Wall clock time and date at job start Mon Mar 30 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86806 * 120.00037 * 2 1 4 4 H 1.48496 * 109.46977 * 240.00300 * 3 2 1 5 5 H 1.48497 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47037 * 120.00210 * 3 2 1 7 7 C 1.39589 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36117 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99497 * 180.02562 * 9 7 2 11 11 O 1.21493 * 120.00034 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99606 * 180.02562 * 10 9 7 13 13 O 1.21437 * 120.00093 * 6.26262 * 12 10 9 14 14 N 1.34773 * 119.99675 * 186.27441 * 12 10 9 15 15 C 1.45340 * 116.78009 * 358.87784 * 14 12 10 16 16 C 1.53103 * 109.92156 * 154.64662 * 15 14 12 17 17 C 1.54503 * 107.07238 * 53.61490 * 16 15 14 18 18 C 1.52562 * 108.39955 * 289.77360 * 17 16 15 19 19 H 1.08996 * 109.88596 * 291.33305 * 18 17 16 20 20 C 1.53321 * 108.82645 * 171.71117 * 18 17 16 21 21 C 1.54038 * 104.72067 * 266.55845 * 20 18 17 22 22 C 1.53818 * 105.82932 * 331.20982 * 21 20 18 23 23 C 1.43765 * 116.77446 * 178.86564 * 14 12 10 24 24 H 1.08999 * 107.07362 * 308.96150 * 23 14 12 25 25 H 0.97003 * 119.99747 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00739 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.38513 * 274.75843 * 15 14 12 28 28 H 1.09001 * 109.38605 * 34.53184 * 15 14 12 29 29 H 1.08999 * 109.83170 * 172.32706 * 16 15 14 30 30 H 1.09006 * 109.82587 * 293.25239 * 16 15 14 31 31 H 1.08992 * 109.31521 * 170.43914 * 17 16 15 32 32 H 1.09005 * 110.52761 * 49.81589 * 17 16 15 33 33 H 1.08999 * 110.81708 * 147.60275 * 20 18 17 34 34 H 1.08995 * 110.23567 * 25.21988 * 20 18 17 35 35 H 1.09000 * 110.17661 * 212.12061 * 21 20 18 36 36 H 1.09001 * 110.17333 * 90.30695 * 21 20 18 37 37 H 1.08994 * 110.00316 * 259.62470 * 22 21 20 38 38 H 1.09001 * 110.03232 * 138.29571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0978 1.6964 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2089 -0.0001 9 7 1.3274 -2.3876 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2163 -3.5548 -0.0001 12 6 1.2572 -4.8438 -0.0011 13 8 0.0483 -4.8469 -0.1163 14 7 1.9250 -6.0075 0.1264 15 6 3.3719 -5.9237 0.2346 16 6 3.9115 -7.1500 0.9757 17 6 3.3662 -8.3976 0.2455 18 6 1.8661 -8.4915 0.5072 19 1 1.6870 -8.7331 1.5548 20 6 1.2782 -9.5987 -0.3754 21 6 0.7966 -8.8725 -1.6456 22 6 0.4342 -7.4453 -1.2010 23 6 1.1355 -7.2089 0.1423 24 1 0.3515 -7.0668 0.8861 25 1 -0.4850 0.8401 0.0004 26 1 0.3575 -2.3877 -0.0005 27 1 3.8077 -5.8837 -0.7638 28 1 3.6421 -5.0215 0.7834 29 1 5.0008 -7.1552 0.9378 30 1 3.5771 -7.1318 2.0131 31 1 3.8604 -9.2877 0.6345 32 1 3.5448 -8.3211 -0.8272 33 1 0.4404 -10.0870 0.1223 34 1 2.0472 -10.3295 -0.6257 35 1 -0.0809 -9.3730 -2.0550 36 1 1.5944 -8.8441 -2.3878 37 1 -0.6451 -7.3555 -1.0790 38 1 0.7872 -6.7237 -1.9379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087771087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:18 Heat of formation + Delta-G solvation = -70.906847 kcal Electronic energy + Delta-G solvation = -21030.432744 eV Core-core repulsion = 17872.539881 eV Total energy + Delta-G solvation = -3157.892864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66112 -38.55297 -36.95959 -35.33579 -34.04777 -32.77598 -31.40250 -28.98638 -28.14997 -25.88244 -24.68271 -22.77235 -21.90299 -20.60624 -19.38643 -18.49808 -17.81718 -16.41960 -16.34904 -15.72900 -15.19857 -15.12534 -14.74559 -14.05869 -13.87218 -13.59973 -13.31487 -13.13133 -12.91583 -12.56433 -12.34129 -11.85764 -11.65694 -11.49271 -11.21512 -11.12031 -10.99920 -10.71025 -10.62589 -10.52693 -10.41399 -10.32239 -10.17231 -9.95206 -9.66526 -8.29145 -8.14335 -7.81117 -6.67703 -4.00145 2.47015 3.15054 3.16966 3.17804 3.37603 4.04039 4.23620 4.48642 4.57513 4.74700 4.91980 5.13777 5.17573 5.19496 5.24238 5.47319 5.54142 5.58337 5.67082 5.70157 5.83578 5.87910 5.93825 6.00685 6.04065 6.06026 6.16287 6.26594 6.39336 6.41252 6.55278 6.68747 7.22876 7.30544 7.67201 7.80641 8.34032 8.64740 8.95443 9.31348 9.84199 10.46913 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.004839 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.851586 B = 5784.571782 C = 6315.354852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.113 0.887 9 N -0.497 5.497 10 C 0.392 3.608 11 O -0.588 6.588 12 C 0.502 3.498 13 O -0.544 6.544 14 N -0.577 5.577 15 C 0.094 3.906 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.089 4.089 19 H 0.075 0.925 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.127 4.127 23 C 0.154 3.846 24 H 0.064 0.936 25 H 0.281 0.719 26 H 0.404 0.596 27 H 0.056 0.944 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -14.867 0.340 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.130 0.870 9 N -0.130 5.130 10 C 0.177 3.823 11 O -0.477 6.477 12 C 0.288 3.712 13 O -0.421 6.421 14 N -0.311 5.311 15 C -0.028 4.028 16 C -0.175 4.175 17 C -0.150 4.150 18 C -0.108 4.108 19 H 0.093 0.907 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.166 4.166 23 C 0.049 3.951 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.256 -14.750 0.290 15.108 hybrid contribution -0.267 0.695 -0.079 0.749 sum 2.989 -14.055 0.211 14.370 Atomic orbital electron populations 1.69478 1.06542 1.29478 1.45132 1.25588 0.95609 1.00482 0.95843 0.85782 0.78879 0.79344 0.79505 1.19371 1.20607 1.19370 1.19836 0.93952 0.81880 1.48083 0.86962 1.41568 1.10478 1.04206 1.56735 1.18934 0.87835 0.84382 0.91129 1.90403 1.12985 1.85579 1.58774 1.20770 0.87408 0.85978 0.77024 1.90672 1.14386 1.87849 1.49235 1.46769 1.07739 1.04628 1.71922 1.22385 0.78052 1.00594 1.01757 1.22228 1.00632 0.95013 0.99599 1.21774 0.94279 0.98100 1.00888 1.21319 0.95789 0.93637 1.00034 0.90673 1.22121 1.00234 0.97143 0.95996 1.22113 1.00674 0.95719 0.97485 1.22379 1.00942 0.96240 0.97055 1.20165 0.92467 0.84703 0.97771 0.91769 0.90852 0.76013 0.92524 0.84778 0.90753 0.91514 0.92021 0.91494 0.91571 0.91335 0.91832 0.91991 0.90977 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.20 13.03 55.53 0.72 -22.48 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 3 Si 0.94 19.92 29.56 -169.99 -5.02 14.90 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.31 -8.35 9.67 -15.15 -0.15 -8.50 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.50 -13.22 5.24 -11.59 -0.06 -13.28 16 10 C 0.39 9.80 7.62 -11.87 -0.09 9.71 16 11 O -0.59 -15.02 12.43 5.37 0.07 -14.96 16 12 C 0.50 11.21 7.17 -11.87 -0.09 11.12 16 13 O -0.54 -12.92 15.32 5.42 0.08 -12.84 16 14 N -0.58 -10.62 2.89 -170.00 -0.49 -11.11 16 15 C 0.09 1.59 4.96 -4.61 -0.02 1.57 16 16 C -0.14 -1.75 6.18 -25.89 -0.16 -1.91 16 17 C -0.11 -1.28 5.04 -26.17 -0.13 -1.41 16 18 C -0.09 -1.06 2.85 -91.16 -0.26 -1.32 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.12 -1.18 6.32 -26.02 -0.16 -1.35 16 21 C -0.12 -1.39 6.80 -25.76 -0.18 -1.57 16 22 C -0.13 -1.91 5.49 -26.11 -0.14 -2.05 16 23 C 0.15 2.40 2.55 -69.67 -0.18 2.22 16 24 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 25 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 26 H 0.40 10.93 7.36 -40.82 -0.30 10.63 16 27 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.14 2.67 5.04 -53.56 -0.27 2.40 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.79 8.07 -51.93 -0.42 0.38 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.15 7.76 -51.93 -0.40 0.74 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -28.81 302.46 -7.31 -36.12 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.51 Total: 11.86 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.65 Total: 7.23 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.17 Total: -46.87 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: 0.15 Total: -27.80 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.81 -7.31 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087771087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.789 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds