Wall clock time and date at job start Mon Mar 30 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86802 * 119.99711 * 2 1 4 4 H 1.48498 * 109.47103 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.47107 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47273 * 149.99627 * 3 2 1 7 7 C 1.39583 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00263 * 0.02562 * 7 2 1 9 9 N 1.36117 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00069 * 180.02562 * 9 7 2 11 11 O 1.21501 * 120.00005 * 359.97438 * 10 9 7 12 12 C 1.48833 * 120.00127 * 179.97438 * 10 9 7 13 13 O 1.21445 * 120.00063 * 6.32396 * 12 10 9 14 14 N 1.34772 * 120.00214 * 186.32020 * 12 10 9 15 15 C 1.45189 * 116.70561 * 358.31373 * 14 12 10 16 16 C 1.53151 * 110.03661 * 154.68824 * 15 14 12 17 17 C 1.53338 * 107.29214 * 53.80310 * 16 15 14 18 18 C 1.51749 * 109.48170 * 291.42726 * 17 16 15 19 19 H 1.09009 * 108.21177 * 169.78047 * 18 17 16 20 20 C 1.53330 * 111.03005 * 288.25435 * 18 17 16 21 21 C 1.53846 * 106.72696 * 124.24038 * 20 18 17 22 22 C 1.54042 * 105.81704 * 18.57903 * 21 20 18 23 23 C 1.44368 * 116.70850 * 178.06025 * 14 12 10 24 24 H 1.08997 * 108.73848 * 64.42477 * 23 14 12 25 25 H 0.97000 * 120.00263 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00570 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.37582 * 274.86500 * 15 14 12 28 28 H 1.09004 * 109.37728 * 34.50994 * 15 14 12 29 29 H 1.08995 * 109.89309 * 173.24949 * 16 15 14 30 30 H 1.08995 * 109.89279 * 294.28223 * 16 15 14 31 31 H 1.09000 * 109.47096 * 51.42691 * 17 16 15 32 32 H 1.09001 * 109.47125 * 171.42304 * 17 16 15 33 33 H 1.08999 * 110.00870 * 243.55733 * 20 18 17 34 34 H 1.08995 * 110.00846 * 4.88009 * 20 18 17 35 35 H 1.09002 * 110.18246 * 137.66849 * 21 20 18 36 36 H 1.09000 * 110.18292 * 259.41751 * 21 20 18 37 37 H 1.09003 * 110.34438 * 90.23205 * 22 21 20 38 38 H 1.09000 * 110.34586 * 212.48947 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4915 2.0465 -1.4001 5 1 1.4414 2.6527 0.7000 6 1 3.5416 1.4404 0.7001 7 6 2.0081 -1.2088 0.0005 8 1 1.4682 -2.1442 0.0005 9 7 3.3693 -1.2087 0.0000 10 6 4.0432 -2.3759 0.0000 11 8 3.4358 -3.4281 0.0010 12 6 5.5316 -2.3758 -0.0011 13 8 6.1388 -1.3304 0.1138 14 7 6.2054 -3.5359 -0.1296 15 6 5.4089 -4.7461 -0.2241 16 6 6.1919 -5.8329 -0.9666 17 6 7.5412 -5.9893 -0.2551 18 6 8.3781 -4.7432 -0.4776 19 1 9.2470 -4.7947 0.1786 20 6 8.8784 -4.6675 -1.9250 21 6 8.4066 -3.3151 -2.4865 22 6 8.0700 -2.4458 -1.2602 23 6 7.6461 -3.4489 -0.1651 24 1 7.9978 -3.0713 0.7950 25 1 -0.4850 0.8400 -0.0004 26 1 3.8543 -0.3686 -0.0004 27 1 5.1646 -5.0974 0.7784 28 1 4.4871 -4.5311 -0.7647 29 1 5.6433 -6.7741 -0.9324 30 1 6.3502 -5.5336 -2.0027 31 1 7.3746 -6.1291 0.8130 32 1 8.0658 -6.8559 -0.6575 33 1 9.9668 -4.7210 -1.9467 34 1 8.4534 -5.4834 -2.5096 35 1 9.2026 -2.8515 -3.0691 36 1 7.5201 -3.4536 -3.1054 37 1 8.9483 -1.8848 -0.9408 38 1 7.2489 -1.7669 -1.4907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087771081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:09 Heat of formation + Delta-G solvation = -78.690230 kcal Electronic energy + Delta-G solvation = -21275.293434 eV Core-core repulsion = 18117.063058 eV Total energy + Delta-G solvation = -3158.230377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33151 -40.25725 -38.81513 -36.86355 -35.66095 -34.27019 -33.83639 -30.34831 -29.22885 -27.79513 -25.95481 -24.39572 -23.22287 -21.98105 -21.22943 -20.25604 -19.24072 -18.25553 -17.97184 -17.19460 -16.99028 -16.30031 -16.25845 -15.85462 -15.42361 -15.04679 -14.88975 -14.72634 -14.46233 -14.42054 -13.94182 -13.20309 -13.11890 -13.00515 -12.57323 -12.54265 -12.37319 -12.20852 -12.06469 -11.82523 -11.69818 -11.52633 -11.47883 -11.40196 -11.12441 -10.47706 -9.90834 -9.51444 -8.62979 -6.15894 0.51949 1.27203 1.30673 1.36656 1.68955 2.08660 2.24546 2.87021 3.05502 3.48126 3.57614 3.74266 3.77628 4.03906 4.11718 4.27220 4.40666 4.53682 4.60462 4.65936 4.72069 4.73123 4.95452 4.99126 5.08899 5.10587 5.15675 5.21610 5.23140 5.27985 5.30947 5.46300 5.47042 5.73997 5.76360 6.04632 6.31245 6.59457 6.89097 7.15274 7.62346 8.51463 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.005613 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.476016 B = 4987.105255 C = 5553.599028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.251 1.251 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.533 5.533 10 C 0.404 3.596 11 O -0.584 6.584 12 C 0.502 3.498 13 O -0.557 6.557 14 N -0.557 5.557 15 C 0.087 3.913 16 C -0.126 4.126 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.095 0.905 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.139 4.139 23 C 0.143 3.857 24 H 0.059 0.941 25 H 0.290 0.710 26 H 0.391 0.609 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.169 -8.094 -3.271 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.192 4.192 3 Si 0.764 3.236 4 H -0.176 1.176 5 H -0.180 1.180 6 H -0.175 1.175 7 C -0.466 4.466 8 H 0.099 0.901 9 N -0.171 5.171 10 C 0.190 3.810 11 O -0.472 6.472 12 C 0.287 3.713 13 O -0.437 6.437 14 N -0.289 5.289 15 C -0.035 4.035 16 C -0.164 4.164 17 C -0.146 4.146 18 C -0.105 4.105 19 H 0.114 0.886 20 C -0.147 4.147 21 C -0.159 4.159 22 C -0.177 4.177 23 C 0.041 3.959 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.227 0.773 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.936 -8.195 -3.201 20.880 hybrid contribution -0.384 1.280 0.272 1.364 sum 18.552 -6.915 -2.929 20.014 Atomic orbital electron populations 1.69539 1.07782 1.30273 1.45342 1.26017 0.96318 1.02019 0.94869 0.85645 0.79352 0.78006 0.80567 1.17593 1.18039 1.17538 1.19171 0.80298 0.96080 1.51047 0.90140 1.41726 1.06663 1.07580 1.61168 1.19656 0.88574 0.84588 0.88213 1.90465 1.70139 1.30050 1.56514 1.20101 0.88223 0.84812 0.78208 1.90641 1.70180 1.32278 1.50577 1.46993 1.06490 1.06486 1.68901 1.22300 0.95393 0.84049 1.01732 1.21965 0.96763 0.98243 0.99442 1.21376 0.95117 0.97268 1.00820 1.21157 0.98266 0.92113 0.98996 0.88623 1.22083 1.01696 0.96937 0.93956 1.22123 1.00779 0.96133 0.96836 1.22731 1.01460 0.97928 0.95573 1.21008 0.77896 0.97804 0.99224 0.92262 0.89966 0.77336 0.92830 0.88010 0.88828 0.91240 0.91881 0.88558 0.89428 0.90538 0.90188 0.93453 0.90005 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.93 13.94 21.76 0.30 -50.63 16 2 C 0.01 0.70 5.51 85.14 0.47 1.17 16 3 Si 0.94 39.95 27.74 68.60 1.90 41.85 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -10.22 6.53 99.48 0.65 -9.57 16 7 C -0.34 -19.53 10.16 84.35 0.86 -18.68 16 8 H 0.08 5.31 7.36 -2.91 -0.02 5.29 16 9 N -0.53 -27.63 5.05 -308.87 -1.56 -29.20 16 10 C 0.40 20.06 7.62 87.08 0.66 20.73 16 11 O -0.58 -30.88 12.41 -3.72 -0.05 -30.93 16 12 C 0.50 21.31 6.92 87.08 0.60 21.91 16 13 O -0.56 -24.38 14.08 -3.54 -0.05 -24.43 16 14 N -0.56 -19.12 3.02 -807.15 -2.44 -21.56 16 15 C 0.09 2.82 4.97 86.68 0.43 3.25 16 16 C -0.13 -2.81 6.08 30.76 0.19 -2.62 16 17 C -0.11 -1.89 5.18 30.30 0.16 -1.73 16 18 C -0.09 -1.61 2.78 -11.44 -0.03 -1.64 16 19 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 20 C -0.11 -1.73 6.00 30.99 0.19 -1.54 16 21 C -0.12 -2.53 6.81 31.23 0.21 -2.31 16 22 C -0.14 -3.75 5.80 31.44 0.18 -3.57 16 23 C 0.14 3.93 2.91 45.53 0.13 4.06 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 26 H 0.39 18.75 5.24 -92.71 -0.49 18.27 16 27 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.10 4.07 4.99 -33.04 -0.16 3.90 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.55 7.11 -2.39 -0.02 1.53 16 31 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.11 7.08 -2.39 -0.02 1.09 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.85 5.58 -2.39 -0.01 1.84 16 Total: -1.00 -66.46 294.72 2.54 -63.92 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.38 Total: 31.96 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 4.05 Total: 19.01 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.70 Total: -101.38 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.10 Total: -55.36 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.90 Total: 41.85 kcal Total: -66.46 2.54 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087771081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.769 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds