Wall clock time and date at job start Mon Mar 30 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48507 * 109.46971 * 269.99810 * 3 2 1 5 5 H 1.48503 * 109.47192 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47020 * 150.00498 * 3 2 1 7 7 C 1.37873 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00641 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99833 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00078 * 90.00253 * 10 9 7 12 12 O 1.21284 * 120.00158 * 5.39116 * 11 10 9 13 13 C 1.50703 * 120.00040 * 185.39268 * 11 10 9 14 14 H 1.08998 * 109.59987 * 312.21457 * 13 11 10 15 15 C 1.53346 * 109.60021 * 191.89481 * 13 11 10 16 16 C 1.53076 * 108.42180 * 172.71446 * 15 13 11 17 17 C 1.50175 * 109.88907 * 48.91737 * 16 15 13 18 18 O 1.21277 * 118.24790 * 162.42345 * 17 16 15 19 19 N 1.33357 * 123.50539 * 342.37662 * 17 16 15 20 20 C 1.45761 * 124.10522 * 2.27055 * 19 17 16 21 21 C 1.46500 * 120.00082 * 269.99761 * 10 9 7 22 22 C 1.52998 * 117.49830 * 2.19470 * 21 10 9 23 23 C 1.53004 * 117.49935 * 293.53535 * 21 10 9 24 24 H 0.97000 * 120.00142 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47022 * 59.99980 * 9 7 2 26 26 H 1.09001 * 109.47013 * 300.00065 * 9 7 2 27 27 H 1.09007 * 109.67551 * 292.44226 * 15 13 11 28 28 H 1.08995 * 109.67796 * 52.97933 * 15 13 11 29 29 H 1.09002 * 109.39719 * 169.02821 * 16 15 13 30 30 H 1.08992 * 109.39857 * 288.76796 * 16 15 13 31 31 H 0.96995 * 117.94746 * 182.24985 * 19 17 16 32 32 H 1.09000 * 109.29436 * 220.58884 * 20 19 17 33 33 H 1.08999 * 109.13128 * 101.11296 * 20 19 17 34 34 H 1.08999 * 115.54743 * 147.86466 * 21 10 9 35 35 H 1.09004 * 117.49832 * 0.02562 * 22 21 10 36 36 H 1.09000 * 117.50008 * 145.01699 * 22 21 10 37 37 H 1.08992 * 117.50071 * 214.97773 * 23 21 10 38 38 H 1.09003 * 117.49313 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.2239 -3.2110 -1.1671 12 8 4.1159 -2.6104 -2.2152 13 6 4.6088 -4.6680 -1.1698 14 1 5.4060 -4.8370 -0.4458 15 6 5.0909 -5.0702 -2.5689 16 6 5.6446 -6.4955 -2.4986 17 6 4.6671 -7.3890 -1.7905 18 8 4.7839 -8.5886 -1.9256 19 7 3.6781 -6.9340 -1.0203 20 6 3.3924 -5.5207 -0.8071 21 6 4.2444 -3.2657 1.2688 22 6 3.9223 -2.5085 2.5587 23 6 5.3792 -2.7414 2.1510 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8894 26 1 3.8745 -0.6809 -0.8905 27 1 4.2560 -5.0349 -3.2689 28 1 5.8747 -4.3877 -2.8972 29 1 5.8106 -6.8696 -3.5089 30 1 6.5898 -6.4903 -1.9559 31 1 3.1134 -7.5843 -0.5742 32 1 3.1381 -5.3586 0.2403 33 1 2.5484 -5.2286 -1.4320 34 1 4.0699 -4.3416 1.2599 35 1 3.5279 -1.4967 2.4632 36 1 3.5361 -3.0862 3.3984 37 1 5.9510 -3.4722 2.7228 38 1 5.9440 -1.8831 1.7871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084438524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:50 Heat of formation + Delta-G solvation = -68.222025 kcal Electronic energy + Delta-G solvation = -20915.705599 eV Core-core repulsion = 17757.929158 eV Total energy + Delta-G solvation = -3157.776441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77629 -40.56464 -38.39366 -37.29181 -35.19182 -34.01240 -33.88519 -31.59390 -29.60708 -25.83244 -25.10521 -23.95521 -23.22619 -22.85672 -20.66755 -19.60686 -19.04988 -18.70628 -17.97388 -17.27190 -16.93936 -16.46615 -16.28949 -15.81914 -15.48148 -15.27490 -14.92885 -14.69169 -14.57772 -14.27488 -13.66459 -13.49207 -13.10862 -12.83797 -12.69298 -12.59756 -12.40265 -12.21184 -12.08350 -11.96325 -11.81698 -11.56076 -11.37358 -10.85117 -10.81640 -10.62062 -10.17328 -9.25419 -8.32387 -6.36107 1.31870 1.35598 1.42647 1.56180 1.60646 2.11103 2.30355 2.31666 3.01488 3.04576 3.38092 3.54706 3.65176 3.69199 3.90378 4.00146 4.15071 4.21770 4.23394 4.39838 4.49996 4.68525 4.74288 4.83013 4.89848 4.93864 4.98508 5.03311 5.19992 5.23165 5.38499 5.45476 5.58283 5.75272 6.24160 6.25047 6.64643 6.67184 7.15039 7.21922 7.36107 8.84022 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.005544 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.397906 B = 5049.496745 C = 5343.551205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.524 4.524 8 H 0.036 0.964 9 C 0.222 3.778 10 N -0.571 5.571 11 C 0.516 3.484 12 O -0.583 6.583 13 C -0.111 4.111 14 H 0.135 0.865 15 C -0.100 4.100 16 C -0.123 4.123 17 C 0.518 3.482 18 O -0.603 6.603 19 N -0.704 5.704 20 C 0.125 3.875 21 C 0.048 3.952 22 C -0.185 4.185 23 C -0.172 4.172 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.408 0.592 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.416 -9.783 4.246 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.164 1.164 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.100 3.900 10 N -0.299 5.299 11 C 0.304 3.696 12 O -0.463 6.463 13 C -0.133 4.133 14 H 0.153 0.847 15 C -0.138 4.138 16 C -0.163 4.163 17 C 0.307 3.693 18 O -0.485 6.485 19 N -0.355 5.355 20 C 0.000 4.000 21 C -0.056 4.056 22 C -0.223 4.223 23 C -0.210 4.210 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.245 0.755 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.169 0.831 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.397 -9.767 3.530 16.951 hybrid contribution -0.924 1.029 -0.043 1.383 sum 12.473 -8.739 3.488 15.624 Atomic orbital electron populations 1.70030 1.08032 1.28117 1.52146 1.25715 0.95506 1.02838 0.94203 0.85875 0.79936 0.79249 0.78896 1.20339 1.20266 1.16398 1.21456 0.91108 0.93248 1.50447 0.94586 1.19326 0.92997 0.80633 0.97017 1.47450 1.62774 1.14284 1.05417 1.20767 0.76478 0.89584 0.82778 1.90663 1.53713 1.69220 1.32655 1.21584 1.00183 0.89672 1.01822 0.84693 1.21447 1.01991 0.95863 0.94501 1.21671 0.98612 0.92673 1.03311 1.20669 0.81769 0.88789 0.78075 1.90738 1.74714 1.18189 1.64872 1.45361 1.32969 1.08264 1.48910 1.21283 0.96024 0.79458 1.03248 1.22135 1.05208 0.97012 0.81198 1.23333 0.99203 1.02161 0.97557 1.23519 0.91136 1.04026 1.02320 0.92401 0.93479 0.96437 0.92153 0.89368 0.86834 0.85384 0.75546 0.87736 0.92584 0.83122 0.90239 0.85993 0.84668 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.96 21.45 0.30 -57.42 16 2 C 0.02 0.89 5.47 84.65 0.46 1.35 16 3 Si 0.94 43.06 27.47 68.60 1.88 44.94 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 7 C -0.52 -29.00 9.94 25.60 0.25 -28.74 16 8 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 9 C 0.22 10.15 3.70 85.64 0.32 10.47 16 10 N -0.57 -20.74 2.78 -802.12 -2.23 -22.98 16 11 C 0.52 18.41 6.89 87.66 0.60 19.02 16 12 O -0.58 -26.53 15.62 -3.04 -0.05 -26.58 16 13 C -0.11 -2.60 1.75 -11.45 -0.02 -2.62 16 14 H 0.14 2.28 7.48 -2.39 -0.02 2.27 16 15 C -0.10 -2.21 4.64 30.74 0.14 -2.07 16 16 C -0.12 -2.20 6.03 29.71 0.18 -2.02 16 17 C 0.52 12.09 7.71 87.71 0.68 12.77 16 18 O -0.60 -18.71 17.78 -3.02 -0.05 -18.76 16 19 N -0.70 -14.25 5.45 -467.31 -2.55 -16.80 16 20 C 0.12 2.74 6.23 86.49 0.54 3.27 16 21 C 0.05 1.24 5.48 44.99 0.25 1.49 16 22 C -0.19 -4.83 9.71 30.62 0.30 -4.53 16 23 C -0.17 -3.52 10.37 30.62 0.32 -3.21 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.05 2.02 5.22 -2.39 -0.01 2.01 16 26 H 0.02 0.88 6.78 -2.39 -0.02 0.86 16 27 H 0.06 1.59 8.13 -2.38 -0.02 1.57 16 28 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.41 7.31 8.80 -92.71 -0.82 6.50 16 32 H 0.10 1.96 5.91 -2.39 -0.01 1.95 16 33 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 34 H 0.15 2.86 5.08 -2.39 -0.01 2.85 16 35 H 0.08 2.67 6.24 -2.39 -0.01 2.66 16 36 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 37 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -76.61 308.65 1.53 -75.07 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.21 Total: 17.34 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.02 Total: 5.18 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -4.48 Total: -97.19 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.10 Total: -45.34 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Total: -76.61 1.53 -75.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084438524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.853 kcal (2) G-P(sol) polarization free energy of solvation -76.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds