Wall clock time and date at job start Mon Mar 30 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30833 * 125.90125 * 2 1 4 4 N 1.40087 * 108.20551 * 180.25972 * 3 2 1 5 5 C 1.46507 * 126.03917 * 179.74004 * 4 3 2 6 6 C 1.50693 * 109.46815 * 269.97623 * 5 4 3 7 7 H 1.07999 * 120.00603 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99510 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00227 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46830 * 90.00154 * 10 8 6 12 12 H 1.48497 * 109.47415 * 209.99936 * 10 8 6 13 13 H 1.48498 * 109.47183 * 330.00544 * 10 8 6 14 14 C 1.34952 * 107.92575 * 359.71626 * 4 3 2 15 15 C 1.50700 * 126.12562 * 179.97438 * 14 4 3 16 16 C 1.35316 * 107.74115 * 0.02562 * 14 4 3 17 17 C 1.50706 * 126.03411 * 180.02562 * 16 14 4 18 18 C 1.52996 * 109.47127 * 89.99902 * 17 16 14 19 19 H 1.08997 * 109.47192 * 54.99972 * 18 17 16 20 20 C 1.52997 * 109.47342 * 294.99707 * 18 17 16 21 21 C 1.50706 * 109.47215 * 174.99886 * 18 17 16 22 22 O 1.20825 * 119.99859 * 359.97438 * 21 18 17 23 23 O 1.34224 * 120.00295 * 180.02562 * 21 18 17 24 24 H 1.09007 * 109.46989 * 270.21442 * 1 2 3 25 25 H 1.09002 * 109.47118 * 30.20712 * 1 2 3 26 26 H 1.08997 * 109.47510 * 150.20980 * 1 2 3 27 27 H 1.09001 * 109.46803 * 29.97692 * 5 4 3 28 28 H 1.09003 * 109.46836 * 149.97421 * 5 4 3 29 29 H 0.97002 * 119.99684 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.46796 * 270.02218 * 15 14 4 31 31 H 1.08991 * 109.47323 * 30.02881 * 15 14 4 32 32 H 1.09000 * 109.46418 * 150.02890 * 15 14 4 33 33 H 1.08995 * 109.47257 * 329.99840 * 17 16 14 34 34 H 1.08999 * 109.46642 * 209.99683 * 17 16 14 35 35 H 1.08995 * 109.47425 * 179.97438 * 20 18 17 36 36 H 1.08997 * 109.47193 * 300.00264 * 20 18 17 37 37 H 1.09004 * 109.47195 * 59.99790 * 20 18 17 38 38 H 0.96700 * 117.00196 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7900 1.5006 -0.0134 6 6 5.1881 1.7948 -1.4367 7 1 4.6186 1.3778 -2.2541 8 6 6.2802 2.5958 -1.6955 9 7 6.6279 2.8522 -2.9377 10 14 7.2657 3.3167 -0.2819 11 1 8.3547 2.3785 0.0913 12 1 7.8526 4.6154 -0.6991 13 1 6.3735 3.5290 0.8860 14 6 3.6142 -0.7155 -0.0033 15 6 4.8350 -1.5991 -0.0083 16 6 2.3270 -1.1330 0.0037 17 6 1.8598 -2.5658 0.0094 18 6 1.7083 -3.0471 1.4537 19 1 1.0453 -2.3716 1.9942 20 6 3.0798 -3.0660 2.1315 21 6 1.1249 -4.4366 1.4617 22 8 0.8573 -4.9854 0.4191 23 8 0.9016 -5.0641 2.6270 24 1 -0.3633 0.0038 1.0277 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3634 -0.8918 -0.5105 27 1 4.5589 2.4341 0.4997 28 1 5.6118 0.9989 0.4975 29 1 7.3960 3.4160 -3.1198 30 1 5.1237 -1.8139 -1.0372 31 1 5.6538 -1.0904 0.5003 32 1 4.6101 -2.5322 0.5083 33 1 2.5908 -3.1884 -0.5063 34 1 0.8987 -2.6365 -0.4998 35 1 2.9719 -3.4085 3.1607 36 1 3.7429 -3.7415 1.5911 37 1 3.5019 -2.0610 2.1258 38 1 0.5259 -5.9540 2.5815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087706495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:13 Heat of formation + Delta-G solvation = -38.291420 kcal Electronic energy + Delta-G solvation = -20466.653073 eV Core-core repulsion = 17310.174520 eV Total energy + Delta-G solvation = -3156.478553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92483 -40.24887 -36.36564 -35.31908 -33.98130 -32.53692 -31.03045 -29.42755 -28.29987 -26.19182 -25.36577 -24.26394 -22.11368 -20.56642 -18.77759 -18.72216 -18.07669 -17.16059 -16.77760 -15.86177 -15.51538 -14.89592 -14.38298 -14.13693 -13.60554 -13.36116 -13.09871 -13.01484 -12.80616 -12.66896 -12.31387 -12.12526 -12.07527 -11.92514 -11.71782 -11.61949 -11.42513 -11.02374 -11.00548 -10.85142 -10.73617 -10.43407 -10.23033 -9.73736 -9.69697 -8.81154 -8.28021 -7.58011 -6.29008 -4.32344 2.14048 2.60924 2.92493 3.11312 3.19477 3.20542 3.33002 3.46062 4.18812 4.81801 4.87573 4.97255 5.04503 5.20862 5.25839 5.43320 5.52458 5.65558 5.70627 5.79424 5.82095 5.88900 5.90336 6.00576 6.10973 6.17396 6.24794 6.26757 6.33417 6.41324 6.48024 6.73011 6.88799 7.25884 7.36911 7.79934 7.81659 8.28116 8.54748 8.76205 9.26048 10.83551 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.004721 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.978278 B = 5929.454725 C = 6298.854295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.056 3.944 3 N -0.292 5.292 4 N -0.324 5.324 5 C 0.230 3.770 6 C -0.541 4.541 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.886 5.886 10 Si 0.872 3.128 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.102 3.898 15 C -0.099 4.099 16 C -0.265 4.265 17 C -0.014 4.014 18 C -0.076 4.076 19 H 0.108 0.892 20 C -0.147 4.147 21 C 0.481 3.519 22 O -0.516 6.516 23 O -0.519 6.519 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -13.109 11.600 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 N -0.116 5.116 4 N -0.103 5.103 5 C 0.111 3.889 6 C -0.579 4.579 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.523 5.523 10 Si 0.698 3.302 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.030 4.030 15 C -0.157 4.157 16 C -0.277 4.277 17 C -0.052 4.052 18 C -0.095 4.095 19 H 0.126 0.874 20 C -0.204 4.204 21 C 0.324 3.676 22 O -0.404 6.404 23 O -0.330 6.330 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.648 -11.338 11.206 17.681 hybrid contribution 0.424 -0.870 0.425 1.057 sum -7.224 -12.208 11.631 18.344 Atomic orbital electron populations 1.20057 0.87843 1.02660 1.01957 1.21972 0.96223 0.90655 1.02045 1.77299 0.87110 1.22547 1.24632 1.48802 1.05498 1.04011 1.51963 1.19977 0.79403 0.89813 0.99731 1.21154 1.13973 1.32517 0.90281 0.90155 1.24811 0.96621 0.95294 0.95769 1.69876 1.26912 1.37026 1.18464 0.86906 0.80877 0.79588 0.82799 1.19625 1.20441 1.18821 1.20739 0.96169 0.85383 1.00671 1.20634 0.93600 0.97737 1.03725 1.19202 0.91351 0.94713 1.22460 1.19582 1.02058 0.91464 0.92140 1.21141 0.98870 0.88736 1.00801 0.87401 1.21956 0.94415 1.03865 1.00133 1.23856 0.74219 0.88912 0.80630 1.90713 1.48667 1.67326 1.33665 1.84571 1.77047 1.35076 1.36330 0.91442 0.91348 0.91131 0.93244 0.93930 0.92091 0.90112 0.91095 0.90107 0.91055 0.90768 0.91812 0.92007 0.90117 0.73677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.26 36.00 0.37 -0.54 16 2 C 0.06 1.02 7.22 -82.41 -0.59 0.42 16 3 N -0.29 -6.48 12.58 33.67 0.42 -6.06 16 4 N -0.32 -7.20 3.60 -58.31 -0.21 -7.41 16 5 C 0.23 5.44 5.07 -5.19 -0.03 5.42 16 6 C -0.54 -15.06 9.94 -34.44 -0.34 -15.40 16 7 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.08 2.20 5.47 -17.81 -0.10 2.10 16 9 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 10 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 14 C 0.10 1.90 5.98 -82.26 -0.49 1.41 16 15 C -0.10 -1.52 9.16 36.01 0.33 -1.19 16 16 C -0.27 -4.49 4.82 -105.05 -0.51 -5.00 16 17 C -0.01 -0.19 4.00 -27.88 -0.11 -0.30 16 18 C -0.08 -0.86 2.82 -91.77 -0.26 -1.12 16 19 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.15 -1.53 7.52 37.16 0.28 -1.25 16 21 C 0.48 5.40 7.63 36.01 0.27 5.67 16 22 O -0.52 -7.29 16.68 -18.75 -0.31 -7.60 16 23 O -0.52 -4.40 13.33 -39.24 -0.52 -4.92 16 24 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 27 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 28 H 0.04 0.92 6.48 -51.93 -0.34 0.59 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.07 7.08 -51.93 -0.37 0.70 16 32 H 0.08 0.98 4.54 -51.93 -0.24 0.74 16 33 H 0.07 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.07 1.01 7.06 -51.93 -0.37 0.64 16 35 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.06 0.60 6.97 -51.93 -0.36 0.24 16 37 H 0.08 0.96 5.80 -51.93 -0.30 0.66 16 38 H 0.41 1.73 9.10 45.56 0.41 2.14 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -33.43 314.53 -5.36 -38.80 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.41 Total: 2.39 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.18 Total: -9.78 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.99 Total: -38.95 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.84 Total: -12.52 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.43 -5.36 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087706495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.507 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds