Wall clock time and date at job start Mon Mar 30 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86805 * 119.99807 * 2 1 4 4 H 1.48507 * 109.46893 * 270.00064 * 3 2 1 5 5 H 1.48496 * 109.47231 * 29.99720 * 3 2 1 6 6 H 1.48492 * 109.47260 * 150.00059 * 3 2 1 7 7 C 1.39583 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36120 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99891 * 179.97438 * 9 7 2 11 11 O 1.21500 * 120.00398 * 359.97438 * 10 9 7 12 12 C 1.48833 * 119.99960 * 179.97438 * 10 9 7 13 13 O 1.21449 * 119.99580 * 355.55073 * 12 10 9 14 14 N 1.34772 * 120.00458 * 175.55007 * 12 10 9 15 15 C 1.46490 * 120.00365 * 185.68111 * 14 12 10 16 16 C 1.53007 * 109.47150 * 84.97414 * 15 14 12 17 17 C 1.52997 * 117.49948 * 243.74911 * 16 15 14 18 18 C 1.53007 * 117.49958 * 175.08797 * 16 15 14 19 19 C 1.46508 * 119.99560 * 5.68288 * 14 12 10 20 20 C 1.53000 * 109.46577 * 276.43211 * 19 14 12 21 21 C 1.53005 * 117.49564 * 243.74560 * 20 19 14 22 22 C 1.53004 * 117.49321 * 175.09156 * 20 19 14 23 23 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99532 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47363 * 324.97689 * 15 14 12 26 26 H 1.08996 * 109.47562 * 204.97282 * 15 14 12 27 27 H 1.08999 * 115.54912 * 29.41861 * 16 15 14 28 28 H 1.09003 * 117.49610 * 359.97438 * 17 16 15 29 29 H 1.09000 * 117.50101 * 145.01858 * 17 16 15 30 30 H 1.08996 * 117.49564 * 214.97989 * 18 16 15 31 31 H 1.09000 * 117.49519 * 359.97438 * 18 16 15 32 32 H 1.08991 * 109.47175 * 36.43186 * 19 14 12 33 33 H 1.09004 * 109.46618 * 156.43390 * 19 14 12 34 34 H 1.08996 * 115.55604 * 29.41998 * 20 19 14 35 35 H 1.08997 * 117.50037 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.49665 * 145.02974 * 21 20 19 37 37 H 1.09002 * 117.49611 * 214.98392 * 22 20 19 38 38 H 1.09001 * 117.50350 * 359.97132 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4915 2.0465 -1.4002 5 1 1.4415 2.6527 0.7000 6 1 3.5416 1.4403 0.7000 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0001 9 7 1.3275 -2.3877 0.0005 10 6 2.0015 -3.5548 0.0005 11 8 3.2165 -3.5548 0.0001 12 6 1.2574 -4.8438 0.0011 13 8 0.0457 -4.8453 0.0832 14 7 1.9281 -6.0092 -0.0894 15 6 1.1927 -7.2699 -0.2143 16 6 0.8537 -7.5191 -1.6854 17 6 -0.6257 -7.5487 -2.0743 18 6 0.1833 -8.8478 -2.0407 19 6 3.3930 -6.0152 -0.0629 20 6 3.9295 -5.7302 -1.4672 21 6 4.7390 -6.8336 -2.1515 22 6 5.4436 -5.5797 -1.6277 23 1 -0.4851 0.8400 -0.0004 24 1 0.3575 -2.3876 0.0005 25 1 0.2717 -7.2124 0.3660 26 1 1.8077 -8.0881 0.1604 27 1 1.5554 -7.1007 -2.4069 28 1 -1.3576 -7.3911 -1.2820 29 1 -0.8973 -7.1501 -3.0518 30 1 0.4437 -9.3032 -2.9961 31 1 -0.0159 -9.5445 -1.2265 32 1 3.7471 -5.2468 0.6242 33 1 3.7463 -6.9912 0.2699 34 1 3.2924 -5.1092 -2.0968 35 1 4.8889 -7.7626 -1.6015 36 1 4.6347 -6.9381 -3.2314 37 1 5.8026 -4.8598 -2.3632 38 1 6.0574 -5.6832 -0.7329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070505578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:27 Heat of formation + Delta-G solvation = -11.724809 kcal Electronic energy + Delta-G solvation = -20694.333971 eV Core-core repulsion = 17539.007433 eV Total energy + Delta-G solvation = -3155.326538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88470 -37.71274 -37.07262 -36.66866 -34.64362 -33.73495 -31.36579 -28.07133 -26.51911 -25.28417 -22.51112 -22.25624 -22.07256 -20.64908 -20.20780 -18.85307 -18.07135 -16.77573 -16.28804 -15.40171 -15.31445 -14.75362 -14.69729 -13.99201 -13.92360 -13.87100 -13.63384 -13.05345 -12.57287 -12.27795 -12.13872 -11.71816 -11.63815 -11.42477 -11.28755 -11.18593 -11.06121 -10.51285 -10.46721 -10.38865 -10.20472 -10.00645 -9.85994 -9.72081 -9.45169 -8.32742 -8.16737 -7.95922 -6.64467 -3.96536 2.47807 3.13831 3.16344 3.21052 3.29860 3.91609 4.05742 4.19083 4.29818 4.78744 4.83463 5.02854 5.06954 5.14421 5.20061 5.26220 5.43719 5.52846 5.55570 5.66156 5.67724 5.81391 5.85619 6.00356 6.03480 6.05122 6.19951 6.21412 6.30931 6.38372 6.41519 6.68749 7.00515 7.33380 7.69332 7.82450 8.35064 8.63456 8.99197 9.35592 9.88859 10.50586 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.005732 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.596841 B = 4883.541719 C = 5858.022849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.304 4.304 8 H 0.112 0.888 9 N -0.502 5.502 10 C 0.395 3.605 11 O -0.581 6.581 12 C 0.513 3.487 13 O -0.542 6.542 14 N -0.594 5.594 15 C 0.147 3.853 16 C -0.165 4.165 17 C -0.171 4.171 18 C -0.180 4.180 19 C 0.142 3.858 20 C -0.131 4.131 21 C -0.197 4.197 22 C -0.166 4.166 23 H 0.280 0.720 24 H 0.403 0.597 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 -13.160 -2.549 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.434 4.434 8 H 0.130 0.870 9 N -0.136 5.136 10 C 0.179 3.821 11 O -0.469 6.469 12 C 0.300 3.700 13 O -0.419 6.419 14 N -0.327 5.327 15 C 0.024 3.976 16 C -0.184 4.184 17 C -0.208 4.208 18 C -0.218 4.218 19 C 0.020 3.980 20 C -0.150 4.150 21 C -0.234 4.234 22 C -0.203 4.203 23 H 0.090 0.910 24 H 0.238 0.762 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.818 -13.003 -2.474 13.776 hybrid contribution -0.201 0.781 -0.264 0.849 sum 3.617 -12.222 -2.738 13.037 Atomic orbital electron populations 1.69482 1.06508 1.29240 1.45670 1.25560 0.95587 1.00398 0.96065 0.85751 0.79380 0.79877 0.78717 1.19995 1.20585 1.18936 1.19847 0.93897 0.81871 1.47833 0.87000 1.41572 1.10410 1.04214 1.57409 1.18963 0.87990 0.84247 0.90900 1.90534 1.12569 1.85887 1.57931 1.20767 0.87306 0.85822 0.76127 1.90675 1.14323 1.87697 1.49168 1.47647 1.07152 1.05358 1.72532 1.21002 0.97422 0.85355 0.93778 1.22776 0.96464 1.00791 0.98369 1.22987 0.94417 1.00362 1.03020 1.22927 1.05307 0.90889 1.02675 1.21567 0.78025 1.01927 0.96507 1.22503 0.94108 1.00396 0.98005 1.23101 1.06863 0.93401 1.00054 1.22762 0.95465 0.99354 1.02747 0.91009 0.76151 0.90150 0.90438 0.87577 0.88494 0.89225 0.89114 0.88974 0.86381 0.92156 0.88151 0.89398 0.89714 0.89275 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.36 13.03 55.53 0.72 -22.64 16 2 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 3 Si 0.94 20.04 29.56 -169.99 -5.02 15.01 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.30 -8.24 9.67 -15.15 -0.15 -8.39 16 8 H 0.11 3.08 7.15 -52.49 -0.38 2.71 16 9 N -0.50 -13.24 5.24 -11.59 -0.06 -13.30 16 10 C 0.39 9.64 7.65 -11.88 -0.09 9.55 16 11 O -0.58 -14.37 11.70 5.37 0.06 -14.31 16 12 C 0.51 11.15 7.63 -11.88 -0.09 11.06 16 13 O -0.54 -12.70 16.11 5.41 0.09 -12.61 16 14 N -0.59 -10.35 2.50 -174.43 -0.44 -10.78 16 15 C 0.15 2.11 5.73 -4.04 -0.02 2.09 16 16 C -0.16 -2.23 5.98 -90.61 -0.54 -2.78 16 17 C -0.17 -2.26 10.18 -26.69 -0.27 -2.53 16 18 C -0.18 -1.96 10.26 -26.69 -0.27 -2.23 16 19 C 0.14 2.27 5.31 -4.04 -0.02 2.25 16 20 C -0.13 -2.07 4.57 -90.62 -0.41 -2.48 16 21 C -0.20 -2.48 10.18 -26.69 -0.27 -2.75 16 22 C -0.17 -2.34 10.25 -26.69 -0.27 -2.61 16 23 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 24 H 0.40 10.88 7.36 -40.82 -0.30 10.58 16 25 H 0.08 1.23 7.24 -51.93 -0.38 0.85 16 26 H 0.08 0.90 7.78 -51.93 -0.40 0.49 16 27 H 0.11 1.55 8.13 -51.93 -0.42 1.13 16 28 H 0.10 1.34 8.03 -51.93 -0.42 0.93 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 2.20 5.74 -51.93 -0.30 1.90 16 33 H 0.06 0.78 7.51 -51.93 -0.39 0.39 16 34 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16 35 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -28.68 324.58 -7.76 -36.44 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.49 Total: 15.43 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.51 Total: 1.86 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.23 Total: -46.72 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: 0.15 Total: -26.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.68 -7.76 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070505578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.713 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds