Wall clock time and date at job start Mon Mar 30 2020 04:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86802 * 119.99711 * 2 1 4 4 H 1.48498 * 109.47103 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.47107 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47273 * 149.99627 * 3 2 1 7 7 C 1.39583 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00263 * 0.02562 * 7 2 1 9 9 N 1.36117 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00069 * 180.02562 * 9 7 2 11 11 O 1.21501 * 120.00005 * 359.97438 * 10 9 7 12 12 C 1.48833 * 120.00127 * 179.97438 * 10 9 7 13 13 O 1.21445 * 120.00063 * 6.32396 * 12 10 9 14 14 N 1.34772 * 120.00214 * 186.32020 * 12 10 9 15 15 C 1.45189 * 116.70561 * 358.31373 * 14 12 10 16 16 C 1.53151 * 110.03661 * 154.68824 * 15 14 12 17 17 C 1.53338 * 107.29214 * 53.80310 * 16 15 14 18 18 C 1.51749 * 109.48170 * 291.42726 * 17 16 15 19 19 H 1.09009 * 108.21177 * 169.78047 * 18 17 16 20 20 C 1.53330 * 111.03005 * 288.25435 * 18 17 16 21 21 C 1.53846 * 106.72696 * 124.24038 * 20 18 17 22 22 C 1.54042 * 105.81704 * 18.57903 * 21 20 18 23 23 C 1.44368 * 116.70850 * 178.06025 * 14 12 10 24 24 H 1.08997 * 108.73848 * 64.42477 * 23 14 12 25 25 H 0.97000 * 120.00263 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00570 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.37582 * 274.86500 * 15 14 12 28 28 H 1.09004 * 109.37728 * 34.50994 * 15 14 12 29 29 H 1.08995 * 109.89309 * 173.24949 * 16 15 14 30 30 H 1.08995 * 109.89279 * 294.28223 * 16 15 14 31 31 H 1.09000 * 109.47096 * 51.42691 * 17 16 15 32 32 H 1.09001 * 109.47125 * 171.42304 * 17 16 15 33 33 H 1.08999 * 110.00870 * 243.55733 * 20 18 17 34 34 H 1.08995 * 110.00846 * 4.88009 * 20 18 17 35 35 H 1.09002 * 110.18246 * 137.66849 * 21 20 18 36 36 H 1.09000 * 110.18292 * 259.41751 * 21 20 18 37 37 H 1.09003 * 110.34438 * 90.23205 * 22 21 20 38 38 H 1.09000 * 110.34586 * 212.48947 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4915 2.0465 -1.4001 5 1 1.4414 2.6527 0.7000 6 1 3.5416 1.4404 0.7001 7 6 2.0081 -1.2088 0.0005 8 1 1.4682 -2.1442 0.0005 9 7 3.3693 -1.2087 0.0000 10 6 4.0432 -2.3759 0.0000 11 8 3.4358 -3.4281 0.0010 12 6 5.5316 -2.3758 -0.0011 13 8 6.1388 -1.3304 0.1138 14 7 6.2054 -3.5359 -0.1296 15 6 5.4089 -4.7461 -0.2241 16 6 6.1919 -5.8329 -0.9666 17 6 7.5412 -5.9893 -0.2551 18 6 8.3781 -4.7432 -0.4776 19 1 9.2470 -4.7947 0.1786 20 6 8.8784 -4.6675 -1.9250 21 6 8.4066 -3.3151 -2.4865 22 6 8.0700 -2.4458 -1.2602 23 6 7.6461 -3.4489 -0.1651 24 1 7.9978 -3.0713 0.7950 25 1 -0.4850 0.8400 -0.0004 26 1 3.8543 -0.3686 -0.0004 27 1 5.1646 -5.0974 0.7784 28 1 4.4871 -4.5311 -0.7647 29 1 5.6433 -6.7741 -0.9324 30 1 6.3502 -5.5336 -2.0027 31 1 7.3746 -6.1291 0.8130 32 1 8.0658 -6.8559 -0.6575 33 1 9.9668 -4.7210 -1.9467 34 1 8.4534 -5.4834 -2.5096 35 1 9.2026 -2.8515 -3.0691 36 1 7.5201 -3.4536 -3.1054 37 1 8.9483 -1.8848 -0.9408 38 1 7.2489 -1.7669 -1.4907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087771081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:10 Heat of formation + Delta-G solvation = -59.323042 kcal Electronic energy + Delta-G solvation = -21274.453610 eV Core-core repulsion = 18117.063058 eV Total energy + Delta-G solvation = -3157.390552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88210 -38.66700 -37.13300 -35.27591 -34.03616 -32.95981 -31.87482 -29.28503 -28.02872 -25.98180 -24.63309 -22.83581 -22.08534 -20.66701 -19.36597 -18.68474 -18.06206 -16.63321 -16.36413 -15.68188 -15.17645 -15.11955 -14.89679 -14.46687 -14.00918 -13.58400 -13.29488 -13.26684 -12.93068 -12.64104 -12.47410 -12.18919 -11.74115 -11.49573 -11.34098 -11.17355 -11.06969 -10.68297 -10.63835 -10.53896 -10.47751 -10.34767 -10.19070 -9.91445 -9.73489 -8.46254 -8.30287 -7.86205 -6.60011 -4.01465 2.30869 3.03634 3.06913 3.09982 3.24806 3.94724 4.10156 4.41247 4.52371 4.68056 4.68584 5.08616 5.10194 5.13588 5.21836 5.42473 5.49623 5.54697 5.60621 5.69080 5.70075 5.79960 5.88794 5.95084 5.97218 6.05344 6.15096 6.24853 6.33184 6.39171 6.50132 6.60684 7.12975 7.26277 7.59568 7.89661 8.24327 8.52522 8.73908 9.18447 9.60489 10.49934 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.005613 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.476016 B = 4987.105255 C = 5553.599028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.053 3.947 3 Si 0.874 3.126 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.309 4.309 8 H 0.128 0.872 9 N -0.525 5.525 10 C 0.402 3.598 11 O -0.569 6.569 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.574 5.574 15 C 0.090 3.910 16 C -0.135 4.135 17 C -0.112 4.112 18 C -0.089 4.089 19 H 0.072 0.928 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.137 4.137 23 C 0.155 3.845 24 H 0.065 0.935 25 H 0.281 0.719 26 H 0.383 0.617 27 H 0.059 0.941 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.717 -7.526 -2.829 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.155 4.155 3 Si 0.699 3.301 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.146 0.854 9 N -0.161 5.161 10 C 0.188 3.812 11 O -0.456 6.456 12 C 0.288 3.712 13 O -0.427 6.427 14 N -0.307 5.307 15 C -0.031 4.031 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.108 4.108 19 H 0.090 0.910 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.175 4.175 23 C 0.051 3.949 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.479 -7.587 -2.753 17.457 hybrid contribution 0.655 1.268 0.133 1.434 sum 16.135 -6.319 -2.620 17.525 Atomic orbital electron populations 1.69438 1.06110 1.28645 1.44418 1.25223 0.95527 0.98563 0.96175 0.86702 0.80521 0.83130 0.79782 1.18920 1.19527 1.18374 1.19561 0.79122 0.97073 1.48080 0.85435 1.41841 1.07576 1.06909 1.59802 1.18862 0.86839 0.85111 0.90427 1.90439 1.68828 1.29381 1.56994 1.20660 0.89795 0.83581 0.77163 1.90648 1.70620 1.31721 1.49685 1.46878 1.05060 1.07524 1.71201 1.22424 0.95687 0.83107 1.01914 1.22006 0.95965 0.99427 0.99921 1.21360 0.96318 0.96387 1.00940 1.21097 0.98087 0.94055 0.97524 0.90958 1.22085 1.00158 0.98037 0.95111 1.22139 1.00705 0.95275 0.98022 1.22763 1.02318 0.98048 0.94369 1.20614 0.80020 0.95109 0.99141 0.91748 0.90780 0.78182 0.92274 0.84659 0.90621 0.91425 0.91747 0.91724 0.91903 0.91534 0.91976 0.91949 0.91237 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.45 13.94 55.53 0.77 -22.68 16 2 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 3 Si 0.87 19.28 27.74 -169.99 -4.72 14.57 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.58 6.53 56.52 0.37 -5.21 16 7 C -0.31 -8.50 10.16 -15.15 -0.15 -8.65 16 8 H 0.13 3.89 7.36 -52.49 -0.39 3.50 16 9 N -0.53 -13.13 5.05 -11.59 -0.06 -13.19 16 10 C 0.40 9.60 7.62 -11.87 -0.09 9.51 16 11 O -0.57 -14.28 12.41 5.36 0.07 -14.22 16 12 C 0.50 10.50 6.92 -11.88 -0.08 10.42 16 13 O -0.55 -11.97 14.08 5.41 0.08 -11.89 16 14 N -0.57 -9.96 3.02 -169.07 -0.51 -10.47 16 15 C 0.09 1.47 4.97 -4.67 -0.02 1.45 16 16 C -0.14 -1.67 6.08 -26.48 -0.16 -1.83 16 17 C -0.11 -1.21 5.18 -27.19 -0.14 -1.35 16 18 C -0.09 -1.00 2.78 -91.62 -0.25 -1.26 16 19 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 20 C -0.12 -1.19 6.00 -26.12 -0.16 -1.34 16 21 C -0.12 -1.46 6.81 -25.75 -0.18 -1.64 16 22 C -0.14 -1.96 5.80 -25.43 -0.15 -2.11 16 23 C 0.16 2.27 2.91 -68.85 -0.20 2.07 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 26 H 0.38 9.08 5.24 -40.82 -0.21 8.86 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.14 2.61 4.99 -53.86 -0.27 2.34 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.84 7.11 -51.93 -0.37 0.47 16 31 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 7.08 -51.93 -0.37 0.28 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.55 5.58 -51.93 -0.29 1.26 16 LS Contribution 294.72 15.07 4.44 4.44 Total: -1.00 -28.91 294.72 -6.89 -35.80 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.29 Total: 11.04 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.68 Total: 6.59 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.20 Total: -46.34 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.14 Total: -26.11 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.72 Total: 14.57 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.91 -6.89 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087771081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.519 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds