Wall clock time and date at job start Mon Mar 30 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48507 * 109.46971 * 269.99810 * 3 2 1 5 5 H 1.48503 * 109.47192 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47020 * 150.00498 * 3 2 1 7 7 C 1.37873 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00641 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99833 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00078 * 90.00253 * 10 9 7 12 12 O 1.21284 * 120.00158 * 5.39116 * 11 10 9 13 13 C 1.50703 * 120.00040 * 185.39268 * 11 10 9 14 14 H 1.08998 * 109.59987 * 312.21457 * 13 11 10 15 15 C 1.53346 * 109.60021 * 191.89481 * 13 11 10 16 16 C 1.53076 * 108.42180 * 172.71446 * 15 13 11 17 17 C 1.50175 * 109.88907 * 48.91737 * 16 15 13 18 18 O 1.21277 * 118.24790 * 162.42345 * 17 16 15 19 19 N 1.33357 * 123.50539 * 342.37662 * 17 16 15 20 20 C 1.45761 * 124.10522 * 2.27055 * 19 17 16 21 21 C 1.46500 * 120.00082 * 269.99761 * 10 9 7 22 22 C 1.52998 * 117.49830 * 2.19470 * 21 10 9 23 23 C 1.53004 * 117.49935 * 293.53535 * 21 10 9 24 24 H 0.97000 * 120.00142 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47022 * 59.99980 * 9 7 2 26 26 H 1.09001 * 109.47013 * 300.00065 * 9 7 2 27 27 H 1.09007 * 109.67551 * 292.44226 * 15 13 11 28 28 H 1.08995 * 109.67796 * 52.97933 * 15 13 11 29 29 H 1.09002 * 109.39719 * 169.02821 * 16 15 13 30 30 H 1.08992 * 109.39857 * 288.76796 * 16 15 13 31 31 H 0.96995 * 117.94746 * 182.24985 * 19 17 16 32 32 H 1.09000 * 109.29436 * 220.58884 * 20 19 17 33 33 H 1.08999 * 109.13128 * 101.11296 * 20 19 17 34 34 H 1.08999 * 115.54743 * 147.86466 * 21 10 9 35 35 H 1.09004 * 117.49832 * 0.02562 * 22 21 10 36 36 H 1.09000 * 117.50008 * 145.01699 * 22 21 10 37 37 H 1.08992 * 117.50071 * 214.97773 * 23 21 10 38 38 H 1.09003 * 117.49313 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.2239 -3.2110 -1.1671 12 8 4.1159 -2.6104 -2.2152 13 6 4.6088 -4.6680 -1.1698 14 1 5.4060 -4.8370 -0.4458 15 6 5.0909 -5.0702 -2.5689 16 6 5.6446 -6.4955 -2.4986 17 6 4.6671 -7.3890 -1.7905 18 8 4.7839 -8.5886 -1.9256 19 7 3.6781 -6.9340 -1.0203 20 6 3.3924 -5.5207 -0.8071 21 6 4.2444 -3.2657 1.2688 22 6 3.9223 -2.5085 2.5587 23 6 5.3792 -2.7414 2.1510 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8894 26 1 3.8745 -0.6809 -0.8905 27 1 4.2560 -5.0349 -3.2689 28 1 5.8747 -4.3877 -2.8972 29 1 5.8106 -6.8696 -3.5089 30 1 6.5898 -6.4903 -1.9559 31 1 3.1134 -7.5843 -0.5742 32 1 3.1381 -5.3586 0.2403 33 1 2.5484 -5.2286 -1.4320 34 1 4.0699 -4.3416 1.2599 35 1 3.5279 -1.4967 2.4632 36 1 3.5361 -3.0862 3.3984 37 1 5.9510 -3.4722 2.7228 38 1 5.9440 -1.8831 1.7871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084438524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:50 Heat of formation + Delta-G solvation = -43.538443 kcal Electronic energy + Delta-G solvation = -20914.635239 eV Core-core repulsion = 17757.929158 eV Total energy + Delta-G solvation = -3156.706081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63071 -39.30034 -37.13695 -36.11275 -33.41966 -32.98596 -32.19722 -30.32854 -27.91673 -24.80749 -23.62062 -22.56945 -22.17043 -21.60805 -19.53020 -18.36253 -17.51046 -17.00944 -16.81968 -16.14177 -15.55362 -15.33127 -14.81631 -14.44380 -14.19421 -14.09245 -13.78070 -13.47092 -13.13762 -12.63537 -12.24849 -11.94310 -11.85751 -11.69726 -11.24347 -11.20023 -11.06296 -11.00051 -10.79907 -10.52182 -10.29287 -10.10730 -9.80983 -9.60671 -9.19442 -9.11631 -8.66666 -7.75765 -6.16630 -4.15954 2.57105 2.92630 3.22083 3.26967 3.28630 3.31031 3.52400 4.13376 4.31854 4.45420 4.54579 4.64911 4.69710 4.96450 5.08441 5.12787 5.20254 5.22675 5.25990 5.28958 5.45038 5.66575 5.70367 5.81265 5.93322 6.00401 6.16287 6.22030 6.42727 6.62592 6.66176 6.84799 7.16876 7.21794 7.50693 8.07291 8.12292 8.37203 8.74844 8.86987 9.43151 10.96460 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.005544 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.397906 B = 5049.496745 C = 5343.551205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.076 0.924 9 C 0.212 3.788 10 N -0.564 5.564 11 C 0.523 3.477 12 O -0.531 6.531 13 C -0.124 4.124 14 H 0.100 0.900 15 C -0.104 4.104 16 C -0.135 4.135 17 C 0.520 3.480 18 O -0.566 6.566 19 N -0.716 5.716 20 C 0.117 3.883 21 C 0.069 3.931 22 C -0.169 4.169 23 C -0.203 4.203 24 H 0.265 0.735 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.401 0.599 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 -9.023 2.787 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.092 3.908 10 N -0.293 5.293 11 C 0.309 3.691 12 O -0.407 6.407 13 C -0.146 4.146 14 H 0.118 0.882 15 C -0.142 4.142 16 C -0.174 4.174 17 C 0.308 3.692 18 O -0.445 6.445 19 N -0.367 5.367 20 C -0.007 4.007 21 C -0.036 4.036 22 C -0.207 4.207 23 C -0.242 4.242 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.236 0.764 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.770 -8.984 2.023 14.171 hybrid contribution -0.041 0.837 0.405 0.931 sum 10.730 -8.147 2.428 13.690 Atomic orbital electron populations 1.69883 1.06156 1.27053 1.50211 1.24827 0.94725 0.98834 0.94435 0.86909 0.80161 0.84013 0.78969 1.19859 1.21001 1.19130 1.21250 0.88853 0.94831 1.51615 0.90638 1.19735 0.95871 0.77625 0.97563 1.47420 1.63161 1.15486 1.03241 1.19862 0.77751 0.87702 0.83811 1.90693 1.51513 1.67626 1.30867 1.21624 0.99047 0.93740 1.00174 0.88184 1.21499 1.02552 0.94621 0.95524 1.21685 0.98390 0.94853 1.02511 1.20252 0.81522 0.89054 0.78411 1.90743 1.73633 1.16588 1.63537 1.45470 1.33271 1.08563 1.49426 1.21407 0.97187 0.79363 1.02766 1.21654 1.03023 0.95819 0.83145 1.23321 0.97004 1.03636 0.96704 1.23456 0.92301 1.04035 1.04420 0.92484 0.94991 0.94355 0.90091 0.89668 0.87848 0.88172 0.76371 0.89448 0.90290 0.86281 0.86706 0.88431 0.88661 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.53 -14.15 9.94 -34.44 -0.34 -14.49 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.21 4.83 3.70 -5.19 -0.02 4.81 16 10 N -0.56 -10.47 2.78 -167.46 -0.47 -10.94 16 11 C 0.52 9.47 6.89 -10.98 -0.08 9.40 16 12 O -0.53 -11.82 15.62 5.55 0.09 -11.74 16 13 C -0.12 -1.59 1.75 -91.64 -0.16 -1.75 16 14 H 0.10 1.08 7.48 -51.93 -0.39 0.69 16 15 C -0.10 -1.24 4.64 -26.51 -0.12 -1.36 16 16 C -0.13 -1.40 6.03 -28.10 -0.17 -1.57 16 17 C 0.52 6.66 7.71 -11.87 -0.09 6.57 16 18 O -0.57 -9.26 17.78 5.56 0.10 -9.16 16 19 N -0.72 -8.00 5.45 -61.39 -0.33 -8.34 16 20 C 0.12 1.39 6.23 -4.48 -0.03 1.36 16 21 C 0.07 0.99 5.48 -67.93 -0.37 0.62 16 22 C -0.17 -2.40 9.71 -26.69 -0.26 -2.66 16 23 C -0.20 -2.50 10.37 -26.69 -0.28 -2.78 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.70 5.22 -51.93 -0.27 0.43 16 26 H 0.04 0.95 6.78 -51.93 -0.35 0.60 16 27 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 28 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.40 3.99 8.80 -40.82 -0.36 3.63 16 32 H 0.09 0.94 5.91 -51.93 -0.31 0.63 16 33 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 34 H 0.12 1.38 5.08 -51.93 -0.26 1.12 16 35 H 0.11 1.97 6.24 -51.93 -0.32 1.65 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -33.46 308.65 -7.11 -40.56 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.23 Total: 4.56 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.02 Total: 0.12 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.03 Total: -45.01 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.19 Total: -20.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.46 -7.11 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084438524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.975 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds