Wall clock time and date at job start Mon Mar 30 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30833 * 125.90125 * 2 1 4 4 N 1.40087 * 108.20551 * 180.25972 * 3 2 1 5 5 C 1.46507 * 126.03917 * 179.74004 * 4 3 2 6 6 C 1.50693 * 109.46815 * 269.97623 * 5 4 3 7 7 H 1.07999 * 120.00603 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99510 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00227 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46830 * 90.00154 * 10 8 6 12 12 H 1.48497 * 109.47415 * 209.99936 * 10 8 6 13 13 H 1.48498 * 109.47183 * 330.00544 * 10 8 6 14 14 C 1.34952 * 107.92575 * 359.71626 * 4 3 2 15 15 C 1.50700 * 126.12562 * 179.97438 * 14 4 3 16 16 C 1.35316 * 107.74115 * 0.02562 * 14 4 3 17 17 C 1.50706 * 126.03411 * 180.02562 * 16 14 4 18 18 C 1.52996 * 109.47127 * 89.99902 * 17 16 14 19 19 H 1.08997 * 109.47192 * 54.99972 * 18 17 16 20 20 C 1.52997 * 109.47342 * 294.99707 * 18 17 16 21 21 C 1.50706 * 109.47215 * 174.99886 * 18 17 16 22 22 O 1.20825 * 119.99859 * 359.97438 * 21 18 17 23 23 O 1.34224 * 120.00295 * 180.02562 * 21 18 17 24 24 H 1.09007 * 109.46989 * 270.21442 * 1 2 3 25 25 H 1.09002 * 109.47118 * 30.20712 * 1 2 3 26 26 H 1.08997 * 109.47510 * 150.20980 * 1 2 3 27 27 H 1.09001 * 109.46803 * 29.97692 * 5 4 3 28 28 H 1.09003 * 109.46836 * 149.97421 * 5 4 3 29 29 H 0.97002 * 119.99684 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.46796 * 270.02218 * 15 14 4 31 31 H 1.08991 * 109.47323 * 30.02881 * 15 14 4 32 32 H 1.09000 * 109.46418 * 150.02890 * 15 14 4 33 33 H 1.08995 * 109.47257 * 329.99840 * 17 16 14 34 34 H 1.08999 * 109.46642 * 209.99683 * 17 16 14 35 35 H 1.08995 * 109.47425 * 179.97438 * 20 18 17 36 36 H 1.08997 * 109.47193 * 300.00264 * 20 18 17 37 37 H 1.09004 * 109.47195 * 59.99790 * 20 18 17 38 38 H 0.96700 * 117.00196 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7900 1.5006 -0.0134 6 6 5.1881 1.7948 -1.4367 7 1 4.6186 1.3778 -2.2541 8 6 6.2802 2.5958 -1.6955 9 7 6.6279 2.8522 -2.9377 10 14 7.2657 3.3167 -0.2819 11 1 8.3547 2.3785 0.0913 12 1 7.8526 4.6154 -0.6991 13 1 6.3735 3.5290 0.8860 14 6 3.6142 -0.7155 -0.0033 15 6 4.8350 -1.5991 -0.0083 16 6 2.3270 -1.1330 0.0037 17 6 1.8598 -2.5658 0.0094 18 6 1.7083 -3.0471 1.4537 19 1 1.0453 -2.3716 1.9942 20 6 3.0798 -3.0660 2.1315 21 6 1.1249 -4.4366 1.4617 22 8 0.8573 -4.9854 0.4191 23 8 0.9016 -5.0641 2.6270 24 1 -0.3633 0.0038 1.0277 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3634 -0.8918 -0.5105 27 1 4.5589 2.4341 0.4997 28 1 5.6118 0.9989 0.4975 29 1 7.3960 3.4160 -3.1198 30 1 5.1237 -1.8139 -1.0372 31 1 5.6538 -1.0904 0.5003 32 1 4.6101 -2.5322 0.5083 33 1 2.5908 -3.1884 -0.5063 34 1 0.8987 -2.6365 -0.4998 35 1 2.9719 -3.4085 3.1607 36 1 3.7429 -3.7415 1.5911 37 1 3.5019 -2.0610 2.1258 38 1 0.5259 -5.9540 2.5815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087706495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:13 Heat of formation + Delta-G solvation = -61.631898 kcal Electronic energy + Delta-G solvation = -20467.665192 eV Core-core repulsion = 17310.174520 eV Total energy + Delta-G solvation = -3157.490672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29885 -41.19127 -37.18999 -36.46793 -35.63170 -34.33880 -32.42380 -30.98474 -29.43139 -27.83295 -26.49413 -25.40509 -23.82816 -21.55414 -20.25087 -20.02744 -19.25582 -18.93330 -17.71676 -17.21597 -16.67323 -16.42068 -15.83281 -15.35023 -14.89146 -14.70087 -14.48246 -14.21663 -14.15379 -14.01462 -13.57579 -13.44665 -13.38660 -13.08172 -12.88708 -12.84228 -12.53876 -12.49334 -12.42447 -12.13086 -11.94512 -11.86554 -11.75179 -11.36044 -11.16141 -10.91116 -9.84262 -9.03440 -8.42743 -6.53866 1.13421 1.29146 1.32139 1.35025 1.45336 1.81774 1.89683 2.24668 2.30525 2.89631 3.78963 3.87024 3.92546 4.00757 4.21458 4.29283 4.42873 4.49912 4.56059 4.63912 4.66677 4.73582 4.80235 4.84730 4.96088 5.00387 5.06069 5.10681 5.21215 5.22594 5.30911 5.41654 5.49452 5.69424 5.91537 6.04921 6.40872 6.50844 7.05459 7.09253 7.10726 8.74179 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.004721 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.978278 B = 5929.454725 C = 6298.854295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.056 3.944 3 N -0.346 5.346 4 N -0.355 5.355 5 C 0.241 3.759 6 C -0.551 4.551 7 H 0.021 0.979 8 C 0.021 3.979 9 N -0.938 5.938 10 Si 0.951 3.049 11 H -0.249 1.249 12 H -0.278 1.278 13 H -0.246 1.246 14 C 0.089 3.911 15 C -0.097 4.097 16 C -0.256 4.256 17 C -0.009 4.009 18 C -0.073 4.073 19 H 0.118 0.882 20 C -0.145 4.145 21 C 0.493 3.507 22 O -0.549 6.549 23 O -0.510 6.510 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.274 0.726 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.249 -14.601 14.394 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.109 4.109 3 N -0.170 5.170 4 N -0.134 5.134 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.040 0.960 8 C -0.179 4.179 9 N -0.577 5.577 10 Si 0.772 3.228 11 H -0.173 1.173 12 H -0.203 1.203 13 H -0.170 1.170 14 C -0.041 4.041 15 C -0.155 4.155 16 C -0.268 4.268 17 C -0.048 4.048 18 C -0.092 4.092 19 H 0.136 0.864 20 C -0.202 4.202 21 C 0.337 3.663 22 O -0.440 6.440 23 O -0.323 6.323 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.857 -12.879 14.027 20.600 hybrid contribution 0.329 -0.520 -0.503 0.795 sum -7.528 -13.399 13.524 20.472 Atomic orbital electron populations 1.20237 0.84717 1.03500 1.03913 1.22790 0.98177 0.90241 0.99706 1.77222 0.87642 1.24829 1.27280 1.48679 1.05158 1.05034 1.54560 1.19669 0.81004 0.90507 0.96751 1.21258 1.13723 1.32691 0.91209 0.96048 1.25858 0.97703 0.95312 0.99012 1.70043 1.27974 1.38218 1.21427 0.85670 0.79423 0.78768 0.78921 1.17255 1.20314 1.16963 1.21399 0.98118 0.84499 1.00076 1.20755 0.92487 0.98661 1.03586 1.19565 0.90516 0.96087 1.20604 1.19563 1.01903 0.89141 0.94149 1.21010 0.99822 0.89306 0.99037 0.86388 1.21936 0.93815 1.03237 1.01215 1.23614 0.73432 0.88615 0.80648 1.90718 1.50250 1.68091 1.34914 1.84508 1.76652 1.36514 1.34658 0.88802 0.91724 0.89046 0.93795 0.91389 0.91724 0.91108 0.90827 0.86721 0.91211 0.90549 0.90104 0.91336 0.91510 0.71262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.26 71.23 0.73 -0.94 16 2 C 0.06 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -15.65 12.58 -47.39 -0.60 -16.25 16 4 N -0.35 -16.07 3.60 -338.39 -1.22 -17.28 16 5 C 0.24 11.53 5.07 85.63 0.43 11.96 16 6 C -0.55 -31.95 9.94 25.60 0.25 -31.69 16 7 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 8 C 0.02 1.18 5.47 84.66 0.46 1.64 16 9 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 10 Si 0.95 41.06 27.47 68.60 1.88 42.95 16 11 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.25 -9.87 6.54 99.48 0.65 -9.22 16 14 C 0.09 3.30 5.98 41.40 0.25 3.55 16 15 C -0.10 -2.90 9.16 71.24 0.65 -2.25 16 16 C -0.26 -8.46 4.82 -20.14 -0.10 -8.55 16 17 C -0.01 -0.23 4.00 29.85 0.12 -0.11 16 18 C -0.07 -1.43 2.82 -11.54 -0.03 -1.46 16 19 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 20 C -0.15 -2.58 7.52 71.98 0.54 -2.04 16 21 C 0.49 9.58 7.63 71.24 0.54 10.12 16 22 O -0.55 -14.27 16.68 21.97 0.37 -13.90 16 23 O -0.51 -6.78 13.33 -51.35 -0.68 -7.47 16 24 H 0.09 1.92 8.14 -2.38 -0.02 1.91 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.95 7.25 -2.39 -0.02 1.93 16 27 H 0.04 2.12 7.20 -2.39 -0.02 2.10 16 28 H 0.07 2.87 6.48 -2.39 -0.02 2.85 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.14 7.08 -2.39 -0.02 2.12 16 32 H 0.11 2.55 4.54 -2.39 -0.01 2.54 16 33 H 0.07 1.81 7.77 -2.39 -0.02 1.79 16 34 H 0.08 1.92 7.06 -2.39 -0.02 1.90 16 35 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 36 H 0.07 1.12 6.97 -2.39 -0.02 1.10 16 37 H 0.07 1.41 5.80 -2.39 -0.01 1.40 16 38 H 0.43 2.09 9.10 -74.06 -0.67 1.42 16 Total: -1.00 -76.42 314.53 4.58 -71.85 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.36 Total: 14.84 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.17 Total: -17.45 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -1.51 Total: -90.82 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.32 Total: -21.37 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.95 kcal Total: -76.42 4.58 -71.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087706495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.217 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds