Wall clock time and date at job start Mon Mar 30 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30838 * 125.89716 * 2 1 4 4 N 1.40083 * 108.20187 * 179.81797 * 3 2 1 5 5 C 1.46505 * 126.03560 * 180.23086 * 4 3 2 6 6 C 1.50703 * 109.46986 * 270.15578 * 5 4 3 7 7 H 1.08001 * 120.00241 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99669 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00188 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47009 * 59.99772 * 10 8 6 12 12 H 1.48495 * 109.47287 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46793 * 300.00331 * 10 8 6 14 14 C 1.34942 * 107.92635 * 0.36575 * 4 3 2 15 15 C 1.50706 * 126.12588 * 179.90943 * 14 4 3 16 16 C 1.35311 * 107.74927 * 359.63738 * 14 4 3 17 17 C 1.50704 * 126.04572 * 180.20657 * 16 14 4 18 18 C 1.53001 * 109.46796 * 90.00180 * 17 16 14 19 19 H 1.09001 * 109.47309 * 305.00368 * 18 17 16 20 20 C 1.52998 * 109.46939 * 65.00424 * 18 17 16 21 21 C 1.50699 * 109.46722 * 185.00415 * 18 17 16 22 22 O 1.20826 * 120.00282 * 0.02562 * 21 18 17 23 23 O 1.34230 * 119.99805 * 179.97438 * 21 18 17 24 24 H 1.09001 * 109.46811 * 269.95797 * 1 2 3 25 25 H 1.09001 * 109.47199 * 29.95543 * 1 2 3 26 26 H 1.08997 * 109.46974 * 149.96199 * 1 2 3 27 27 H 1.08999 * 109.46530 * 30.15027 * 5 4 3 28 28 H 1.08996 * 109.46956 * 150.15401 * 5 4 3 29 29 H 0.97003 * 120.00367 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.46953 * 269.68180 * 15 14 4 31 31 H 1.09000 * 109.47318 * 29.67778 * 15 14 4 32 32 H 1.09000 * 109.47161 * 149.68408 * 15 14 4 33 33 H 1.08994 * 109.47248 * 210.00427 * 17 16 14 34 34 H 1.09002 * 109.46837 * 330.00462 * 17 16 14 35 35 H 1.09006 * 109.46687 * 180.02562 * 20 18 17 36 36 H 1.08994 * 109.46998 * 299.99450 * 20 18 17 37 37 H 1.09001 * 109.47166 * 59.99857 * 20 18 17 38 38 H 0.96703 * 117.00206 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0042 5 6 4.7899 1.5008 0.0104 6 6 5.1980 1.8039 -1.4083 7 1 4.6343 1.3918 -2.2322 8 6 6.2912 2.6073 -1.6544 9 7 6.9774 3.1095 -0.6512 10 14 6.7976 2.9824 -3.4130 11 1 5.6826 3.6692 -4.1133 12 1 7.9947 3.8610 -3.4066 13 1 7.1181 1.7148 -4.1169 14 6 3.6142 -0.7153 -0.0014 15 6 4.8351 -1.5989 -0.0016 16 6 2.3272 -1.1330 -0.0009 17 6 1.8599 -2.5658 -0.0016 18 6 1.7028 -3.0517 1.4407 19 1 2.6382 -2.8998 1.9792 20 6 0.5858 -2.2620 2.1259 21 6 1.3549 -4.5179 1.4416 22 8 1.2445 -5.1133 0.3960 23 8 1.1687 -5.1628 2.6040 24 1 -0.3633 -0.0008 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5144 27 1 4.5551 2.4311 0.5276 28 1 5.6082 0.9961 0.5240 29 1 7.7467 3.6744 -0.8244 30 1 5.1291 -1.8122 -1.0293 31 1 5.6514 -1.0908 0.5118 32 1 4.6078 -2.5327 0.5126 33 1 0.9009 -2.6349 -0.5149 34 1 2.5931 -3.1868 -0.5164 35 1 0.4742 -2.6079 3.1536 36 1 0.8375 -1.2015 2.1253 37 1 -0.3496 -2.4138 1.5874 38 1 0.9468 -6.1027 2.5541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087706494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:10 Heat of formation + Delta-G solvation = -46.193195 kcal Electronic energy + Delta-G solvation = -20397.109064 eV Core-core repulsion = 17240.287865 eV Total energy + Delta-G solvation = -3156.821199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83674 -40.20229 -36.33180 -35.28978 -33.78295 -32.53934 -31.10844 -29.03120 -27.93729 -26.02479 -25.45790 -24.15647 -22.42575 -20.48350 -18.86986 -18.55046 -18.03981 -16.85743 -16.61605 -15.80222 -15.50205 -14.70625 -14.34606 -14.08026 -13.60907 -13.40560 -13.16596 -12.93282 -12.54048 -12.49115 -12.31886 -12.01045 -11.85883 -11.74111 -11.59664 -11.44671 -11.29417 -11.17296 -10.93781 -10.84121 -10.79376 -10.39353 -10.26095 -9.77081 -9.65599 -8.65790 -8.21827 -7.52775 -6.27782 -4.35336 2.17056 2.70420 2.96139 3.22076 3.26031 3.29852 3.39005 3.58741 4.28320 4.86178 4.93189 5.05260 5.09082 5.28276 5.32858 5.50026 5.59138 5.66054 5.78529 5.82310 5.89502 5.93614 5.99999 6.02344 6.15440 6.26361 6.27743 6.35874 6.42831 6.50282 6.80325 7.00647 7.08601 7.47291 7.64447 7.83484 7.86543 8.02173 8.63664 8.73027 9.31215 10.79805 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029687 B = 0.004509 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.933638 B = 6207.822058 C = 6548.197895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.053 3.947 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.268 4.268 17 C -0.013 4.013 18 C -0.077 4.077 19 H 0.107 0.893 20 C -0.143 4.143 21 C 0.481 3.519 22 O -0.517 6.517 23 O -0.518 6.518 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.269 0.731 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -13.092 6.053 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 N -0.119 5.119 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.575 4.575 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.200 1.200 14 C -0.036 4.036 15 C -0.146 4.146 16 C -0.280 4.280 17 C -0.051 4.051 18 C -0.096 4.096 19 H 0.125 0.875 20 C -0.200 4.200 21 C 0.324 3.676 22 O -0.405 6.405 23 O -0.330 6.330 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.241 -11.290 5.840 15.715 hybrid contribution 0.360 -1.146 -0.999 1.562 sum -8.881 -12.437 4.841 16.030 Atomic orbital electron populations 1.20146 0.88073 1.02409 1.01976 1.21915 0.96075 0.90660 1.02451 1.77292 0.87478 1.22616 1.24543 1.49256 1.05813 1.04161 1.51061 1.19664 0.77939 0.89534 0.98932 1.21263 1.13096 1.31831 0.91333 0.91854 1.24919 0.95701 0.94984 0.98100 1.69906 1.19090 1.32985 1.30992 0.86413 0.78047 0.78498 0.83731 1.19943 1.20925 1.19952 1.20776 0.96083 0.85750 1.00986 1.20366 0.93818 0.97129 1.03238 1.19194 0.91376 0.94654 1.22792 1.19568 1.01879 0.91561 0.92119 1.21167 1.01974 0.85630 1.00834 0.87524 1.21876 0.96755 1.01534 0.99864 1.23894 0.72114 0.90957 0.80646 1.90707 1.47438 1.68956 1.33394 1.84579 1.82319 1.29647 1.36456 0.91259 0.91592 0.91276 0.93028 0.93062 0.92183 0.90372 0.90804 0.91147 0.91055 0.91065 0.92027 0.90031 0.92265 0.73725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.23 36.01 0.33 -0.58 16 2 C 0.05 0.98 6.27 -82.40 -0.52 0.46 16 3 N -0.30 -6.64 12.58 33.67 0.42 -6.21 16 4 N -0.32 -7.41 3.60 -58.31 -0.21 -7.62 16 5 C 0.26 6.52 6.00 -5.19 -0.03 6.49 16 6 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 10 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.10 1.86 6.93 -82.27 -0.57 1.29 16 15 C -0.09 -1.41 9.73 36.01 0.35 -1.06 16 16 C -0.27 -4.62 4.78 -105.05 -0.50 -5.12 16 17 C -0.01 -0.18 3.94 -27.88 -0.11 -0.29 16 18 C -0.08 -0.90 2.82 -91.77 -0.26 -1.16 16 19 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 20 C -0.14 -1.52 7.89 37.16 0.29 -1.23 16 21 C 0.48 5.58 7.63 36.01 0.27 5.86 16 22 O -0.52 -7.46 16.68 -18.75 -0.31 -7.77 16 23 O -0.52 -4.60 13.33 -39.26 -0.52 -5.12 16 24 H 0.07 0.81 6.91 -51.93 -0.36 0.45 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.81 7.25 -51.93 -0.38 0.43 16 27 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.05 1.29 7.04 -51.93 -0.37 0.92 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 32 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 33 H 0.07 0.97 7.25 -51.93 -0.38 0.59 16 34 H 0.07 1.01 7.59 -51.93 -0.39 0.62 16 35 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.08 0.98 5.34 -51.93 -0.28 0.71 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 1.86 9.10 45.56 0.41 2.27 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -31.97 320.66 -5.82 -37.79 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.59 Total: 0.97 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.68 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.95 Total: -38.09 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.84 Total: -12.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.97 -5.82 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087706494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.406 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds