0.89660 0.76989 0.91897 0.91883 0.91439 0.91448 0.98462 0.98465 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.18 71.98 0.66 -0.98 16 2 C -0.06 -0.99 3.24 -11.54 -0.04 -1.03 16 3 C -0.14 -1.64 9.18 71.98 0.66 -0.98 16 4 C 0.19 3.85 5.80 42.16 0.24 4.09 16 5 N -0.44 -6.95 7.28 -46.77 -0.34 -7.29 16 6 H 0.46 3.71 8.96 -213.43 -1.91 1.79 16 7 N -0.31 -6.49 12.63 -56.24 -0.71 -7.20 16 8 C 0.11 2.47 11.87 85.67 1.02 3.48 16 9 C -0.31 -8.02 6.13 -20.16 -0.12 -8.14 16 10 C 0.54 17.42 7.95 70.20 0.56 17.98 16 11 O -0.54 -19.57 14.29 19.78 0.28 -19.29 16 12 O -0.35 -12.07 10.07 -56.69 -0.57 -12.64 16 13 C 0.08 3.08 5.48 71.98 0.39 3.47 16 14 C -0.09 -3.93 5.53 30.59 0.17 -3.76 16 15 C 0.03 1.39 4.97 29.84 0.15 1.54 16 16 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 19 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 20 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.10 2.36 5.55 -2.39 -0.01 2.35 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 37 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -70.23 328.63 4.50 -65.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -0.86 Total: 5.94 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.39 Total: -14.64 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -0.77 Total: -71.30 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.29 Total: -31.93 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.23 4.50 -65.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061238637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.471 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds