Wall clock time and date at job start Mon Mar 30 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86805 * 119.99807 * 2 1 4 4 H 1.48507 * 109.46893 * 270.00064 * 3 2 1 5 5 H 1.48496 * 109.47231 * 29.99720 * 3 2 1 6 6 H 1.48492 * 109.47260 * 150.00059 * 3 2 1 7 7 C 1.39583 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36120 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99891 * 179.97438 * 9 7 2 11 11 O 1.21500 * 120.00398 * 359.97438 * 10 9 7 12 12 C 1.48833 * 119.99960 * 179.97438 * 10 9 7 13 13 O 1.21449 * 119.99580 * 355.55073 * 12 10 9 14 14 N 1.34772 * 120.00458 * 175.55007 * 12 10 9 15 15 C 1.46490 * 120.00365 * 185.68111 * 14 12 10 16 16 C 1.53007 * 109.47150 * 84.97414 * 15 14 12 17 17 C 1.52997 * 117.49948 * 243.74911 * 16 15 14 18 18 C 1.53007 * 117.49958 * 175.08797 * 16 15 14 19 19 C 1.46508 * 119.99560 * 5.68288 * 14 12 10 20 20 C 1.53000 * 109.46577 * 276.43211 * 19 14 12 21 21 C 1.53005 * 117.49564 * 243.74560 * 20 19 14 22 22 C 1.53004 * 117.49321 * 175.09156 * 20 19 14 23 23 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99532 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47363 * 324.97689 * 15 14 12 26 26 H 1.08996 * 109.47562 * 204.97282 * 15 14 12 27 27 H 1.08999 * 115.54912 * 29.41861 * 16 15 14 28 28 H 1.09003 * 117.49610 * 359.97438 * 17 16 15 29 29 H 1.09000 * 117.50101 * 145.01858 * 17 16 15 30 30 H 1.08996 * 117.49564 * 214.97989 * 18 16 15 31 31 H 1.09000 * 117.49519 * 359.97438 * 18 16 15 32 32 H 1.08991 * 109.47175 * 36.43186 * 19 14 12 33 33 H 1.09004 * 109.46618 * 156.43390 * 19 14 12 34 34 H 1.08996 * 115.55604 * 29.41998 * 20 19 14 35 35 H 1.08997 * 117.50037 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.49665 * 145.02974 * 21 20 19 37 37 H 1.09002 * 117.49611 * 214.98392 * 22 20 19 38 38 H 1.09001 * 117.50350 * 359.97132 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4915 2.0465 -1.4002 5 1 1.4415 2.6527 0.7000 6 1 3.5416 1.4403 0.7000 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0001 9 7 1.3275 -2.3877 0.0005 10 6 2.0015 -3.5548 0.0005 11 8 3.2165 -3.5548 0.0001 12 6 1.2574 -4.8438 0.0011 13 8 0.0457 -4.8453 0.0832 14 7 1.9281 -6.0092 -0.0894 15 6 1.1927 -7.2699 -0.2143 16 6 0.8537 -7.5191 -1.6854 17 6 -0.6257 -7.5487 -2.0743 18 6 0.1833 -8.8478 -2.0407 19 6 3.3930 -6.0152 -0.0629 20 6 3.9295 -5.7302 -1.4672 21 6 4.7390 -6.8336 -2.1515 22 6 5.4436 -5.5797 -1.6277 23 1 -0.4851 0.8400 -0.0004 24 1 0.3575 -2.3876 0.0005 25 1 0.2717 -7.2124 0.3660 26 1 1.8077 -8.0881 0.1604 27 1 1.5554 -7.1007 -2.4069 28 1 -1.3576 -7.3911 -1.2820 29 1 -0.8973 -7.1501 -3.0518 30 1 0.4437 -9.3032 -2.9961 31 1 -0.0159 -9.5445 -1.2265 32 1 3.7471 -5.2468 0.6242 33 1 3.7463 -6.9912 0.2699 34 1 3.2924 -5.1092 -2.0968 35 1 4.8889 -7.7626 -1.6015 36 1 4.6347 -6.9381 -3.2314 37 1 5.8026 -4.8598 -2.3632 38 1 6.0574 -5.6832 -0.7329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070505578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:27 Heat of formation + Delta-G solvation = -28.774452 kcal Electronic energy + Delta-G solvation = -20695.073299 eV Core-core repulsion = 17539.007433 eV Total energy + Delta-G solvation = -3156.065866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55377 -39.33707 -38.50726 -37.93113 -36.37847 -35.37355 -33.37492 -29.34087 -28.16391 -27.04335 -24.15726 -23.20132 -23.13493 -22.02917 -21.35267 -20.63691 -19.93651 -18.44828 -17.83602 -17.05390 -16.76739 -16.43677 -15.96650 -15.70671 -15.34899 -15.26516 -14.87715 -14.74221 -14.29420 -13.72582 -13.51160 -13.37369 -12.99270 -12.87859 -12.51802 -12.36266 -12.31492 -12.23813 -12.10908 -12.07278 -11.62757 -11.40425 -11.16165 -10.88874 -10.70020 -10.20617 -9.85454 -9.68935 -8.61526 -6.05398 0.66687 1.40530 1.46289 1.55284 1.76390 2.27983 2.41785 2.89098 3.02139 3.18005 3.20796 3.77408 3.94178 3.97863 4.03660 4.10722 4.16038 4.23618 4.35707 4.42777 4.59247 4.69308 4.80555 4.84977 4.87653 4.97495 5.03311 5.10758 5.26215 5.28432 5.30568 5.33917 5.37831 5.62604 5.74804 6.15298 6.38772 6.83051 7.03889 7.34974 7.87286 8.54832 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.005732 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.596841 B = 4883.541719 C = 5858.022849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.008 4.008 3 Si 1.007 2.993 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.339 4.339 8 H 0.099 0.901 9 N -0.521 5.521 10 C 0.394 3.606 11 O -0.585 6.585 12 C 0.513 3.487 13 O -0.566 6.566 14 N -0.578 5.578 15 C 0.144 3.856 16 C -0.180 4.180 17 C -0.194 4.194 18 C -0.141 4.141 19 C 0.143 3.857 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.173 4.173 23 H 0.286 0.714 24 H 0.396 0.604 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -15.375 -2.787 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.211 4.211 3 Si 0.829 3.171 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.117 0.883 9 N -0.155 5.155 10 C 0.179 3.821 11 O -0.473 6.473 12 C 0.297 3.703 13 O -0.445 6.445 14 N -0.309 5.309 15 C 0.023 3.977 16 C -0.199 4.199 17 C -0.231 4.231 18 C -0.178 4.178 19 C 0.021 3.979 20 C -0.177 4.177 21 C -0.196 4.196 22 C -0.210 4.210 23 H 0.096 0.904 24 H 0.230 0.770 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.176 -15.263 -2.720 16.345 hybrid contribution -0.567 1.310 -0.215 1.444 sum 4.609 -13.953 -2.935 14.985 Atomic orbital electron populations 1.69561 1.07852 1.30477 1.46243 1.26484 0.96431 1.03389 0.94821 0.84730 0.78050 0.75342 0.79014 1.19208 1.19378 1.18680 1.19917 0.93551 0.83010 1.50370 0.88268 1.41669 1.09997 1.04844 1.59037 1.19623 0.88222 0.85097 0.89156 1.90529 1.12946 1.86516 1.57263 1.20284 0.86893 0.86217 0.76861 1.90661 1.14981 1.88033 1.50823 1.47716 1.08048 1.05113 1.70016 1.21308 0.97444 0.84424 0.94565 1.22671 0.96181 1.03666 0.97379 1.23013 0.94241 1.03351 1.02517 1.23027 1.01200 0.89517 1.04051 1.21596 0.76807 1.03314 0.96166 1.22289 0.94663 1.03020 0.97770 1.23167 1.02570 0.93197 1.00630 1.22854 0.94152 1.00696 1.03315 0.90407 0.76960 0.91245 0.86370 0.88767 0.89667 0.89682 0.87295 0.86896 0.89404 0.87710 0.92094 0.86549 0.88869 0.90025 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.72 13.03 21.76 0.28 -49.44 16 2 C -0.01 -0.43 5.51 85.14 0.47 0.04 16 3 Si 1.01 41.52 29.56 68.60 2.03 43.55 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.34 -19.15 9.67 84.35 0.82 -18.33 16 8 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16 9 N -0.52 -28.91 5.24 -308.88 -1.62 -30.53 16 10 C 0.39 20.11 7.65 87.08 0.67 20.78 16 11 O -0.58 -30.00 11.70 -3.72 -0.04 -30.05 16 12 C 0.51 22.86 7.63 87.08 0.66 23.53 16 13 O -0.57 -27.41 16.11 -3.56 -0.06 -27.46 16 14 N -0.58 -19.73 2.50 -824.08 -2.06 -21.79 16 15 C 0.14 3.81 5.73 86.38 0.49 4.30 16 16 C -0.18 -4.53 5.98 -10.79 -0.06 -4.60 16 17 C -0.19 -4.97 10.18 30.62 0.31 -4.66 16 18 C -0.14 -2.56 10.26 30.62 0.31 -2.24 16 19 C 0.14 4.35 5.31 86.38 0.46 4.81 16 20 C -0.16 -4.86 4.57 -10.79 -0.05 -4.91 16 21 C -0.16 -3.47 10.18 30.62 0.31 -3.15 16 22 C -0.17 -4.61 10.25 30.62 0.31 -4.30 16 23 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 24 H 0.40 22.64 7.36 -92.70 -0.68 21.96 16 25 H 0.07 2.03 7.24 -2.38 -0.02 2.01 16 26 H 0.12 2.19 7.78 -2.39 -0.02 2.17 16 27 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 28 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 3.25 5.74 -2.39 -0.01 3.24 16 33 H 0.10 2.28 7.51 -2.39 -0.02 2.26 16 34 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 35 H 0.12 1.94 8.03 -2.39 -0.02 1.92 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -65.41 324.58 3.63 -61.79 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.39 Total: 42.66 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.71 Total: 11.27 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.39 Total: -101.75 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -0.10 Total: -57.51 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.41 3.63 -61.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070505578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.012 kcal (2) G-P(sol) polarization free energy of solvation -65.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds